Atom Nomenclature for L01

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for L01

Atom Name (V3) Atom Name (V2)
C1 C1
C2 C2
C3 C3
N4 N4
C5 C5
C6 C6
C7 C7
C8 C8
O9 O9
C10 C10
C11 C11
C12 C12
C13 C13
C14 C14
C15 C15
C16 C16
O17 O17
N18 N18
C19 C19
C21 C21
C22 C22
C23 C23
C24 C24
C25 C25
C26 C26
C27 C27
C28 C28
O30 O30
C31 C31
N32 N32
C35 C35
C36 C36
C37 C37
C38 C38
C39 C39
C40 C40
O41 O41
C42 C42
C43 C43
H1C1 1H1C
H1C2 2H1C
H1C3 3H1C
H2C1 1H2C
H2C2 2H2C
H3C1 1H3C
H3C2 2H3C
H5C1 1H5C
H5C2 2H5C
H6C1 1H6C
H6C2 2H6C
H7C1 1H7C
H7C2 2H7C
H7C3 3H7C
H11 H11
H12 H12
H13 H13
H15 H15
H18 H18
H19 H19
H211 1H21
H212 2H21
H23 H23
H24 H24
H25 H25
H26 H26
H27 H27
H28 H28
H30 H30
H311 1H31
H312 2H31
H32 H32
H351 1H35
H352 2H35
H37 H37
H38 H38
H39 H39
H421 1H42
H422 2H42
H423 3H42
H43 H43