PDB Chemical Component KYD
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for KYD
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C1 |
C2 |
1.493 |
1.507 |
| C2 |
N3 |
1.334 |
1.305 |
| C2 |
C8 |
1.416 |
1.413 |
| N3 |
N4 |
1.351 |
1.399 |
| N4 |
C6 |
1.342 |
1.343 |
| C6 |
C7 |
1.489 |
1.507 |
| C6 |
C8 |
1.397 |
1.382 |
| C8 |
C9 |
1.473 |
1.473 |
| C9 |
O10 |
1.256 |
1.348 |
| C9 |
O11 |
1.235 |
1.216 |
| C1 |
H11C |
1.100 |
1.089 |
| C1 |
H12C |
1.100 |
1.090 |
| C1 |
H13C |
1.100 |
1.090 |
| N4 |
H4 |
1.000 |
0.970 |
| C7 |
H71C |
1.100 |
1.089 |
| C7 |
H72C |
1.100 |
1.091 |
| C7 |
H73C |
1.100 |
1.090 |
| O10 |
H10 |
0.950 |
0.966 |
Bond Angles for KYD
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C1 |
C2 |
N3 |
120.3 |
126.0 |
| C1 |
C2 |
C8 |
129.2 |
126.0 |
| C2 |
C1 |
H11C |
109.5 |
109.5 |
| C2 |
C1 |
H12C |
109.5 |
109.5 |
| C2 |
C1 |
H13C |
109.5 |
109.4 |
| N3 |
C2 |
C8 |
110.4 |
108.0 |
| C2 |
N3 |
N4 |
106.1 |
108.9 |
| C2 |
C8 |
C6 |
104.4 |
107.2 |
| C2 |
C8 |
C9 |
127.7 |
126.4 |
| N3 |
N4 |
C6 |
112.0 |
108.5 |
| N3 |
N4 |
H4 |
124.0 |
125.7 |
| N4 |
C6 |
C7 |
121.1 |
126.3 |
| N4 |
C6 |
C8 |
107.1 |
107.4 |
| C6 |
N4 |
H4 |
124.0 |
125.8 |
| C7 |
C6 |
C8 |
131.7 |
126.3 |
| C6 |
C7 |
H71C |
109.5 |
109.5 |
| C6 |
C7 |
H72C |
109.5 |
109.5 |
| C6 |
C7 |
H73C |
109.5 |
109.4 |
| C6 |
C8 |
C9 |
127.9 |
126.4 |
| C8 |
C9 |
O10 |
118.9 |
120.0 |
| C8 |
C9 |
O11 |
117.1 |
120.0 |
| O10 |
C9 |
O11 |
124.0 |
120.0 |
| C9 |
O10 |
H10 |
109.5 |
117.0 |
| H11C |
C1 |
H12C |
109.4 |
109.5 |
| H11C |
C1 |
H13C |
109.5 |
109.5 |
| H12C |
C1 |
H13C |
109.5 |
109.4 |
| H71C |
C7 |
H72C |
109.5 |
109.5 |
| H71C |
C7 |
H73C |
109.5 |
109.5 |
| H72C |
C7 |
H73C |
109.5 |
109.5 |
Torsion Angles for KYD
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N3 |
C2 |
C1 |
C8 |
179.5 |
180.3 |
| C1 |
C2 |
N3 |
N4 |
180.1 |
180.0 |
| C1 |
C2 |
C8 |
C6 |
179.7 |
179.9 |
| C1 |
C2 |
C8 |
C9 |
359.6 |
0.0 |
| H11C |
C1 |
C2 |
H12C |
240.0 |
240.0 |
| H11C |
C1 |
C2 |
H13C |
120.0 |
120.0 |
| H12C |
C1 |
C2 |
H13C |
240.0 |
240.1 |
| C1 |
C2 |
N3 |
C8 |
180.4 |
179.7 |
| N3 |
C2 |
C1 |
H11C |
0.0 |
90.0 |
| N3 |
C2 |
C1 |
H12C |
120.0 |
210.1 |
| N3 |
C2 |
C1 |
H13C |
240.0 |
330.0 |
| N3 |
C2 |
C8 |
C6 |
0.1 |
359.6 |
| N3 |
C2 |
C8 |
C9 |
180.0 |
179.8 |
| C2 |
N3 |
N4 |
C6 |
0.3 |
359.9 |
| C2 |
N3 |
N4 |
H4 |
180.3 |
180.0 |
| C1 |
C2 |
C8 |
N3 |
179.6 |
180.3 |
| C8 |
C2 |
C1 |
H11C |
180.5 |
269.7 |
| C8 |
C2 |
C1 |
H12C |
300.5 |
29.8 |
| C8 |
C2 |
C1 |
H13C |
60.5 |
149.7 |
| C8 |
C2 |
N3 |
N4 |
359.8 |
0.3 |
| N4 |
C6 |
C8 |
C2 |
0.1 |
0.3 |
| C7 |
C6 |
C8 |
C2 |
179.9 |
