PDB Chemical Component L0G
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for L0G
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C2 |
O1 |
1.223 |
1.215 |
| N3 |
C2 |
1.349 |
1.349 |
| C2 |
N7 |
1.346 |
1.348 |
| C4 |
N3 |
1.431 |
1.465 |
| H33 |
N3 |
1.000 |
0.970 |
| C6 |
C4 |
1.496 |
1.531 |
| C5 |
C4 |
1.497 |
1.530 |
| C4 |
H34 |
1.100 |
1.090 |
| H35 |
C5 |
1.100 |
1.090 |
| C6 |
C5 |
1.500 |
1.532 |
| C5 |
H36 |
1.100 |
1.089 |
| H38 |
C6 |
1.100 |
1.090 |
| H37 |
C6 |
1.100 |
1.089 |
| H39 |
N7 |
1.000 |
0.970 |
| N7 |
C8 |
1.344 |
1.405 |
| C8 |
C13 |
1.360 |
1.414 |
| C8 |
C9 |
1.326 |
1.356 |
| C9 |
H40 |
1.080 |
1.080 |
| C9 |
N10 |
1.353 |
1.359 |
| N12 |
N10 |
1.345 |
1.401 |
| N10 |
H11 |
1.000 |
0.970 |
| C13 |
N12 |
1.342 |
1.318 |
| C14 |
C13 |
1.434 |
1.478 |
| N31 |
C14 |
1.370 |
1.311 |
| C14 |
N15 |
1.326 |
1.369 |
| C17 |
N15 |
1.330 |
1.381 |
| N15 |
H16 |
1.000 |
0.970 |
| C30 |
C17 |
1.365 |
1.407 |
| C18 |
C17 |
1.365 |
1.387 |
| C19 |
C18 |
1.370 |
1.380 |
| C18 |
H41 |
1.080 |
1.080 |
| C28 |
C19 |
1.397 |
1.387 |
| C20 |
C19 |
1.499 |
1.507 |
| N21 |
C20 |
1.480 |
1.469 |
| C20 |
H43 |
1.100 |
1.090 |
| C20 |
H42 |
1.100 |
1.090 |
| H22 |
N21 |
1.000 |
1.010 |
| C27 |
N21 |
1.485 |
1.470 |
| C23 |
N21 |
1.462 |
1.469 |
| C24 |
C23 |
1.515 |
1.531 |
| C23 |
H44 |
1.100 |
1.090 |
| C23 |
H45 |
1.100 |
1.090 |
| H46 |
C24 |
1.100 |
1.090 |
| O25 |
C24 |
1.439 |
1.430 |
| H47 |
C24 |
1.101 |
1.089 |
| O25 |
C26 |
1.437 |
1.430 |
| H48 |
C26 |
1.100 |
1.090 |
| H49 |
C26 |
1.101 |
1.090 |
| C26 |
C27 |
1.508 |
1.531 |
| C27 |
H51 |
1.100 |
1.090 |
| C27 |
H50 |
1.100 |
1.090 |
| H52 |
C28 |
1.080 |
1.080 |
| C28 |
C29 |
1.398 |
1.376 |
| H53 |
C29 |
1.080 |
1.080 |
| C29 |
C30 |
1.395 |
1.398 |
| C30 |
N31 |
1.399 |
1.356 |
| H32 |
N31 |
1.000 |
0.970 |
Bond Angles for L0G
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N3 |
C2 |
N7 |
114.9 |
120.0 |
| C2 |
N7 |
C8 |
120.9 |
120.0 |
| C6 |
C4 |
H34 |
134.9 |
117.5 |
| C5 |
C4 |
H34 |
135.0 |
117.5 |
| H35 |
C5 |
H36 |
74.7 |
115.6 |
| C6 |
C5 |
H36 |
136.0 |
117.5 |
| N7 |
C8 |
C13 |
126.2 |
126.2 |
| N7 |
C8 |
C9 |
127.3 |
126.1 |
| C9 |
C8 |
C13 |
106.5 |
107.7 |
| C8 |
C13 |
N12 |
111.5 |
108.0 |
| C8 |
C9 |
H40 |
126.5 |
126.1 |
| C8 |
C9 |
N10 |
107.1 |
107.8 |
| N10 |
C9 |
H40 |
126.4 |
126.1 |
| C9 |
N10 |
H11 |
124.3 |
125.9 |
| N12 |
N10 |
H11 |
124.3 |
125.9 |
| C14 |
N15 |
H16 |
125.4 |
126.3 |
| C17 |
N15 |
H16 |
125.4 |
126.4 |
| C19 |
C18 |
H41 |
119.6 |
120.1 |
| N21 |
C20 |
H43 |
108.8 |
109.4 |
| N21 |
C20 |
H42 |
108.3 |
109.5 |
| H42 |
C20 |
H43 |
111.1 |
109.5 |
| C24 |
C23 |
H44 |
109.0 |
109.5 |
| C24 |
C23 |
H45 |
108.8 |
109.5 |
| H44 |
C23 |
H45 |
110.4 |
109.5 |
| O25 |
C26 |
C27 |
110.8 |
109.3 |
| C26 |
C27 |
H51 |
109.9 |
109.5 |
