PDB Chemical Component KSS
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for KSS
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C1 |
N2 |
1.338 |
1.375 |
| C1 |
N5 |
1.345 |
1.322 |
| C1 |
C6 |
1.378 |
1.408 |
| N2 |
C3 |
1.444 |
1.372 |
| N2 |
C9 |
1.326 |
1.367 |
| C3 |
C4 |
1.504 |
1.349 |
| C4 |
N5 |
1.370 |
1.338 |
| C6 |
C7 |
1.381 |
1.382 |
| C7 |
N8 |
1.356 |
1.343 |
| C7 |
C21 |
1.486 |
1.481 |
| N8 |
C9 |
1.348 |
1.314 |
| C9 |
S12 |
1.705 |
1.761 |
| S12 |
C13 |
1.768 |
1.810 |
| C13 |
C14 |
1.514 |
1.531 |
| C21 |
C22 |
1.398 |
1.395 |
| C21 |
C26 |
1.394 |
1.396 |
| C22 |
C23 |
1.399 |
1.380 |
| C23 |
C24 |
1.403 |
1.386 |
| C24 |
C25 |
1.503 |
1.393 |
| C24 |
O30 |
1.389 |
1.359 |
| C25 |
C26 |
1.391 |
1.382 |
| C25 |
O31 |
1.376 |
1.361 |
| O30 |
C32 |
1.436 |
1.429 |
| O31 |
C36 |
1.430 |
1.428 |
| C3 |
H3 |
1.080 |
1.080 |
| C4 |
H4 |
1.079 |
1.081 |
| C6 |
H6 |
1.080 |
1.080 |
| C13 |
H13 |
1.100 |
1.090 |
| C13 |
H13A |
1.100 |
1.090 |
| C14 |
H14 |
1.100 |
1.090 |
| C14 |
H14A |
1.100 |
1.089 |
| C14 |
H14B |
1.100 |
1.090 |
| C22 |
H22 |
1.080 |
1.079 |
| C23 |
H23 |
1.080 |
1.080 |
| C26 |
H26 |
1.080 |
1.080 |
| C32 |
H32 |
1.100 |
1.090 |
| C32 |
H32A |
1.100 |
1.090 |
| C32 |
H32B |
1.100 |
1.090 |
| C36 |
H36 |
1.100 |
1.090 |
| C36 |
H36A |
1.100 |
1.090 |
| C36 |
H36B |
1.101 |
1.089 |
Bond Angles for KSS
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N2 |
C1 |
N5 |
107.1 |
108.1 |
| N2 |
C1 |
C6 |
120.5 |
118.6 |
| C1 |
N2 |
C3 |
115.2 |
106.8 |
| C1 |
N2 |
C9 |
122.5 |
119.9 |
| N5 |
C1 |
C6 |
132.4 |
133.3 |
| C1 |
N5 |
C4 |
110.6 |
109.2 |
| C1 |
C6 |
C7 |
117.3 |
118.5 |
| C1 |
C6 |
H6 |
121.4 |
120.8 |
| C3 |
N2 |
C9 |
122.3 |
133.3 |
| N2 |
C3 |
C4 |
97.6 |
107.1 |
| N2 |
C3 |
H3 |
131.2 |
126.4 |
| N2 |
C9 |
N8 |
118.2 |
121.1 |
| N2 |
C9 |
S12 |
120.5 |
119.5 |
| C3 |
C4 |
N5 |
109.5 |
108.8 |
| C4 |
C3 |
H3 |
131.2 |
126.5 |
| C3 |
C4 |
H4 |
125.2 |
125.6 |
| N5 |
C4 |
H4 |
125.3 |
125.6 |
| C6 |
C7 |
N8 |
119.6 |