180.1 |
| C6 |
C8 |
C2 |
C9 |
180.1 |
179.9 |
| C2 |
C8 |
C9 |
O10 |
345.9 |
270.1 |
| C2 |
C8 |
C9 |
O11 |
166.1 |
90.1 |
| N4 |
N3 |
C2 |
C8 |
359.8 |
0.3 |
| N3 |
N4 |
C6 |
C7 |
179.9 |
180.1 |
| N3 |
N4 |
C6 |
C8 |
359.8 |
359.8 |
| C6 |
N4 |
N3 |
H4 |
180.0 |
179.9 |
| C2 |
C8 |
C6 |
N4 |
0.1 |
0.3 |
| N3 |
N4 |
C6 |
H4 |
180.0 |
180.1 |
| C7 |
C6 |
N4 |
C8 |
180.1 |
180.2 |
| N4 |
C6 |
C7 |
H71C |
89.9 |
90.0 |
| N4 |
C6 |
C7 |
H72C |
209.9 |
210.0 |
| N4 |
C6 |
C7 |
H73C |
329.9 |
330.0 |
| N4 |
C6 |
C8 |
C9 |
180.1 |
180.2 |
| C2 |
C8 |
C6 |
C7 |
179.9 |
180.1 |
| N4 |
C6 |
C7 |
C8 |
179.8 |
179.7 |
| C7 |
C6 |
N4 |
H4 |
359.9 |
360.0 |
| C7 |
C6 |
C8 |
C9 |
360.0 |
360.0 |
| H71C |
C7 |
C6 |
H72C |
240.0 |
240.0 |
| H71C |
C7 |
C6 |
H73C |
120.0 |
120.0 |
| H72C |
C7 |
C6 |
H73C |
240.0 |
240.0 |
| C2 |
C8 |
C6 |
C9 |
179.9 |
180.1 |
| N4 |
C6 |
C8 |
C7 |
180.2 |
180.2 |
| C8 |
C6 |
N4 |
H4 |
179.8 |
179.8 |
| C8 |
C6 |
C7 |
H71C |
270.1 |
270.3 |
| C8 |
C6 |
C7 |
H72C |
30.1 |
30.3 |
| C8 |
C6 |
C7 |
H73C |
150.1 |
150.2 |
| C6 |
C8 |
C9 |
O10 |
165.8 |
90.2 |
| C6 |
C8 |
C9 |
O11 |
346.0 |
270.2 |
| C2 |
C8 |
C9 |
C6 |
180.1 |
179.9 |
| O10 |
C9 |
C8 |
O11 |
179.8 |
180.0 |
| C8 |
C9 |
O10 |
H10 |
180.2 |
180.0 |
| C8 |
C9 |
O10 |
O11 |
180.2 |
180.0 |
| C8 |
C9 |
O11 |
O10 |
179.8 |
180.0 |
| O11 |
C9 |
O10 |
H10 |
360.0 |
360.0 |
| H11C |
C1 |
C2 |
N3 |
0.0 |
90.0 |
| H11C |
C1 |
C2 |
C8 |
180.5 |
269.7 |
| C2 |
C1 |
H11C |
H12C |
120.0 |
120.0 |
| C2 |
C1 |
H11C |
H13C |
240.0 |
240.0 |
| H12C |
C1 |
H11C |
H13C |
120.0 |
120.0 |
| H12C |
C1 |
C2 |
N3 |
120.0 |
210.1 |
| H12C |
C1 |
C2 |
C8 |
300.5 |
29.8 |
| C2 |
C1 |
H12C |
H11C |
240.0 |
240.0 |
| C2 |
C1 |
H12C |
H13C |
120.0 |
119.9 |
| H11C |
C1 |
H12C |
H13C |
240.0 |
239.9 |
| H13C |
C1 |
C2 |
N3 |
240.0 |
330.0 |
| H13C |
C1 |
C2 |
C8 |
60.5 |
149.7 |
| C2 |
C1 |
H13C |
H11C |
120.0 |
120.0 |
| C2 |
C1 |
H13C |
H12C |
240.0 |
240.0 |
| H11C |
C1 |
H13C |
H12C |
120.0 |
120.1 |
| N3 |
N4 |
H4 |
C6 |
180.0 |
179.9 |
| H4 |
N4 |
C6 |
C7 |
359.9 |
360.0 |
| H4 |
N4 |
C6 |
C8 |
179.8 |
179.8 |
| H71C |
C7 |
C6 |
C8 |
270.1 |
270.3 |
| C6 |
C7 |
H71C |
H72C |
120.0 |
120.0 |
| C6 |
C7 |
H71C |
H73C |
240.0 |
240.0 |
| H72C |
C7 |
H71C |
H73C |
120.0 |
120.0 |
| H72C |
C7 |
C6 |
C8 |
30.1 |
30.3 |
| C6 |
C7 |
H72C |
H71C |
240.0 |
240.0 |
| C6 |
C7 |
H72C |
H73C |
120.0 |
120.0 |
| H71C |
C7 |
H72C |
H73C |
240.0 |
240.0 |
| H73C |
C7 |
C6 |
C8 |
150.1 |
150.2 |
| C6 |
C7 |
H73C |
H71C |
120.0 |
120.0 |
| C6 |
C7 |
H73C |
H72C |
240.0 |
240.0 |
| H71C |
C7 |
H73C |
H72C |
120.0 |
120.0 |
| H10 |
O10 |
C9 |
O11 |
360.0 |
360.0 |