PDB Chemical Component KTD
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for KTD
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N1 |
N2 |
1.311 |
1.272 |
| N1 |
SAP |
1.663 |
1.566 |
| N2 |
CAU |
1.359 |
1.338 |
| SAP |
CAV |
1.767 |
1.765 |
| CAU |
CAV |
1.356 |
1.409 |
| CAU |
CAI |
1.336 |
1.408 |
| CAV |
CAJ |
1.356 |
1.383 |
| CAI |
CAH |
1.394 |
1.361 |
| CAJ |
CAS |
1.403 |
1.385 |
| CAH |
CAS |
1.396 |
1.395 |
| CAS |
N3 |
1.362 |
1.400 |
| OAB |
CAR |
1.232 |
1.215 |
| N3 |
CAR |
1.369 |
1.348 |
| CAR |
N |
1.347 |
1.348 |
| N |
CA |
1.484 |
1.465 |
| CA |
C |
1.546 |
1.507 |
| C |
O |
1.227 |
1.213 |
| C |
CAT |
1.404 |
1.472 |
| CAG |
CAT |
1.402 |
1.399 |
| CAG |
CAE |
1.395 |
1.378 |
| CAT |
CAF |
1.408 |
1.398 |
| CAE |
CAC |
1.399 |
1.385 |
| CAF |
CAD |
1.400 |
1.379 |
| CAC |
CAD |
1.399 |
1.383 |
| CAJ |
H1 |
1.079 |
1.081 |
| CAI |
H2 |
1.080 |
1.080 |
| CAH |
H3 |
1.080 |
1.081 |
| N3 |
H4 |
1.000 |
0.970 |
| N |
H5 |
1.000 |
0.970 |
| CA |
H6 |
1.100 |
1.090 |
| CA |
H7 |
1.100 |
1.089 |
| CAF |
H8 |
1.080 |
1.080 |
| CAD |
H9 |
1.080 |
1.080 |
| CAC |
H10 |
1.080 |
1.080 |
| CAE |
H11 |
1.080 |
1.080 |
| CAG |
H12 |
1.080 |
1.080 |
Bond Angles for KTD
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N1 |
N2 |
CAU |
117.9 |
120.0 |
| N2 |
CAU |
CAI |
127.3 |
131.9 |
| CAU |
CAI |
CAH |
121.2 |
120.3 |
| CAU |
CAI |
H2 |
119.4 |
119.9 |
| CAV |
CAJ |
CAS |
120.7 |
119.4 |
| CAV |
CAJ |
H1 |
119.6 |
120.3 |
| CAI |
CAH |
CAS |
120.4 |
121.2 |
| CAH |
CAI |
H2 |
119.4 |
119.9 |
| CAI |
CAH |
H3 |
119.8 |
119.4 |
| CAJ |
CAS |
CAH |
116.5 |
119.9 |
| CAJ |
CAS |
N3 |
126.9 |
120.1 |
| CAS |
CAJ |
H1 |
119.7 |
120.3 |
| CAH |
CAS |
N3 |
116.6 |
120.1 |
| CAS |
CAH |
H3 |
119.8 |
119.4 |
| CAS |
N3 |
CAR |
127.5 |
120.0 |
| CAS |
N3 |
H4 |
116.2 |
120.0 |
| OAB |
CAR |
N |
120.6 |
120.1 |
| N3 |
CAR |
N |
114.9 |
120.0 |
| CAR |
N3 |
H4 |
116.3 |
120.0 |
| CAR |
N |
CA |
124.4 |
119.9 |
| CAR |
N |
H5 |
117.8 |
120.0 |
| N |
CA |
C |
113.0 |
109.4 |
| CA |
N |
H5 |
117.8 |
120.0 |
| N |
CA |
H6 |
108.6 |
109.4 |
| N |
CA |
H7 |
108.6 |
109.4 |
| CA |
C |
O |
121.0 |
120.0 |
| CA |
C |
CAT |
117.5 |
120.0 |
| C |
CA |
H6 |
108.6 |
109.4 |
| C |
CA |
H7 |
108.6 |
109.5 |
| O |
C |
CAT |
121.5 |
120.0 |
| C |
CAT |
CAF |
119.8 |
120.2 |
