PDB Chemical Component L05

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for L05

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C1 O2 1.436 1.430
C1 H11 1.115 1.090
C1 H12 1.116 1.090
C1 H13 1.114 1.090
O2 C3 1.393 1.360
C3 C4 1.428 1.387
C3 C29 1.425 1.388
C4 C5 1.412 1.381
C4 H4 1.102 1.079
C5 C6 1.438 1.389
C5 H5 1.102 1.080
C6 N7 1.423 1.397
C6 C28 1.420 1.390
N7 C8 1.402 1.377
N7 HN7 1.021 0.970
C8 C9 1.361 1.371
C8 C20 1.510 1.483
C9 C10 1.483 1.474
C9 C22 1.471 1.479
C10 O11 1.214 1.216
C10 N12 1.360 1.344
N12 C13 1.469 1.465
N12 C20 1.363 1.344
C13 C14 1.521 1.507
C13 H131 1.115 1.090
C13 H132 1.115 1.090
C14 C15 1.437 1.382
C14 C19 1.436 1.382
C15 C16 1.423 1.382
C15 H15 1.102 1.080
C16 C17 1.418 1.382
C16 H16 1.103 1.080
C17 C18 1.428 1.382
C17 H17 1.104 1.080
C18 C19 1.425 1.382
C18 H18 1.104 1.080
C19 H19 1.103 1.080
C20 O21 1.220 1.215
C22 C23 1.433 1.395
C22 C27 1.432 1.396
C23 C24 1.414 1.379
C23 H23 1.104 1.080
C24 C25 1.423 1.384
C24 H24 1.104 1.080
C25 C26 1.411 1.384
C25 H25 1.103 1.080
C26 C27 1.418 1.380
C26 H26 1.102 1.080
C27 H27 1.102 1.080
C28 C29 1.422 1.381
C28 H28 1.104 1.080
C29 H29 1.103 1.079

Bond Angles for L05

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
O2 C1 H11 116.5 109.4
O2 C1 H12 109.6 109.4
O2 C1 H13 109.7 109.5
C1 O2 C3 116.5 106.8
H11 C1 H12 109.6 109.5
H11 C1 H13 109.7 109.5
H12 C1 H13 100.5 109.5
O2 C3 C4 115.1 120.0
O2 C3 C29 125.2 119.9
C4 C3 C29 119.7 120.1
C3 C4 C5 120.1 120.0
C3 C4 H4 120.4 120.0
C3 C29 C28 119.7 120.0
C3 C29 H29 120.3 120.0
C5 C4 H4 119.4 120.0
C4 C5 C6 120.9 119.9
C4 C5 H5 118.7 120.0
C6 C5 H5 120.4 120.1
C5 C6 N7 123.8 120.0
C5 C6 C28 118.3 120.0
N7 C6 C28 117.9 120.0
C6 N7 C8 132.4 120.0
C6 N7 HN7 104.3 120.0
C6 C28 C29 121.3 119.9
C6 C28 H28 119.3 120.1
C8 N7 HN7 104.3 120.0
N7 C8 C9 130.5 126.8
N7 C8 C20 123.3 126.9
C9 C8 C20 106.2 106.2
C8 C9 C10 108.2 106.5
C8 C9 C22 127.3 126.8
C8 C20 N12 107.2 108.5
C8 C20 O21 126.5 125.8
C10 C9 C22 124.6 126.7
C9 C10 O11 124.9 125.7
C9 C10 N12 107.4 108.7
C9 C22 C23 120.9 120.2
C9 C22 C27 120.2 120.1
O11 C10 N12 127.7 125.6
C10 N12 C13 124.1 124.9
C10 N12 C20 111.1 110.1
C13 N12 C20 124.8 124.9
N12 C13 C14 115.3 109.5
N12 C13 H131 110.1 109.5
N12 C13 H132 110.1 109.4
N12 C20 O21 126.3 125.8
C14 C13 H131 110.1 109.5
C14 C13 H132 110.1 109.5
C13 C14 C15 120.1 120.0
C13 C14 C19 121.6 120.0
H131 C13 H132 100.2 109.5
C15 C14 C19 118.2 120.0
C14 C15 C16 121.2 120.0
C14 C15 H15 119.9 120.0
C14 C19 C18 120.6 120.0
C14 C19 H19 120.1 120.0
C16 C15 H15 118.9 120.0
C15 C16 C17 119.8 120.0
C15 C16 H16 120.3 120.0