| C26 |
C27 |
H50 |
110.2 |
109.5 |
| H50 |
C27 |
H51 |
108.4 |
109.5 |
| C28 |
C29 |
C30 |
119.8 |
119.8 |
| C29 |
C30 |
N31 |
134.5 |
133.4 |
Torsion Angles for L0G
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N3 |
C2 |
N7 |
C8 |
175.7 |
179.8 |
| C2 |
N7 |
C8 |
C13 |
191.4 |
180.0 |
| C2 |
N7 |
C8 |
C9 |
10.8 |
0.3 |
| C4 |
N3 |
C2 |
N7 |
343.7 |
180.3 |
| C5 |
C4 |
C6 |
H34 |
234.7 |
252.5 |
| C6 |
C4 |
C5 |
H34 |
125.3 |
107.5 |
| C6 |
C5 |
H35 |
H36 |
221.4 |
214.3 |
| C5 |
C6 |
C4 |
H34 |
125.3 |
107.5 |
| C6 |
C5 |
C4 |
H34 |
234.7 |
252.5 |
| H35 |
C5 |
C6 |
H36 |
113.3 |
145.0 |
| H36 |
C5 |
C4 |
H34 |
108.1 |
145.1 |
| C9 |
C8 |
N7 |
C13 |
179.4 |
180.3 |
| N7 |
C8 |
C13 |
N12 |
180.1 |
179.8 |
| N7 |
C8 |
C9 |
H40 |
0.2 |
359.9 |
| N7 |
C8 |
C9 |
N10 |
180.2 |
180.0 |
| N7 |
C8 |
C13 |
C9 |
179.5 |
180.3 |
| C13 |
C8 |
C9 |
H40 |
179.7 |
180.2 |
| C13 |
C8 |
C9 |
N10 |
359.7 |
0.3 |
| N7 |
C8 |
C9 |
C13 |
180.5 |
179.7 |
| C9 |
C8 |
C13 |
N12 |
0.6 |
359.6 |
| N10 |
C9 |
C8 |
H40 |
180.0 |
180.1 |
| C8 |
C9 |
N10 |
H11 |
179.9 |
179.9 |
| H40 |
C9 |
C8 |
C13 |
179.7 |
180.2 |
| C8 |
C9 |
H40 |
N10 |
180.0 |
180.1 |
| H40 |
C9 |
N10 |
H11 |
359.9 |
360.0 |
| N10 |
C9 |
C8 |
C13 |
359.7 |
0.3 |
| C8 |
C9 |
N10 |
H40 |
180.0 |
179.9 |
| N12 |
N10 |
C9 |
H11 |
180.0 |
180.0 |
| C8 |
C13 |
N12 |
N10 |
359.4 |
0.4 |
| N12 |
N10 |
C9 |
H40 |
179.9 |
180.0 |
| C9 |
N10 |
N12 |
H11 |
180.0 |
180.0 |
| H11 |
N10 |
C9 |
H40 |
359.9 |
360.0 |
| C13 |
N12 |
N10 |
H11 |
180.5 |
179.8 |
| N31 |
C14 |
N15 |
H16 |
180.1 |
180.2 |
| C17 |
N15 |
C14 |
H16 |
180.0 |
180.0 |
| C14 |
N15 |
C17 |
H16 |
180.0 |
180.0 |
| C30 |
C17 |
N15 |
H16 |
179.9 |
180.0 |
| C18 |
C17 |
N15 |
H16 |
359.9 |
0.0 |
| C28 |
C19 |
C18 |
H41 |
179.9 |
180.0 |
| C20 |
C19 |
C18 |
H41 |
0.7 |
359.9 |
| H42 |
C20 |
N21 |
H43 |
239.1 |
120.1 |
| N21 |
C20 |
H43 |
H42 |
240.8 |
120.0 |
| N21 |
C20 |
H42 |
H43 |
119.5 |
240.0 |
| H22 |
N21 |
C20 |
H43 |
194.7 |
174.9 |
| H22 |
N21 |
C20 |
H42 |
73.8 |
295.0 |
| C27 |
N21 |
C20 |
H43 |
77.4 |
54.9 |
| C27 |
N21 |
C20 |
H42 |
316.5 |
175.0 |
| C23 |
N21 |
C20 |
H43 |
314.3 |
295.0 |
| C23 |
N21 |
C20 |
H42 |
193.4 |
55.0 |
| H44 |
C23 |
C24 |
H45 |
120.5 |
120.1 |
| C24 |
C23 |
H44 |
H45 |
240.5 |
239.9 |
| C24 |
C23 |
H45 |
H44 |
119.6 |
120.0 |
| O25 |
C24 |
C23 |
H44 |
185.3 |
182.4 |
| O25 |
C24 |
C23 |
H45 |
64.8 |
62.4 |
| O25 |
C26 |
C27 |
H51 |
299.9 |
177.6 |
| O25 |
C26 |
C27 |
H50 |
180.5 |
297.7 |
| H48 |
C26 |
C27 |
H51 |
179.9 |
57.7 |
| H48 |
C26 |
C27 |
H50 |
60.5 |
177.8 |
| H49 |
C26 |
C27 |
H51 |
59.3 |
297.5 |
| H49 |
C26 |
C27 |
H50 |
299.9 |
57.6 |
| H50 |
C27 |
C26 |
H51 |
240.5 |
120.1 |
| C26 |
C27 |
H51 |
H50 |
239.5 |
120.1 |
| C26 |
C27 |
H50 |
H51 |
120.3 |
240.0 |
| C28 |
C29 |
C30 |
N31 |
179.9 |
180.4 |