| CAG |
CAE |
H11 |
119.7 |
120.0 |
| CAT |
CAF |
CAD |
120.6 |
119.8 |
| CAT |
CAF |
H8 |
119.7 |
120.1 |
| CAE |
CAC |
H10 |
120.2 |
119.8 |
| CAD |
CAF |
H8 |
119.7 |
120.1 |
| CAF |
CAD |
H9 |
120.0 |
119.9 |
| CAC |
CAD |
H9 |
120.0 |
119.9 |
| H6 |
CA |
H7 |
109.5 |
109.5 |
Torsion Angles for KTD
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N1 |
N2 |
CAU |
CAI |
179.5 |
180.0 |
| N2 |
CAU |
CAI |
CAH |
180.1 |
180.0 |
| N2 |
CAU |
CAI |
H2 |
0.1 |
360.0 |
| SAP |
CAV |
CAJ |
CAS |
180.4 |
180.0 |
| SAP |
CAV |
CAJ |
H1 |
0.4 |
359.7 |
| CAU |
CAV |
CAJ |
CAS |
0.6 |
360.0 |
| CAU |
CAV |
CAJ |
H1 |
180.6 |
179.7 |
| CAU |
CAI |
CAH |
CAS |
0.1 |
0.1 |
| CAH |
CAI |
CAU |
H2 |
180.0 |
180.0 |
| CAU |
CAI |
CAH |
H3 |
180.1 |
180.0 |
| CAV |
CAJ |
CAS |
CAH |
359.1 |
0.1 |
| CAV |
CAJ |
CAS |
N3 |
181.2 |
179.7 |
| CAS |
CAJ |
CAV |
H1 |
180.0 |
180.3 |
| CAU |
CAI |
CAH |
H2 |
180.0 |
180.0 |
| CAJ |
CAS |
CAH |
CAI |
0.5 |
359.9 |
| CAI |
CAH |
CAS |
N3 |
178.7 |
180.3 |
| CAS |
CAH |
CAI |
H3 |
180.0 |
180.1 |
| CAV |
CAJ |
CAS |
H1 |
180.0 |
179.7 |
| CAI |
CAH |
CAS |
CAJ |
0.5 |
359.9 |
| CAH |
CAS |
CAJ |
N3 |
178.0 |
180.4 |
| CAJ |
CAS |
CAH |
H3 |
180.5 |
180.0 |
| CAJ |
CAS |
N3 |
CAR |
345.6 |
33.3 |
| CAJ |
CAS |
N3 |
H4 |
165.6 |
213.3 |
| CAS |
CAH |
CAI |
H2 |
180.1 |
180.1 |
| CAI |
CAH |
CAS |
H3 |
180.0 |
179.9 |
| CAJ |
CAS |
CAH |
N3 |
181.8 |
179.6 |
| CAH |
CAS |
CAJ |
H1 |
179.2 |
180.3 |
| CAH |
CAS |
N3 |
CAR |
167.6 |
212.9 |
| CAH |
CAS |
N3 |
H4 |
347.6 |
32.8 |
| CAJ |
CAS |
N3 |
CAH |
178.0 |
180.4 |
| N3 |
CAS |
CAJ |
H1 |
1.2 |
359.9 |
| N3 |
CAS |
CAH |
H3 |
358.7 |
0.4 |
| CAS |
N3 |
CAR |
N |
177.7 |
185.3 |
| CAR |
N3 |
CAS |
H4 |
180.0 |
180.1 |
| N3 |
CAR |
OAB |
N |
179.7 |
180.1 |
| OAB |
CAR |
N3 |
H4 |
178.0 |
185.3 |
| OAB |
CAR |
N |
CA |
357.2 |
0.0 |
| OAB |
CAR |
N |
H5 |
177.2 |
180.1 |
| CAS |
N3 |
CAR |
H4 |
180.0 |
179.9 |
| OAB |
CAR |
N3 |
N |
180.3 |
179.9 |
| N3 |
CAR |
N |
CA |
177.5 |
180.0 |
| N3 |
CAR |
N |
H5 |
357.5 |
0.0 |
| N |
CAR |
N3 |
H4 |
357.7 |
5.3 |
| CAR |
N |
CA |
C |
101.2 |
180.0 |
| CA |
N |
CAR |
H5 |
180.0 |
180.0 |
| CAR |
N |
CA |
H6 |
221.7 |
300.0 |
| CAR |
N |
CA |
H7 |
340.7 |
60.0 |
| CAR |
N |
CA |
H5 |
180.0 |
180.0 |
| N |
CA |
C |
O |
3.0 |
359.9 |
| N |
CA |
C |
