Atom Nomenclature for KWZ

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for KWZ

Atom Name (V3) Atom Name (V2)
N1 N1
C2 C2
C3 C3
C4 C4
N5 N5
C6 C6
C7 C7
C8 C8
C9 C9
C10 C10
N11 N11
C12 C12
C13 C13
C14 C14
C15 C15
C16 C16
C17 C17
F18 F18
F19 F19
F20 F20
C21 C21
C22 C22
C23 C23
C24 C24
C25 C25
C26 C26
N27 N27
H3 H3
H8 H8
H8A H8A
H9 H9
H9A H9A
H10 H10
H10A H10A
H12 H12
H14 H14
H15 H15
H16 H16
H21 H21
H21A H21A
H22 H22
H22A H22A
H23 H23
H23A H23A
H24 H24
H24A H24A
H25 H25
H25A H25A