Atom Nomenclature for KXN

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for KXN

Atom Name (V3) Atom Name (V2)
O94 O94
C94 C94
C93 C93
O93 O93
C92 C92
C95 C95
C96 C96
C91 C91
C2 C2
O1 O1
C3 C3
O3 O3
C4 C4
C10 C10
C9 C9
C8 C8
C5 C5
O51 O51
C6 C6
C7 C7
O71 O71
HO94 HO94
HO93 HO93
H92 H92
H95 H95
H96 H96
H2 H2
H3 H3
HO3 HO3
H4 H4
H4A H4A
H8 H8
HO51 HO51
H6 H6
HO71 HO71