C17 C16 H16 119.9 120.0
C16 C17 C18 120.1 120.0
C16 C17 H17 119.7 120.0
C18 C17 H17 120.3 120.1
C17 C18 C19 120.1 120.0
C17 C18 H18 120.1 120.0
C19 C18 H18 119.8 120.0
C18 C19 H19 119.3 120.0
C23 C22 C27 118.9 119.7
C22 C23 C24 120.2 119.9
C22 C23 H23 120.6 120.1
C22 C27 C26 120.5 119.8
C22 C27 H27 120.2 120.1
C24 C23 H23 119.2 120.0
C23 C24 C25 120.2 120.1
C23 C24 H24 119.6 120.0
C25 C24 H24 120.3 119.9
C24 C25 C26 120.3 120.3
C24 C25 H25 120.2 119.9
C26 C25 H25 119.5 119.8
C25 C26 C27 119.9 120.1
C25 C26 H26 119.8 120.0
C27 C26 H26 120.3 119.9
C26 C27 H27 119.3 120.0
C29 C28 H28 119.4 120.0
C28 C29 H29 120.0 120.0

Torsion Angles for L05

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
H11 C1 O2 H12 234.8 240.0
H11 C1 O2 H13 125.4 120.0
H12 C1 O2 H13 250.5 240.0
C1 O2 C3 C4 278.2 180.0
C1 O2 C3 C29 98.2 359.8
O2 C1 H11 H12 125.2 119.9
O2 C1 H11 H13 234.7 240.0
H11 C1 O2 C3 180.1 180.0
H12 C1 H11 H13 109.5 120.1
O2 C1 H12 H11 231.0 240.1
O2 C1 H12 H13 115.4 120.0
H12 C1 O2 C3 305.2 300.0
H11 C1 H12 H13 244.5 239.9
O2 C1 H13 H11 129.2 120.0
O2 C1 H13 H12 244.6 240.0
H13 C1 O2 C3 54.7 60.0
H11 C1 H13 H12 115.4 120.0
C3 O2 C1 H11 180.1 180.0
C3 O2 C1 H12 305.2 300.0
C3 O2 C1 H13 54.7 60.0
C4 C3 O2 C29 180.0 180.2
O2 C3 C4 C5 180.1 180.0
O2 C3 C4 H4 0.1 0.0
O2 C3 C29 C28 180.0 179.7
O2 C3 C29 H29 0.0 0.2
O2 C3 C4 C29 180.0 179.8
C4 C3 C29 C28 0.1 359.5
C4 C3 C29 H29 180.1 180.0
C5 C4 C3 H4 180.0 180.0
C3 C4 C5 C6 360.0 360.0
C3 C4 C5 H5 179.9 179.9
O2 C3 C29 C4 180.0 180.2
C29 C3 C4 C5 0.0 0.3
C29 C3 C4 H4 180.0 180.3
C6 C28 C29 C3 359.9 0.5
C3 C29 C28 H28 179.9 180.3
C28 C29 C3 H29 180.0 179.5
C5 C4 C3 C29 0.0 0.3
C3 C4 C5 H4 180.0 180.0
C6 C5 C4 H5 180.0 180.0
C4 C5 C6 N7 180.1 180.0
C4 C5 C6 C28 0.0 0.0
H4 C4 C3 C29 180.0 180.3
C3 C4 H4 C5 180.0 180.0
H4 C4 C5 C6 180.0 180.0
H4 C4 C5 H5 359.9 359.9
C6 C5 C4 H4 180.0 180.0
C4 C5 C6 H5 180.0 180.0
N7 C6 C5 C28 180.1 179.9
C5 C6 N7 C8 29.5 172.9
C5 C6 N7 HN7 264.2 353.0
C5 C6 C28 C29 0.1 359.7
C5 C6 C28 H28 180.0 180.0
H5 C5 C4 H4 359.9 359.9
C4 C5 H5 C6 180.0 180.0
H5 C5 C6 N7 0.2 0.0
H5 C5 C6 C28 180.0 180.1
N7 C6 C5 H5 0.2 0.0
C5 C6 N7 C28 179.9 180.1
N7 C6 C28 C29 179.9 179.8
N7 C6 C28 H28 359.9 0.0
C8 N7 C6 HN7 125.3 179.9
C6 N7 C8 C9 43.1 122.1
C6 N7 C8 C20 223.1 301.8
C3 C29 C28 C6 359.9 0.5
C28 C6 C5 H5 180.0 180.1
C5 C6 C28 N7 180.1 179.9
C28 C6 N7 C8 209.6 352.8
C28 C6 N7 HN7 84.4 172.9
C29 C28 C6 H28 180.0 179.7
C6 C28 C29 H29 179.9 180.1
C8 N7 C6 C28 209.6 352.8
C6 N7 C8 HN7 234.7 180.1
C9 C8 N7 C20 180.0 180.3
N7 C8 C9 C10 179.9 180.0
N7 C8 C9 C22 359.7 359.9
