PDB Chemical Component L0D
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for L0D
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C1 |
C2 |
1.341 |
1.350 |
| C1 |
N5 |
1.341 |
1.351 |
| C1 |
H1 |
1.080 |
1.080 |
| C2 |
C3 |
1.364 |
1.410 |
| C2 |
H2 |
1.080 |
1.081 |
| C3 |
N4 |
1.337 |
1.318 |
| C3 |
C7 |
1.447 |
1.479 |
| N4 |
N5 |
1.350 |
1.401 |
| N5 |
HN5 |
1.000 |
0.970 |
| C7 |
N8 |
1.318 |
1.311 |
| C7 |
N15 |
1.351 |
1.368 |
| N8 |
C9 |
1.363 |
1.355 |
| C9 |
C10 |
1.386 |
1.398 |
| C9 |
C14 |
1.390 |
1.406 |
| C10 |
C11 |
1.377 |
1.376 |
| C10 |
H10 |
1.080 |
1.079 |
| C11 |
C12 |
1.380 |
1.388 |
| C11 |
H11 |
1.080 |
1.080 |
| C12 |
C13 |
1.373 |
1.378 |
| C12 |
H12 |
1.080 |
1.080 |
| C13 |
C14 |
1.387 |
1.388 |
| C13 |
H13 |
1.080 |
1.079 |
| C14 |
N15 |
1.360 |
1.382 |
| N15 |
HN15 |
0.999 |
0.971 |
Bond Angles for L0D
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
C1 |
N5 |
106.8 |
108.0 |
| C2 |
C1 |
H1 |
126.6 |
126.0 |
| C1 |
C2 |
C3 |
107.0 |
107.9 |
| C1 |
C2 |
H2 |
126.5 |
126.1 |
| N5 |
C1 |
H1 |
126.6 |
126.0 |
| C1 |
N5 |
N4 |
111.3 |
108.1 |
| C1 |
N5 |
HN5 |
124.4 |
125.9 |
| C3 |
C2 |
H2 |
126.5 |
126.1 |
| C2 |
C3 |
N4 |
110.4 |
107.9 |
| C2 |
C3 |
C7 |
128.8 |
126.1 |
| N4 |
C3 |
C7 |
120.8 |
126.0 |
| C3 |
N4 |
N5 |
104.6 |
108.1 |
| C3 |
C7 |
N8 |
126.0 |
125.1 |
| C3 |
C7 |
N15 |
124.9 |
125.1 |
| N4 |
N5 |
HN5 |
124.4 |
125.9 |
| N8 |
C7 |
N15 |
109.1 |
109.8 |
| C7 |
N8 |
C9 |
107.9 |
109.7 |
| C7 |
N15 |
C14 |
109.5 |
107.2 |
| C7 |
N15 |
HN15 |
125.3 |
126.4 |
| N8 |
C9 |
C10 |
131.8 |
133.4 |
| N8 |
C9 |
C14 |
108.7 |
107.2 |
| C10 |
C9 |
C14 |
119.5 |
119.4 |
| C9 |
C10 |
C11 |
120.1 |
119.8 |
| C9 |
C10 |
H10 |
119.9 |
120.2 |
| C9 |
C14 |
C13 |
119.9 |
120.0 |
| C9 |
C14 |
N15 |
104.9 |
106.2 |
| C11 |
C10 |
H10 |
119.9 |
120.1 |
| C10 |
C11 |
C12 |
120.3 |
120.5 |
| C10 |
C11 |
H11 |
119.9 |
119.7 |
| C12 |
C11 |
H11 |
119.9 |
119.7 |
| C11 |
C12 |
C13 |
120.2 |
120.5 |
| C11 |
C12 |
H12 |
119.9 |
119.7 |
| C13 |
C12 |
H12 |
119.9 |
119.8 |
| C12 |
C13 |
C14 |
120.0 |
119.8 |
| C12 |
C13 |
H13 |
120.0 |
120.1 |
| C14 |
C13 |
H13 |
120.0 |
120.1 |
| C13 |
C14 |
N15 |
135.2 |
133.9 |
| C14 |
N15 |
HN15 |
125.3 |
126.4 |
Torsion Angles for L0D
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N5 |
