PDB Chemical Component KRP
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for KRP
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C1 |
C2 |
1.533 |
1.531 |
| C1 |
C4 |
1.581 |
1.530 |
| C1 |
H1 |
1.100 |
1.090 |
| C1 |
H1A |
1.100 |
1.090 |
| C2 |
H2 |
1.100 |
1.089 |
| C2 |
H2A |
1.100 |
1.090 |
| C2 |
H2B |
1.099 |
1.090 |
| N5 |
C4 |
1.577 |
1.465 |
| C4 |
H4 |
1.100 |
1.090 |
| C4 |
H4A |
1.100 |
1.090 |
| C25 |
N5 |
1.374 |
1.343 |
| N5 |
C6 |
1.476 |
1.378 |
| C18 |
C6 |
1.426 |
1.361 |
| C6 |
C7 |
1.563 |
1.481 |
| C7 |
O8 |
1.217 |
1.215 |
| C7 |
C9 |
1.553 |
1.476 |
| C17 |
C9 |
1.479 |
1.399 |
| C9 |
C10 |
1.460 |
1.395 |
| C10 |
C11 |
1.458 |
1.393 |
| C10 |
H10 |
1.080 |
1.080 |
| C14 |
C11 |
1.441 |
1.398 |
| C11 |
C12 |
1.401 |
1.432 |
| C12 |
N13 |
1.151 |
1.136 |
| C15 |
C14 |
1.434 |
1.382 |
| C14 |
H14 |
1.080 |
1.079 |
| C17 |
C15 |
1.450 |
1.381 |
| C16 |
C15 |
1.526 |
1.507 |
| C16 |
H16 |
1.100 |
1.090 |
| C16 |
H16A |
1.101 |
1.090 |
| C16 |
H16B |
1.101 |
1.090 |
| C17 |
H17 |
1.080 |
1.079 |
| C22 |
C18 |
1.571 |
1.467 |
| C18 |
C19 |
1.576 |
1.507 |
| C21 |
C19 |
1.566 |
1.529 |
| C20 |
C19 |
1.575 |
1.531 |
| C19 |
H19 |
1.100 |
1.091 |
| C20 |
H20 |
1.100 |
1.090 |
| C20 |
H20A |
1.099 |
1.089 |
| C20 |
H20B |
1.100 |
1.090 |
| C21 |
H21 |
1.100 |
1.090 |
| C21 |
H21A |
1.100 |
1.090 |
| C21 |
H21B |
1.100 |
1.090 |
| O23 |
C22 |
1.212 |
1.217 |
| N24 |
C22 |
1.348 |
1.349 |
| N24 |
C25 |
1.365 |
1.345 |
| N24 |
HN24 |
1.000 |
0.971 |
| O26 |
C25 |
1.261 |
1.216 |
Bond Angles for KRP
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
C1 |
C4 |
113.3 |
109.5 |
| C2 |
C1 |
H1 |
108.2 |
109.4 |
| C2 |
C1 |
H1A |
108.2 |
109.5 |
| C1 |
C2 |
H2 |
109.5 |
109.5 |
| C1 |
C2 |
H2A |
109.5 |
109.5 |
| C1 |
C2 |
H2B |
109.5 |
109.5 |
| C4 |
C1 |
H1 |
108.2 |
109.5 |
| C4 |
C1 |
H1A |
108.2 |
109.5 |
| C1 |
C4 |
H4 |
107.9 |
109.4 |
| C1 |
C4 |
H4A |
107.9 |
109.5 |
| H1 |
C1 |
H1A |
110.7 |
109.5 |
| H2 |
C2 |
H2A |
109.5 |