120.2 |
| C6 |
C7 |
C21 |
121.2 |
119.9 |
| C7 |
C6 |
H6 |
121.3 |
120.7 |
| N8 |
C7 |
C21 |
119.2 |
119.9 |
| C7 |
N8 |
C9 |
121.9 |
121.7 |
| C7 |
C21 |
C22 |
121.7 |
120.1 |
| C7 |
C21 |
C26 |
116.9 |
120.1 |
| N8 |
C9 |
S12 |
121.3 |
119.5 |
| C9 |
S12 |
C13 |
107.6 |
100.0 |
| S12 |
C13 |
C14 |
110.3 |
109.5 |
| S12 |
C13 |
H13 |
109.2 |
109.5 |
| S12 |
C13 |
H13A |
109.2 |
109.5 |
| C14 |
C13 |
H13 |
109.2 |
109.5 |
| C14 |
C13 |
H13A |
109.2 |
109.4 |
| C13 |
C14 |
H14 |
109.5 |
109.4 |
| C13 |
C14 |
H14A |
109.5 |
109.5 |
| C13 |
C14 |
H14B |
109.5 |
109.4 |
| C22 |
C21 |
C26 |
121.3 |
119.8 |
| C21 |
C22 |
C23 |
120.4 |
120.0 |
| C21 |
C22 |
H22 |
119.8 |
120.0 |
| C21 |
C26 |
C25 |
120.6 |
119.9 |
| C21 |
C26 |
H26 |
119.7 |
120.0 |
| C22 |
C23 |
C24 |
120.8 |
120.2 |
| C23 |
C22 |
H22 |
119.8 |
120.0 |
| C22 |
C23 |
H23 |
119.6 |
120.0 |
| C23 |
C24 |
C25 |
118.1 |
120.1 |
| C23 |
C24 |
O30 |
119.3 |
120.0 |
| C24 |
C23 |
H23 |
119.6 |
119.9 |
| C25 |
C24 |
O30 |
122.6 |
119.9 |
| C24 |
C25 |
C26 |
118.7 |
120.0 |
| C24 |
C25 |
O31 |
122.5 |
120.0 |
| C24 |
O30 |
C32 |
123.6 |
117.0 |
| C26 |
C25 |
O31 |
118.7 |
120.0 |
| C25 |
C26 |
H26 |
119.7 |
120.1 |
| C25 |
O31 |
C36 |
122.3 |
117.0 |
| O30 |
C32 |
H32 |
109.5 |
109.5 |
| O30 |
C32 |
H32A |
109.4 |
109.4 |
| O30 |
C32 |
H32B |
109.5 |
109.5 |
| O31 |
C36 |
H36 |
109.5 |
109.5 |
| O31 |
C36 |
H36A |
109.5 |
109.5 |
| O31 |
C36 |
H36B |
109.5 |
109.5 |
| H13 |
C13 |
H13A |
109.8 |
109.4 |
| H14 |
C14 |
H14A |
109.5 |
109.5 |
| H14 |
C14 |
H14B |
109.5 |
109.5 |
| H14A |
C14 |
H14B |
109.5 |
109.5 |
| H32 |
C32 |
H32A |
109.5 |
109.4 |
| H32 |
C32 |
H32B |
109.5 |
109.5 |
| H32A |
C32 |
H32B |
109.5 |
109.5 |
| H36 |
C36 |
H36A |
109.4 |
109.4 |
| H36 |
C36 |
H36B |
109.5 |
109.5 |
| H36A |
C36 |
H36B |
109.5 |
109.5 |
Torsion Angles for KSS
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N5 |
C1 |
N2 |
C6 |
180.4 |
180.2 |
| N2 |
C1 |
N5 |
C4 |
0.1 |
0.1 |
| N2 |
C1 |
C6 |
C7 |
359.9 |
0.0 |
| N2 |
