PDB Chemical Component KYN
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for KYN
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| CA |
C |
1.481 |
1.507 |
| O |
C |
1.219 |
1.209 |
| C |
OXT |
1.241 |
1.342 |
| N |
CA |
1.440 |
1.469 |
| N |
H |
1.000 |
1.009 |
| N |
H2 |
1.000 |
1.009 |
| OXT |
HXT |
0.950 |
0.967 |
| CD2 |
C1 |
1.495 |
1.467 |
| O2 |
C1 |
1.216 |
1.213 |
| C1 |
CB |
1.515 |
1.507 |
| CG |
N1 |
1.351 |
1.386 |
| N1 |
HN1 |
1.000 |
0.970 |
| N1 |
HN1A |
1.000 |
0.971 |
| CB |
CA |
1.526 |
1.530 |
| CA |
HA |
1.100 |
1.090 |
| CB |
HB |
1.100 |
1.089 |
| CB |
HBA |
1.100 |
1.090 |
| CD1 |
CG |
1.389 |
1.389 |
| CD2 |
CG |
1.380 |
1.407 |
| CZ |
CE1 |
1.389 |
1.387 |
| CZ |
CE2 |
1.390 |
1.376 |
| CZ |
HZ |
1.080 |
1.080 |
| CE1 |
CD1 |
1.390 |
1.379 |
| CD1 |
HD1 |
1.080 |
1.080 |
| CE2 |
CD2 |
1.383 |
1.400 |
| CE1 |
HE1 |
1.079 |
1.080 |
| CE2 |
HE2 |
1.080 |
1.080 |
Bond Angles for KYN
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C |
OXT |
HXT |
109.5 |
117.1 |
| CA |
N |
H |
109.5 |
111.0 |
| CA |
N |
H2 |
109.5 |
111.0 |
| N |
CA |
HA |
111.1 |
109.5 |
| H |
N |
H2 |
109.5 |
111.0 |
| O2 |
C1 |
CB |
120.0 |
120.0 |
| C1 |
CB |
CA |
110.3 |
109.4 |
| C1 |
CB |
HB |
109.2 |
109.5 |
| C1 |
CB |
HBA |
109.2 |
109.5 |
| CG |
N1 |
HN1 |
109.5 |
120.0 |
| CG |
N1 |
HN1A |
109.5 |
120.0 |
| HN1 |
N1 |
HN1A |
109.4 |
120.0 |
| CB |
CA |
HA |
109.9 |
109.5 |
| HB |
CB |
HBA |
109.5 |
109.5 |
| CE1 |
CZ |
CE2 |
119.9 |
120.4 |
| CE1 |
CZ |
HZ |
120.1 |
119.8 |
| CZ |
CE1 |
CD1 |
119.6 |
120.5 |
| CZ |
CE1 |
HE1 |
120.2 |
119.7 |
| CE2 |
CZ |
HZ |
120.0 |
119.8 |
| CZ |
CE2 |
CD2 |
120.3 |
119.9 |
| CZ |
CE2 |
HE2 |
119.8 |
120.1 |
| CE1 |
CD1 |
HD1 |
120.0 |
120.0 |
Torsion Angles for KYN
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CA |
C |
OXT |
HXT |
183.0 |
180.0 |
| O |
C |
OXT |
HXT |
360.0 |
359.8 |
| H |
N |
CA |
H2 |
240.0 |
236.1 |
| C1 |
CB |
CA |
N |
276.5 |
295.0 |
| CB |
CA |
N |
HA |
122.0 |
120.0 |
| CA |
N |
H |
H2 |
120.0 |
124.0 |
| H |
N |
CA |