109.5 |
| H2 |
C2 |
H2B |
109.5 |
109.4 |
| H2A |
C2 |
H2B |
109.5 |
109.5 |
| N5 |
C4 |
H4 |
107.9 |
109.5 |
| N5 |
C4 |
H4A |
107.9 |
109.5 |
| H4 |
C4 |
H4A |
111.0 |
109.5 |
| N5 |
C6 |
C7 |
113.9 |
120.3 |
| C6 |
C7 |
O8 |
116.5 |
120.0 |
| C6 |
C7 |
C9 |
124.2 |
120.0 |
| O8 |
C7 |
C9 |
119.3 |
120.0 |
| C7 |
C9 |
C10 |
119.7 |
120.1 |
| C9 |
C10 |
C11 |
119.3 |
119.7 |
| C9 |
C10 |
H10 |
120.3 |
120.2 |
| C11 |
C10 |
H10 |
120.3 |
120.1 |
| C10 |
C11 |
C12 |
120.7 |
120.1 |
| C11 |
C12 |
N13 |
177.1 |
180.0 |
| C15 |
C14 |
H14 |
119.8 |
119.9 |
| H16 |
C16 |
H16A |
109.4 |
109.4 |
| H16 |
C16 |
H16B |
109.5 |
109.5 |
| H16A |
C16 |
H16B |
109.5 |
109.5 |
| C18 |
C19 |
H19 |
107.3 |
109.4 |
| C21 |
C19 |
H19 |
110.1 |
109.5 |
| C20 |
C19 |
H19 |
108.3 |
109.4 |
| H20 |
C20 |
H20A |
109.5 |
109.5 |
| H20 |
C20 |
H20B |
109.5 |
109.5 |
| H20A |
C20 |
H20B |
109.5 |
109.5 |
| H21 |
C21 |
H21A |
109.5 |
109.5 |
| H21 |
C21 |
H21B |
109.5 |
109.5 |
| H21A |
C21 |
H21B |
109.4 |
109.5 |
| C25 |
N24 |
HN24 |
117.5 |
119.8 |
Torsion Angles for KRP
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C4 |
C1 |
C2 |
H1 |
240.0 |
240.0 |
| C4 |
C1 |
C2 |
H1A |
120.0 |
120.1 |
| C2 |
C1 |
C4 |
H4 |
205.2 |
300.0 |
| C2 |
C1 |
C4 |
H4A |
325.2 |
59.9 |
| H1 |
C1 |
C2 |
H1A |
240.0 |
240.0 |
| H2 |
C2 |
C1 |
H2A |
240.0 |
239.9 |
| H2 |
C2 |
C1 |
H2B |
120.0 |
120.0 |
| H2A |
C2 |
C1 |
H2B |
240.0 |
240.0 |
| C2 |
C1 |
C4 |
H1 |
120.0 |
119.9 |
| C2 |
C1 |
C4 |
H1A |
240.0 |
239.9 |
| C4 |
C1 |
C2 |
H2 |
180.0 |
180.0 |
| C4 |
C1 |
C2 |
H2A |
300.0 |
300.1 |
| C4 |
C1 |
C2 |
H2B |
60.0 |
60.1 |
| H1 |
C1 |
C4 |
H1A |
120.0 |
120.0 |
| N5 |
C4 |
C1 |
H4 |
240.0 |
240.0 |
| N5 |
C4 |
C1 |
H4A |
120.0 |
120.1 |
| H4 |
C4 |
C1 |
H4A |
240.0 |
240.0 |
| C2 |
C1 |
H1 |
C4 |
236.9 |
240.0 |
| C2 |
C1 |
H1 |
H1A |
118.5 |
120.0 |
| H1 |
C1 |
C2 |
H2 |
300.0 |
300.0 |
| H1 |
C1 |
C2 |
H2A |
60.0 |
60.0 |
| H1 |
C1 |
C2 |
H2B |
180.0 |
180.0 |
| C4 |
C1 |
H1 |
H1A |
241.6 |