N7 C8 C20 N12 180.2 179.9
N7 C8 C20 O21 0.1 0.2
HN7 N7 C6 C28 84.4 172.9
C6 N7 HN7 C8 141.5 179.9
HN7 N7 C8 C9 168.4 302.0
HN7 N7 C8 C20 348.4 121.7
C9 C8 N7 HN7 168.4 302.0
N7 C8 C9 C20 180.0 179.7
C9 C8 C20 N12 0.1 359.6
C9 C8 C20 O21 180.0 180.0
C10 C9 C8 C22 180.2 180.0
C8 C9 C10 O11 180.1 180.0
C8 C9 C10 N12 360.0 360.0
C8 C9 C22 C23 52.0 115.0
C8 C9 C22 C27 232.4 294.8
C20 C8 N7 HN7 348.4 121.7
N7 C8 C20 C9 180.0 180.3
C20 C8 C9 C10 359.9 0.3
C20 C8 C9 C22 179.8 180.2
C10 N12 C20 C8 359.8 0.4
C13 N12 C20 C8 180.1 180.1
N12 C20 C8 O21 180.1 179.6
C10 C9 C8 C20 359.9 0.3
C8 C9 C10 C22 179.8 180.0
C10 C9 C22 C23 231.8 294.9
C10 C9 C22 C27 52.1 114.7
O11 C10 C9 N12 180.1 180.1
C9 C10 N12 C13 179.8 180.0
C9 C10 N12 C20 0.1 359.8
C22 C9 C8 C20 179.8 180.2
C8 C9 C22 C10 180.2 180.0
C22 C9 C10 O11 0.3 0.1
C22 C9 C10 N12 180.1 180.0
C23 C22 C9 C27 179.7 180.2
C9 C22 C23 C24 180.2 180.0
C9 C22 C23 H23 0.3 360.0
C9 C22 C27 C26 179.9 179.8
C9 C22 C27 H27 359.9 0.2
O11 C10 C9 C22 0.3 0.1
C9 C10 O11 N12 179.8 179.9
O11 C10 N12 C13 359.7 360.0
O11 C10 N12 C20 180.0 179.7
C8 C20 N12 C10 359.8 0.4
N12 C10 C9 C22 180.1 180.0
C9 C10 N12 O11 180.1 180.1
C13 N12 C10 C20 179.7 180.3
C10 N12 C13 C14 88.7 90.0
C10 N12 C13 H131 213.9 210.0
C10 N12 C13 H132 323.5 330.0
C10 N12 C20 O21 179.9 180.0
C8 C20 N12 C13 180.1 180.1
C10 N12 C13 C20 180.4 179.7
C13 N12 C20 O21 0.2 359.7
C14 C13 N12 H131 234.7 240.0
C14 C13 N12 H132 125.2 120.0
N12 C13 C14 C15 229.2 90.0
N12 C13 C14 C19 49.6 269.8
H131 C13 N12 H132 250.5 240.0
C8 C20 N12 O21 179.9 180.4
C10 N12 C20 C13 179.7 180.3
C20 N12 C13 C14 268.3 270.3
C20 N12 C13 H131 33.6 30.4
C20 N12 C13 H132 143.1 150.4
C14 C13 N12 C20 268.3 270.3
N12 C13 C14 H131 125.3 120.0
N12 C13 C14 H132 234.8 240.0
H131 C13 C14 H132 109.5 120.0
C15 C14 C13 C19 179.7 180.2
C13 C14 C15 C16 180.2 180.0
C13 C14 C15 H15 0.3 0.0
C13 C14 C19 C18 179.8 179.8
C13 C14 C19 H19 359.8 0.2
H131 C13 N12 C20 33.6 30.4
N12 C13 H131 C14 231.8 240.0
N12 C13 H131 H132 115.9 120.0
C14 C13 H131 H132 244.1 240.0
H131 C13 C14 C15 104.0 330.0
H131 C13 C14 C19 284.3 149.7
H132 C13 N12 C20 143.1 150.4
N12 C13 H132 C14 128.2 120.0
N12 C13 H132 H131 244.1 240.0
C14 C13 H132 H131 115.9 120.0
H132 C13 C14 C15 354.5 210.0
H132 C13 C14 C19 174.8 29.7
C15 C14 C13 H131 104.0 330.0
C15 C14 C13 H132 354.5 210.0
C13 C14 C15 C19 180.3 179.8
C15 C14 C19 C18 0.1 359.6
C15 C14 C19 H19 180.1 180.0
C16 C15 C14 H15 180.0 180.0
C14 C15 C16 C17 360.0 0.0
C14 C15 C16 H16 180.0 180.0
C19 C14 C13 H131 284.3 149.7
C19 C14 C13 H132 174.8 29.7
C13 C14 C19 C15 179.7 180.2
