Atom Nomenclature for L0E

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for L0E

Atom Name (V3) Atom Name (V2)
O1 O1
C2 C2
N3 N3
C4 C4
C5 C5
N6 N6
N8 N8
C9 C9
C10 C10
N11 N11
C12 C12
C13 C13
C14 C14
C15 C15
N16 N16
C18 C18
C19 C19
O20 O20
C21 C21
C22 C22
C23 C23
C24 C24
C25 C25
N26 N26
N28 N28
C29 C29
C30 C30
C31 C31
C32 C32
C33 C33
C34 C34
H7 H7
H17 H17
H27 H27
H35 H35
H36 H36
H37 H37
H38 H38
H39 H39
H40 H40
H41 H41
H42 H42
H43 H43
H44 H44
H45 H45
H46 H46
H47 H47
H48 H48
H49 H49
H50 H50
H51 H51
H52 H52
H53 H53
H54 H54
H55 H55