C1 |
C6 |
H6 |
179.9 |
180.0 |
| C3 |
N2 |
C1 |
C9 |
180.4 |
180.0 |
| C1 |
N2 |
C3 |
C4 |
358.5 |
360.0 |
| C1 |
N2 |
C3 |
H3 |
178.5 |
180.0 |
| C1 |
N2 |
C9 |
N8 |
0.3 |
0.4 |
| C1 |
N2 |
C9 |
S12 |
181.2 |
180.0 |
| N2 |
C1 |
N5 |
C6 |
179.6 |
179.7 |
| N5 |
C1 |
N2 |
C3 |
1.0 |
360.0 |
| N5 |
C1 |
N2 |
C9 |
180.5 |
180.0 |
| N5 |
C1 |
C6 |
C7 |
179.5 |
179.7 |
| N5 |
C1 |
C6 |
H6 |
359.5 |
359.7 |
| C3 |
C4 |
N5 |
C1 |
358.9 |
359.9 |
| C1 |
N5 |
C4 |
H4 |
178.9 |
180.0 |
| N2 |
C1 |
C6 |
N5 |
180.5 |
180.3 |
| C6 |
C1 |
N2 |
C3 |
180.6 |
179.8 |
| C6 |
C1 |
N2 |
C9 |
0.2 |
359.8 |
| C6 |
C1 |
N5 |
C4 |
180.5 |
180.3 |
| C1 |
C6 |
C7 |
N8 |
359.5 |
360.0 |
| C1 |
C6 |
C7 |
C21 |
179.6 |
180.0 |
| C7 |
C6 |
C1 |
H6 |
180.0 |
180.0 |
| C3 |
N2 |
C1 |
N5 |
1.0 |
360.0 |
| C3 |
N2 |
C1 |
C6 |
180.6 |
179.8 |
| C1 |
N2 |
C3 |
C9 |
179.6 |
180.1 |
| C3 |
N2 |
C9 |
N8 |
179.8 |
180.5 |
| C3 |
N2 |
C9 |
S12 |
0.7 |
0.0 |
| N2 |
C3 |
C4 |
N5 |
1.5 |
0.0 |
| C4 |
C3 |
N2 |
H3 |
180.0 |
180.0 |
| N2 |
C3 |
C4 |
H4 |
181.5 |
180.0 |
| C9 |
N2 |
C1 |
N5 |
180.5 |
180.0 |
| C9 |
N2 |
C1 |
C6 |
0.2 |
359.8 |
| C1 |
N2 |
C9 |
C3 |
180.5 |
179.9 |
| C9 |
N2 |
C3 |
C4 |
178.9 |
179.9 |
| C9 |
N2 |
C3 |
H3 |
359.0 |
360.0 |
| C7 |
N8 |
C9 |
N2 |
359.2 |
359.6 |
| N8 |
C9 |
N2 |
S12 |
179.0 |
180.4 |
| N2 |
C9 |
S12 |
C13 |
183.2 |
180.0 |
| C1 |
N5 |
C4 |
C3 |
358.9 |
359.9 |
| C4 |
C3 |
N2 |
C9 |
178.9 |
179.9 |
| N2 |
C3 |
C4 |
H3 |
180.0 |
180.0 |
| N5 |
C4 |
C3 |
H4 |
180.0 |
180.1 |
| C4 |
N5 |
C1 |
C6 |
180.5 |
180.3 |
| N5 |
C4 |
C3 |
H3 |
181.4 |
180.0 |
| C3 |
C4 |
N5 |
H4 |
180.0 |
179.9 |
| C1 |
C6 |
C7 |
H6 |
180.0 |
180.0 |
| N8 |
C7 |
C6 |
C21 |
179.9 |
180.0 |
| C6 |
C7 |
N8 |
C9 |
0.9 |
0.2 |
| C6 |
C7 |
C21 |
C22 |
2.2 |
360.0 |
| C6 |
C7 |
C21 |
C26 |
184.4 |
179.7 |
| N2 |
C9 |
N8 |
C7 |
359.2 |
359.6 |
| C6 |
C7 |
N8 |
C21 |
180.1 |
180.0 |
| N8 |
C7 |
C6 |
H6 |
179.5 |
180.0 |
| N8 |
C7 |
C21 |
C22 |
182.2 |
180.0 |
| N8 |
C7 |
C21 |
C26 |
4.5 |
359.8 |
| C7 |
N8 |