C1 |
C2 |
H1 |
180.0 |
180.2 |
| C2 |
C1 |
N5 |
N4 |
0.0 |
0.0 |
| C2 |
C1 |
N5 |
HN5 |
180.0 |
180.0 |
| C3 |
C2 |
C1 |
H2 |
180.0 |
179.9 |
| C1 |
C2 |
C3 |
N4 |
359.7 |
0.0 |
| C1 |
C2 |
C3 |
C7 |
180.6 |
180.0 |
| C2 |
C1 |
N5 |
H1 |
180.0 |
179.8 |
| N5 |
C1 |
C2 |
C3 |
0.2 |
360.0 |
| N5 |
C1 |
C2 |
H2 |
180.2 |
180.0 |
| C3 |
N4 |
N5 |
C1 |
359.8 |
0.0 |
| N4 |
N5 |
C1 |
HN5 |
180.0 |
180.0 |
| C2 |
C1 |
H1 |
N5 |
180.0 |
180.3 |
| H1 |
C1 |
C2 |
C3 |
180.1 |
179.7 |
| H1 |
C1 |
C2 |
H2 |
0.1 |
359.8 |
| H1 |
C1 |
N5 |
N4 |
180.0 |
180.2 |
| H1 |
C1 |
N5 |
HN5 |
0.0 |
0.2 |
| C3 |
C2 |
C1 |
N5 |
0.2 |
360.0 |
| C3 |
C2 |
C1 |
H1 |
180.1 |
179.7 |
| C1 |
C2 |
C3 |
H2 |
180.0 |
180.1 |
| N4 |
C3 |
C2 |
C7 |
179.2 |
180.1 |
| C2 |
C3 |
N4 |
N5 |
0.3 |
360.0 |
| C2 |
C3 |
C7 |
N8 |
357.3 |
0.1 |
| C2 |
C3 |
C7 |
N15 |
176.5 |
179.7 |
| H2 |
C2 |
C1 |
N5 |
180.2 |
180.0 |
| H2 |
C2 |
C1 |
H1 |
0.1 |
359.8 |
| C1 |
C2 |
H2 |
C3 |
180.0 |
179.9 |
| H2 |
C2 |
C3 |
N4 |
179.7 |
180.0 |
| H2 |
C2 |
C3 |
C7 |
0.5 |
359.9 |
| C1 |
N5 |
N4 |
C3 |
359.8 |
0.0 |
| N4 |
C3 |
C2 |
H2 |
179.7 |
180.0 |
| C2 |
C3 |
N4 |
C7 |
180.7 |
179.9 |
| N4 |
C3 |
C7 |
N8 |
178.2 |
180.0 |
| N4 |
C3 |
C7 |
N15 |
357.4 |
359.6 |
| C3 |
N4 |
N5 |
HN5 |
179.9 |
180.0 |
| C7 |
C3 |
C2 |
H2 |
0.5 |
359.9 |
| C2 |
C3 |
C7 |
N4 |
179.1 |
180.1 |
| C7 |
C3 |
N4 |
N5 |
179.5 |
180.1 |
| N8 |
C7 |
C3 |
N15 |
180.8 |
180.4 |
| C3 |
C7 |
N8 |
C9 |
179.5 |
179.9 |
| C3 |
C7 |
N15 |
C14 |
180.6 |
179.9 |
| C3 |
C7 |
N15 |
HN15 |
0.5 |
360.0 |
| N4 |
N5 |
C1 |
H1 |
180.0 |
180.2 |
| C1 |
N5 |
N4 |
HN5 |
180.0 |
180.0 |
| N5 |
N4 |
C3 |
C7 |
179.5 |
180.1 |
| HN5 |
N5 |
C1 |
H1 |
0.0 |
0.2 |
| C1 |
N5 |
HN5 |
N4 |
180.0 |
180.1 |
| C3 |
C7 |
N8 |
N15 |
179.3 |
179.7 |
| N8 |
C7 |
N15 |
C14 |
359.8 |
359.6 |
| N8 |
C7 |
N15 |
HN15 |
179.8 |
179.7 |
| C7 |
N8 |
C9 |
C10 |
179.8 |
180.0 |
| C7 |
N8 |
C9 |
C14 |
359.8 |
360.0 |
| C3 |
C7 |
N15 |
N8 |
180.7 |
180.3 |
| N15 |
C7 |
N8 |
C9 |
0.2 |
0.3 |
| C9 |
C14 |
N15 |
C7 |
360.0 |
0.4 |
| C13 |
C14 |
N15 |
C7 |
180.2 |
180.1 |
| C14 |
N15 |
C7 |
HN15 |
180.0 |
179.9 |
| C9 |
N8 |
C7 |
N15 |
0.2 |
0.3 |
| C10 |
C9 |
N8 |
C14 |
180.0 |
180.0 |
| N8 |
C9 |
C10 |
C11 |
180.1 |
180.0 |
| N8 |
C9 |
C10 |