CAT |
184.0 |
180.0 |
| C |
CA |
N |
H6 |
239.5 |
240.1 |
| C |
CA |
N |
H7 |
120.5 |
120.0 |
| H6 |
CA |
N |
H7 |
241.0 |
240.0 |
| C |
CA |
N |
H5 |
281.2 |
360.0 |
| N |
CA |
C |
H6 |
120.5 |
119.9 |
| N |
CA |
C |
H7 |
239.5 |
240.0 |
| O |
C |
CA |
CAT |
179.0 |
179.9 |
| CA |
C |
CAT |
CAF |
185.1 |
179.9 |
| H6 |
CA |
C |
H7 |
118.9 |
120.1 |
| CA |
C |
O |
CAT |
181.0 |
180.1 |
| O |
C |
CA |
H6 |
242.5 |
240.0 |
| O |
C |
CA |
H7 |
123.5 |
119.9 |
| O |
C |
CAT |
CAF |
6.1 |
0.1 |
| CA |
C |
CAT |
O |
179.0 |
179.9 |
| CAT |
C |
CA |
H6 |
63.5 |
60.1 |
| CAT |
C |
CA |
H7 |
304.5 |
300.0 |
| C |
CAT |
CAF |
CAD |
180.3 |
180.0 |
| C |
CAT |
CAF |
H8 |
0.3 |
360.0 |
| CAG |
CAT |
CAF |
H8 |
179.9 |
180.3 |
| CAG |
CAE |
CAC |
H10 |
179.8 |
179.7 |
| CAD |
CAF |
CAT |
H8 |
180.0 |
180.0 |
| CAT |
CAF |
CAD |
H9 |
179.8 |
180.1 |
| CAE |
CAC |
CAD |
H9 |
180.4 |
180.0 |
| CAT |
CAF |
CAD |
H8 |
180.0 |
180.0 |
| CAC |
CAD |
CAF |
H9 |
180.0 |
180.0 |
| CAC |
CAD |
CAF |
H8 |
179.8 |
180.0 |
| CAF |
CAD |
CAC |
H9 |
180.0 |
180.0 |
| CAV |
CAJ |
H1 |
CAS |
180.0 |
180.3 |
| H1 |
CAJ |
CAS |
CAH |
179.2 |
180.3 |
| H1 |
CAJ |
CAS |
N3 |
1.2 |
359.9 |
| CAU |
CAI |
H2 |
CAH |
180.0 |
180.0 |
| H2 |
CAI |
CAH |
CAS |
180.1 |
180.1 |
| H2 |
CAI |
CAH |
H3 |
0.1 |
359.9 |
| CAI |
CAH |
H3 |
CAS |
180.0 |
180.1 |
| H3 |
CAH |
CAI |
H2 |
0.1 |
359.9 |
| H3 |
CAH |
CAS |
N3 |
358.7 |
0.4 |
| CAS |
N3 |
H4 |
CAR |
180.0 |
180.1 |
| H4 |
N3 |
CAR |
N |
357.7 |
5.3 |
| CAR |
N |
H5 |
CA |
180.0 |
180.0 |
| H5 |
N |
CA |
C |
281.2 |
360.0 |
| H5 |
N |
CA |
H6 |
41.7 |
119.9 |
| H5 |
N |
CA |
H7 |
160.7 |
240.0 |
| N |
CA |
H6 |
C |
236.8 |
240.1 |
| H6 |
CA |
N |
H5 |
41.7 |
119.9 |
| N |
CA |
H6 |
H7 |
118.4 |
120.0 |
| H6 |
CA |
C |
O |
242.5 |
240.0 |
| H6 |
CA |
C |
CAT |
63.5 |
60.1 |
| C |
CA |
H6 |
H7 |
241.6 |
239.9 |
| N |
CA |
H7 |
C |
123.2 |
120.0 |
| H7 |
CA |
N |
H5 |
160.7 |
240.0 |
| N |
CA |
H7 |
H6 |
241.6 |
240.0 |
| H7 |
CA |
C |
O |
123.5 |
119.9 |
| H7 |
CA |
C |
CAT |
304.5 |
300.0 |
| C |
CA |
H7 |
H6 |
118.4 |
120.0 |
| CAT |
CAF |
H8 |
CAD |
180.0 |
180.0 |
| H8 |
CAF |
CAD |
H9 |
359.8 |
0.0 |
| H9 |
CAD |
CAF |
H8 |
359.8 |
0.0 |
| H10 |
CAC |
CAD |
H9 |
0.4 |
359.9 |
| H11 |
CAE |
CAC |
H10 |
359.8 |
0.0 |
| H12 |
CAG |
CAE |
H11 |
360.0 |
0.0 |