C9 |
S12 |
178.2 |
180.0 |
| C6 |
C7 |
C21 |
N8 |
179.9 |
180.0 |
| C21 |
C7 |
C6 |
H6 |
359.6 |
0.1 |
| C21 |
C7 |
N8 |
C9 |
180.9 |
180.2 |
| C22 |
C21 |
C7 |
C26 |
177.7 |
180.2 |
| C7 |
C21 |
C22 |
C23 |
180.3 |
180.0 |
| C7 |
C21 |
C22 |
H22 |
0.3 |
360.0 |
| C7 |
C21 |
C26 |
C25 |
178.8 |
179.7 |
| C7 |
C21 |
C26 |
H26 |
358.8 |
360.0 |
| N2 |
C9 |
N8 |
S12 |
181.0 |
179.6 |
| C9 |
N8 |
C7 |
C21 |
180.9 |
180.2 |
| N8 |
C9 |
S12 |
C13 |
4.2 |
359.6 |
| N2 |
C9 |
S12 |
N8 |
179.0 |
180.4 |
| C9 |
S12 |
C13 |
C14 |
298.4 |
180.0 |
| C9 |
S12 |
C13 |
H13 |
58.4 |
300.0 |
| C9 |
S12 |
C13 |
H13A |
178.4 |
60.0 |
| C14 |
C13 |
S12 |
H13 |
240.0 |
240.0 |
| C14 |
C13 |
S12 |
H13A |
120.0 |
120.0 |
| S12 |
C13 |
C14 |
H14 |
180.0 |
60.0 |
| S12 |
C13 |
C14 |
H14A |
300.0 |
180.0 |
| S12 |
C13 |
C14 |
H14B |
60.0 |
300.1 |
| H13 |
C13 |
S12 |
H13A |
240.0 |
240.0 |
| S12 |
C13 |
C14 |
H13 |
120.0 |
120.0 |
| S12 |
C13 |
C14 |
H13A |
240.0 |
240.0 |
| H13 |
C13 |
C14 |
H13A |
120.0 |
119.9 |
| H14 |
C14 |
C13 |
H14A |
240.0 |
240.0 |
| H14 |
C14 |
C13 |
H14B |
120.0 |
120.0 |
| H14A |
C14 |
C13 |
H14B |
240.0 |
239.9 |
| C7 |
C21 |
C22 |
C26 |
182.4 |
179.8 |
| C22 |
C21 |
C26 |
C25 |
1.0 |
359.4 |
| C22 |
C21 |
C26 |
H26 |
181.0 |
179.7 |
| C21 |
C22 |
C23 |
C24 |
1.0 |
360.0 |
| C23 |
C22 |
C21 |
H22 |
180.0 |
180.1 |
| C21 |
C22 |
C23 |
H23 |
181.0 |
180.0 |
| C7 |
C21 |
C26 |
C22 |
177.7 |
180.2 |
| C26 |
C21 |
C22 |
C23 |
357.9 |
0.3 |
| C26 |
C21 |
C22 |
H22 |
177.9 |
180.2 |
| C24 |
C25 |
C26 |
C21 |
0.9 |
0.6 |
| C21 |
C26 |
C25 |
O31 |
178.3 |
180.3 |
| C25 |
C26 |
C21 |
H26 |
180.0 |
179.7 |
| C23 |
C22 |
C21 |
C26 |
357.9 |
0.3 |
| C21 |
C22 |
C23 |
H22 |
180.0 |
179.9 |
| C22 |
C23 |
C24 |
C25 |
0.9 |
0.0 |
| C22 |
C23 |
C24 |
O30 |
180.7 |
180.0 |
| C24 |
C23 |
C22 |
H23 |
180.0 |
180.0 |
| C24 |
C23 |
C22 |
H22 |
181.0 |
180.1 |
| C22 |
C23 |
C24 |
H23 |
180.0 |
180.0 |
| C25 |
C24 |
C23 |
O30 |
180.2 |
180.0 |
| C23 |
C24 |
C25 |
C26 |
358.1 |
359.7 |
| C23 |
