Atom Nomenclature for KZQ

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for KZQ

Atom Name (V3) Atom Name (V2)
CAA CAA
NAB NAB
NAC NAC
CAD CAD
CAE CAE
CAF CAF
CAG CAG
CAH CAH
CAI CAI
NAJ NAJ
CAK CAK
OAL OAL
CAM CAM
CAN CAN
NAO NAO
CAP CAP
NAQ NAQ
CAR CAR
CAS CAS
OAT OAT
CAU CAU
CAV CAV
CAW CAW
CAX CAX
CAY CAY
CAZ CAZ
FBA FBA
HAA HAA
HAF HAF
HAG HAG
HAI HAI
HNAJ HNAJ
HNAO HNAO
HNAQ HNAQ
HAR HAR
HAS HAS
HASA HASA
HASB HASB
HAV HAV
HAW HAW
HAY HAY
HAZ HAZ
HNAB HNAB