H10 |
0.1 |
0.1 |
| N8 |
C9 |
C14 |
C13 |
180.0 |
180.0 |
| N8 |
C9 |
C14 |
N15 |
0.1 |
359.8 |
| N8 |
C9 |
C10 |
C14 |
180.0 |
180.0 |
| C10 |
C9 |
C14 |
C13 |
360.0 |
0.0 |
| C10 |
C9 |
C14 |
N15 |
180.1 |
179.8 |
| C11 |
C10 |
C9 |
H10 |
180.0 |
179.9 |
| C9 |
C10 |
C11 |
C12 |
359.9 |
0.0 |
| C9 |
C10 |
C11 |
H11 |
179.9 |
180.1 |
| C7 |
N15 |
C14 |
C9 |
360.0 |
0.4 |
| N8 |
C9 |
C14 |
C10 |
180.0 |
180.0 |
| C14 |
C9 |
C10 |
C11 |
0.1 |
360.0 |
| C14 |
C9 |
C10 |
H10 |
180.1 |
180.0 |
| C12 |
C13 |
C14 |
C9 |
360.0 |
360.0 |
| C9 |
C14 |
C13 |
H13 |
180.0 |
180.1 |
| C13 |
C14 |
C9 |
N15 |
179.9 |
180.3 |
| C9 |
C14 |
N15 |
HN15 |
180.0 |
180.3 |
| C11 |
C10 |
C9 |
C14 |
0.1 |
360.0 |
| C9 |
C10 |
C11 |
H10 |
180.0 |
180.1 |
| C12 |
C11 |
C10 |
H11 |
180.0 |
180.0 |
| C10 |
C11 |
C12 |
C13 |
0.1 |
360.0 |
| C10 |
C11 |
C12 |
H12 |
180.1 |
180.0 |
| H10 |
C10 |
C9 |
C14 |
180.1 |
180.0 |
| C9 |
C10 |
H10 |
C11 |
180.0 |
179.9 |
| H10 |
C10 |
C11 |
C12 |
179.9 |
180.0 |
| H10 |
C10 |
C11 |
H11 |
359.9 |
360.0 |
| C12 |
C11 |
C10 |
H10 |
179.9 |
180.0 |
| C10 |
C11 |
C12 |
H11 |
180.0 |
180.0 |
| C13 |
C12 |
C11 |
H12 |
180.0 |
180.0 |
| C11 |
C12 |
C13 |
C14 |
360.0 |
0.0 |
| C11 |
C12 |
C13 |
H13 |
180.0 |
179.9 |
| H11 |
C11 |
C10 |
H10 |
359.9 |
360.0 |
| C10 |
C11 |
H11 |
C12 |
180.0 |
180.0 |
| H11 |
C11 |
C12 |
C13 |
180.1 |
179.9 |
| H11 |
C11 |
C12 |
H12 |
0.1 |
360.0 |
| C9 |
C14 |
C13 |
C12 |
360.0 |
360.0 |
| C13 |
C12 |
C11 |
H11 |
180.1 |
179.9 |
| C11 |
C12 |
C13 |
H12 |
180.0 |
180.0 |
| C14 |
C13 |
C12 |
H13 |
180.0 |
180.1 |
| C12 |
C13 |
C14 |
N15 |
179.8 |
180.3 |
| H12 |
C12 |
C11 |
H11 |
0.1 |
360.0 |
| C11 |
C12 |
H12 |
C13 |
180.0 |
180.0 |
| H12 |
C12 |
C13 |
C14 |
180.0 |
180.0 |
| H12 |
C12 |
C13 |
H13 |
0.0 |
359.9 |
| C7 |
N15 |
C14 |
C13 |
180.2 |
180.1 |
| C9 |
C14 |
C13 |
N15 |
180.2 |
179.7 |
| C14 |
C13 |
C12 |
H12 |
180.0 |
180.0 |
| C12 |
C13 |
C14 |
H13 |
180.0 |
179.9 |
| C13 |
C14 |
N15 |
HN15 |
0.2 |
0.0 |
| H13 |
C13 |
C12 |
H12 |
0.0 |
359.9 |
| C12 |
C13 |
H13 |
C14 |
180.0 |
180.1 |
| H13 |
C13 |
C14 |
N15 |
359.8 |
0.4 |
| C7 |
N15 |
C14 |
HN15 |
180.0 |
180.1 |
| C9 |
C14 |
N15 |
C13 |
179.8 |
180.3 |
| N15 |
C14 |
C13 |
H13 |
359.8 |
0.4 |
| C7 |
N15 |
HN15 |
C14 |
180.0 |
179.9 |