C19 C14 C15 C16 359.9 0.2
C19 C14 C15 H15 179.9 180.2
C17 C18 C19 C14 359.9 0.4
C14 C19 C18 H18 179.9 180.2
C18 C19 C14 H19 180.1 179.6
C16 C15 C14 C19 359.9 0.2
C14 C15 C16 H15 180.0 180.0
C17 C16 C15 H16 180.0 180.1
C15 C16 C17 C18 0.0 359.9
C15 C16 C17 H17 180.0 180.0
H15 C15 C14 C19 179.9 180.2
C14 C15 H15 C16 180.0 180.0
H15 C15 C16 C17 180.0 180.0
H15 C15 C16 H16 360.0 360.0
C17 C16 C15 H15 180.0 180.0
C15 C16 C17 H16 180.0 179.9
C18 C17 C16 H17 180.0 179.9
C16 C17 C18 C19 0.0 359.9
C16 C17 C18 H18 180.0 180.0
H16 C16 C15 H15 360.0 360.0
C15 C16 H16 C17 180.0 180.1
H16 C16 C17 C18 180.0 180.0
H16 C16 C17 H17 0.0 0.1
C14 C19 C18 C17 359.9 0.4
C18 C17 C16 H16 180.0 180.0
C16 C17 C18 H17 180.0 180.1
C19 C18 C17 H18 180.0 179.9
C17 C18 C19 H19 179.9 180.0
H17 C17 C16 H16 0.0 0.1
C16 C17 H17 C18 180.0 179.9
H17 C17 C18 C19 180.0 179.8
H17 C17 C18 H18 0.0 359.9
C14 C19 C18 H19 179.9 180.4
C19 C18 C17 H17 180.0 179.8
C17 C18 C19 H18 180.0 180.1
H18 C18 C17 H17 0.0 359.9
C17 C18 H18 C19 180.0 179.9
H18 C18 C19 H19 359.9 359.9
C14 C19 H19 C18 180.1 179.6
H19 C19 C18 H18 359.9 359.9
C8 C20 O21 N12 180.1 179.5
C9 C22 C23 C27 180.3 179.8
C23 C22 C27 C26 0.2 359.6
C23 C22 C27 H27 180.2 180.0
C24 C23 C22 H23 180.0 180.0
C22 C23 C24 C25 359.9 0.0
C22 C23 C24 H24 179.9 179.9
C9 C22 C27 C23 179.7 180.2
C27 C22 C23 C24 359.9 0.2
C27 C22 C23 H23 179.9 180.2
C25 C26 C27 C22 359.8 0.5
C22 C27 C26 H26 179.8 180.2
C26 C27 C22 H27 180.0 179.6
C24 C23 C22 C27 359.9 0.2
C22 C23 C24 H23 180.0 180.0
C25 C24 C23 H24 180.0 180.1
C23 C24 C25 C26 0.1 360.0
C23 C24 C25 H25 180.2 180.0
H23 C23 C22 C27 179.9 180.2
C22 C23 H23 C24 180.0 180.0
H23 C23 C24 C25 179.9 180.0
H23 C23 C24 H24 359.9 360.0
C25 C24 C23 H23 179.9 180.0
C23 C24 C25 H24 180.0 179.9
C26 C25 C24 H25 180.0 180.0
C24 C25 C26 C27 0.0 359.8
C24 C25 C26 H26 180.1 180.0
H24 C24 C23 H23 359.9 360.0
C23 C24 H24 C25 180.0 180.1
H24 C24 C25 C26 180.1 180.1
H24 C24 C25 H25 0.1 0.1
C22 C27 C26 C25 359.8 0.5
C26 C25 C24 H24 180.1 180.1
C24 C25 C26 H25 180.0 180.0
C27 C26 C25 H26 180.0 179.7
C25 C26 C27 H27 179.8 180.0
H25 C25 C24 H24 0.1 0.1
C24 C25 H25 C26 180.0 180.0
H25 C25 C26 C27 180.0 179.8
H25 C25 C26 H26 0.0 0.0
C22 C27 C26 H27 180.0 180.4
C27 C26 C25 H25 180.0 179.8
C25 C26 C27 H26 180.0 180.3
H26 C26 C25 H25 0.0 0.0
C25 C26 H26 C27 180.0 179.8
H26 C26 C27 H27 359.8 359.8
C22 C27 H27 C26 180.0 179.6
H27 C27 C26 H26 359.8 359.8
C3 C29 C28 H29 180.0 180.5
C6 C28 C29 H28 180.0 180.3
C6 C28 H28 C29 180.0 179.7
H28 C28 C29 H29 359.9 359.8
C3 C29 H29 C28 180.0 179.5
H29 C29 C28 H28 359.9 359.8