Atom Nomenclature for KUM

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for KUM

Atom Name (V3) Atom Name (V2)
C01 C1
C03 C2
C07 C3
C09 C4
C13 C5
C15 C6
C19 C7
C21 C8
C22 C9
C24 C10
C26 C11
C28 C12
C29 C13
C33 C14
C34 C15
C35 C16
C36 C17
C40 C18
C42 C19
C44 C20
C46 C21
N27 N1
N31 N2
N38 N3
O02 O1
O08 O2
O14 O3
O25 O4
H1 H1
H2 H2
H3 H3
H4 H4
H5 H5
H6 H6
H7 H7
H8 H8
H9 H9
H10 H10
H11 H11
H12 H12
H13 H13
H14 H14
H15 H15
H16 H16
H17 H17
H18 H18
H20 H20