C24 |
C25 |
O31 |
180.8 |
180.0 |
| C23 |
C24 |
O30 |
C32 |
175.2 |
0.0 |
| C21 |
C26 |
C25 |
C24 |
0.9 |
0.6 |
| C23 |
C24 |
C25 |
O30 |
179.8 |
180.0 |
| C25 |
C24 |
C23 |
H23 |
180.9 |
180.0 |
| C25 |
C24 |
O30 |
C32 |
355.0 |
180.0 |
| C26 |
C25 |
C24 |
O31 |
177.3 |
179.8 |
| C24 |
C25 |
C26 |
H26 |
180.9 |
180.3 |
| C24 |
C25 |
O31 |
C36 |
244.4 |
180.0 |
| C23 |
C24 |
O30 |
C25 |
180.2 |
180.0 |
| O30 |
C24 |
C23 |
H23 |
0.7 |
360.0 |
| O30 |
C24 |
C25 |
C26 |
178.3 |
179.8 |
| O30 |
C24 |
C25 |
O31 |
1.1 |
0.0 |
| C24 |
O30 |
C32 |
H32 |
180.0 |
300.0 |
| C24 |
O30 |
C32 |
H32A |
300.0 |
60.0 |
| C24 |
O30 |
C32 |
H32B |
60.0 |
180.0 |
| C21 |
C26 |
C25 |
H26 |
180.0 |
180.3 |
| C26 |
C25 |
C24 |
O30 |
178.3 |
179.8 |
| C24 |
C25 |
C26 |
O31 |
182.6 |
180.2 |
| C26 |
C25 |
O31 |
C36 |
67.2 |
0.2 |
| O31 |
C25 |
C24 |
O30 |
1.1 |
0.0 |
| C24 |
C25 |
O31 |
C26 |
177.3 |
179.8 |
| O31 |
C25 |
C26 |
H26 |
358.3 |
0.0 |
| C25 |
O31 |
C36 |
H36 |
180.0 |
180.0 |
| C25 |
O31 |
C36 |
H36A |
300.0 |
300.0 |
| C25 |
O31 |
C36 |
H36B |
60.0 |
60.0 |
| H32 |
C32 |
O30 |
H32A |
240.0 |
240.1 |
| H32 |
C32 |
O30 |
H32B |
120.0 |
120.1 |
| H32A |
C32 |
O30 |
H32B |
240.0 |
240.0 |
| H36 |
C36 |
O31 |
H36A |
240.0 |
240.1 |
| H36 |
C36 |
O31 |
H36B |
120.0 |
120.0 |
| H36A |
C36 |
O31 |
H36B |
240.0 |
239.9 |
| H3 |
C3 |
N2 |
C9 |
359.0 |
360.0 |
| N2 |
C3 |
H3 |
C4 |
180.0 |
180.0 |
| H3 |
C3 |
C4 |
N5 |
181.4 |
180.0 |
| H3 |
C3 |
C4 |
H4 |
1.4 |
359.9 |
| C3 |
C4 |
H4 |
N5 |
180.0 |
180.1 |
| H4 |
C4 |
C3 |
H3 |
1.4 |
359.9 |
| C1 |
C6 |
H6 |
C7 |
180.0 |
180.0 |
| H6 |
C6 |
C7 |
N8 |
179.5 |
180.0 |
| H6 |
C6 |
C7 |
C21 |
359.6 |
0.1 |
| S12 |
C13 |
H13 |
C14 |
239.4 |
240.0 |
| S12 |
C13 |
H13 |
H13A |
119.7 |
120.0 |
| C14 |
C13 |
H13 |
H13A |
240.3 |
240.1 |
| H13 |
C13 |
C14 |
H14 |
60.0 |
300.0 |
| H13 |
C13 |
C14 |
H14A |
180.0 |
60.0 |
| H13 |
C13 |
C14 |
H14B |
300.0 |
180.0 |
| S12 |
C13 |
H13A |
C14 |
120.7 |
120.0 |
| S12 |
C13 |
H13A |
H13 |
240.3 |
240.0 |
| C14 |