HA |
299.6 |
56.0 |
| CA |
N |
H2 |
H |
240.0 |
236.0 |
| H2 |
N |
CA |
HA |
59.6 |
180.0 |
| CD2 |
C1 |
CB |
HB |
313.3 |
300.0 |
| CD2 |
C1 |
CB |
HBA |
73.0 |
60.0 |
| O2 |
C1 |
CB |
CA |
13.0 |
360.0 |
| O2 |
C1 |
CB |
HB |
133.1 |
120.0 |
| O2 |
C1 |
CB |
HBA |
252.9 |
240.0 |
| C1 |
CB |
CA |
HA |
39.2 |
55.0 |
| HB |
CB |
C1 |
HBA |
240.3 |
240.0 |
| HN1 |
N1 |
CG |
HN1A |
240.1 |
179.9 |
| CG |
N1 |
HN1 |
HN1A |
120.0 |
180.1 |
| CG |
N1 |
HN1A |
HN1 |
240.0 |
179.9 |
| CB |
CA |
N |
H |
61.5 |
176.1 |
| CB |
CA |
N |
H2 |
181.5 |
300.0 |
| N |
CA |
CB |
HA |
237.3 |
240.0 |
| C1 |
CB |
CA |
HB |
120.1 |
120.0 |
| C1 |
CB |
CA |
HBA |
239.9 |
240.0 |
| HA |
CA |
N |
H |
299.6 |
56.0 |
| HA |
CA |
N |
H2 |
59.6 |
180.0 |
| C1 |
CB |
HB |
CA |
239.3 |
240.0 |
| C1 |
CB |
HB |
HBA |
119.6 |
120.0 |
| HB |
CB |
CA |
HA |
279.1 |
295.0 |
| C1 |
CB |
HBA |
CA |
120.7 |
120.0 |
| C1 |
CB |
HBA |
HB |
240.4 |
240.0 |
| HBA |
CB |
CA |
HA |
159.3 |
175.0 |
| CD1 |
CG |
N1 |
HN1 |
180.0 |
5.3 |
| CD1 |
CG |
N1 |
HN1A |
300.0 |
185.4 |
| CD2 |
CG |
N1 |
HN1 |
360.0 |
185.1 |
| CD2 |
CG |
N1 |
HN1A |
119.9 |
5.2 |
| CE2 |
CZ |
CE1 |
HZ |
180.0 |
179.7 |
| CE1 |
CZ |
CE2 |
CD2 |
0.1 |
0.3 |
| CE1 |
CZ |
CE2 |
HE2 |
180.1 |
180.0 |
| CZ |
CE1 |
CD1 |
HD1 |
179.8 |
180.0 |
| CE1 |
CZ |
CE2 |
HZ |
180.0 |
180.3 |
| CE2 |
CZ |
CE1 |
CD1 |
0.0 |
359.7 |
| CE2 |
CZ |
CE1 |
HE1 |
180.0 |
180.0 |
| CE1 |
CZ |
HZ |
CE2 |
180.0 |
179.7 |
| HZ |
CZ |
CE1 |
CD1 |
180.0 |
180.0 |
| HZ |
CZ |
CE1 |
HE1 |
0.0 |
0.2 |
| HZ |
CZ |
CE2 |
CD2 |
180.1 |
180.0 |
| HZ |
CZ |
CE2 |
HE2 |
0.1 |
359.7 |
| CD1 |
CE1 |
CZ |
CE2 |
0.0 |
359.7 |
| CD1 |
CE1 |
CZ |
HZ |
180.0 |
180.0 |
| CZ |
CE1 |
CD1 |
HE1 |
180.0 |
180.3 |
| CD2 |
CE2 |
CZ |
HZ |
180.1 |
180.0 |
| CZ |
CE2 |
CD2 |
HE2 |
180.0 |
179.7 |
| HE1 |
CE1 |
CZ |
CE2 |
180.0 |
180.0 |
| HE1 |
CE1 |
CZ |
HZ |
0.0 |
0.2 |
| CZ |
CE1 |
HE1 |
CD1 |
180.0 |
179.7 |
| HE1 |
CE1 |
CD1 |
HD1 |
359.8 |
359.8 |
| HE2 |
CE2 |
CZ |
HZ |
0.1 |
359.7 |
| CZ |
CE2 |
HE2 |
CD2 |
180.0 |
180.3 |