C13 |
H13A |
H13 |
119.7 |
120.0 |
| H13A |
C13 |
C14 |
H14 |
300.0 |
180.0 |
| H13A |
C13 |
C14 |
H14A |
60.0 |
300.0 |
| H13A |
C13 |
C14 |
H14B |
180.0 |
60.1 |
| H14 |
C14 |
C13 |
H13 |
60.0 |
300.0 |
| H14 |
C14 |
C13 |
H13A |
300.0 |
180.0 |
| C13 |
C14 |
H14 |
H14A |
120.0 |
120.0 |
| C13 |
C14 |
H14 |
H14B |
240.0 |
240.1 |
| H14A |
C14 |
H14 |
H14B |
120.0 |
120.1 |
| H14A |
C14 |
C13 |
H13 |
180.0 |
60.0 |
| H14A |
C14 |
C13 |
H13A |
60.0 |
300.0 |
| C13 |
C14 |
H14A |
H14 |
240.0 |
240.1 |
| C13 |
C14 |
H14A |
H14B |
120.0 |
120.0 |
| H14 |
C14 |
H14A |
H14B |
240.0 |
239.9 |
| H14B |
C14 |
C13 |
H13 |
300.0 |
180.0 |
| H14B |
C14 |
C13 |
H13A |
180.0 |
60.1 |
| C13 |
C14 |
H14B |
H14 |
120.0 |
119.9 |
| C13 |
C14 |
H14B |
H14A |
240.0 |
240.0 |
| H14 |
C14 |
H14B |
H14A |
120.0 |
120.0 |
| H22 |
C22 |
C21 |
C26 |
177.9 |
180.2 |
| C21 |
C22 |
H22 |
C23 |
180.0 |
180.1 |
| H22 |
C22 |
C23 |
C24 |
181.0 |
180.1 |
| H22 |
C22 |
C23 |
H23 |
1.0 |
0.1 |
| C22 |
C23 |
H23 |
C24 |
180.0 |
180.0 |
| H23 |
C23 |
C22 |
H22 |
1.0 |
0.1 |
| H23 |
C23 |
C24 |
C25 |
180.9 |
180.0 |
| H23 |
C23 |
C24 |
O30 |
0.7 |
360.0 |
| C21 |
C26 |
H26 |
C25 |
180.0 |
179.7 |
| H26 |
C26 |
C25 |
O31 |
358.3 |
0.0 |
| O30 |
C32 |
H32 |
H32A |
120.0 |
119.9 |
| O30 |
C32 |
H32 |
H32B |
240.0 |
240.0 |
| H32A |
C32 |
H32 |
H32B |
120.0 |
120.0 |
| O30 |
C32 |
H32A |
H32 |
240.0 |
240.1 |
| O30 |
C32 |
H32A |
H32B |
120.0 |
120.0 |
| H32 |
C32 |
H32A |
H32B |
240.0 |
239.9 |
| O30 |
C32 |
H32B |
H32 |
120.0 |
120.0 |
| O30 |
C32 |
H32B |
H32A |
240.0 |
240.0 |
| H32 |
C32 |
H32B |
H32A |
120.0 |
120.0 |
| O31 |
C36 |
H36 |
H36A |
120.0 |
120.0 |
| O31 |
C36 |
H36 |
H36B |
240.0 |
240.0 |
| H36A |
C36 |
H36 |
H36B |
120.0 |
120.0 |
| O31 |
C36 |
H36A |
H36 |
240.0 |
240.0 |
| O31 |
C36 |
H36A |
H36B |
120.0 |
120.1 |
| H36 |
C36 |
H36A |
H36B |
240.0 |
240.0 |
| O31 |
C36 |
H36B |
H36 |
120.0 |
120.0 |
| O31 |
C36 |
H36B |
H36A |
240.0 |
239.9 |
| H36 |
C36 |
H36B |
H36A |
120.0 |
119.9 |