239.9 |
| H1 |
C1 |
C4 |
H4 |
85.2 |
180.0 |
| H1 |
C1 |
C4 |
H4A |
205.1 |
300.0 |
| C2 |
C1 |
H1A |
C4 |
123.1 |
120.0 |
| C2 |
C1 |
H1A |
H1 |
241.5 |
240.1 |
| H1A |
C1 |
C2 |
H2 |
60.0 |
59.9 |
| H1A |
C1 |
C2 |
H2A |
180.0 |
180.0 |
| H1A |
C1 |
C2 |
H2B |
300.0 |
300.0 |
| C4 |
C1 |
H1A |
H1 |
118.4 |
120.0 |
| H1A |
C1 |
C4 |
H4 |
325.2 |
60.0 |
| H1A |
C1 |
C4 |
H4A |
85.1 |
180.0 |
| H2 |
C2 |
C1 |
C4 |
180.0 |
180.0 |
| H2 |
C2 |
C1 |
H1 |
300.0 |
300.0 |
| H2 |
C2 |
C1 |
H1A |
60.0 |
59.9 |
| C1 |
C2 |
H2 |
H2A |
120.0 |
120.0 |
| C1 |
C2 |
H2 |
H2B |
240.0 |
240.0 |
| H2A |
C2 |
H2 |
H2B |
120.0 |
120.0 |
| H2A |
C2 |
C1 |
C4 |
300.0 |
300.1 |
| H2A |
C2 |
C1 |
H1 |
60.0 |
60.0 |
| H2A |
C2 |
C1 |
H1A |
180.0 |
180.0 |
| C1 |
C2 |
H2A |
H2 |
240.0 |
240.0 |
| C1 |
C2 |
H2A |
H2B |
120.0 |
120.0 |
| H2 |
C2 |
H2A |
H2B |
240.0 |
240.0 |
| H2B |
C2 |
C1 |
C4 |
60.0 |
60.1 |
| H2B |
C2 |
C1 |
H1 |
180.0 |
180.0 |
| H2B |
C2 |
C1 |
H1A |
300.0 |
300.0 |
| C1 |
C2 |
H2B |
H2 |
120.0 |
120.0 |
| C1 |
C2 |
H2B |
H2A |
240.0 |
240.0 |
| H2 |
C2 |
H2B |
H2A |
120.0 |
120.0 |
| N5 |
C4 |
C1 |
H1 |
325.2 |
60.1 |
| N5 |
C4 |
C1 |
H1A |
205.1 |
300.1 |
| C1 |
C4 |
N5 |
H4 |
120.0 |
119.9 |
| C1 |
C4 |
N5 |
H4A |
240.0 |
239.9 |
| H4 |
C4 |
N5 |
H4A |
120.0 |
120.0 |
| H4 |
C4 |
C1 |
H1 |
85.2 |
180.0 |
| H4 |
C4 |
C1 |
H1A |
325.2 |
60.0 |
| C1 |
C4 |
H4 |
H4A |
118.0 |
120.0 |
| N5 |
C4 |
H4 |
H4A |
242.0 |
240.0 |
| H4A |
C4 |
C1 |
H1 |
205.1 |
300.0 |
| H4A |
C4 |
C1 |
H1A |
85.1 |
180.0 |
| C1 |
C4 |
H4A |
H4 |
242.0 |
240.0 |
| N5 |
C4 |
H4A |
H4 |
118.0 |
120.0 |
| C25 |
N5 |
C4 |
H4 |
308.4 |
157.2 |
| C25 |
N5 |
C4 |
H4A |
188.4 |
37.3 |
| C6 |
N5 |
C4 |
H4 |
126.6 |
337.5 |
| C6 |
N5 |
C4 |
H4A |
6.6 |
217.5 |
| N5 |
C6 |
C7 |
O8 |
70.5 |
289.6 |
| N5 |
C6 |
C7 |
C9 |
251.8 |
109.7 |
| O8 |
C7 |
C6 |
C9 |
178.7 |
180.0 |
| C6 |
C7 |
C9 |
C10 |
177.8 |
352.9 |
| C6 |
C7 |
O8 |
C9 |
181.3 |
180.0 |
| O8 |
C7 |
C9 |
C10 |
359.2 |
172.9 |
| C6 |
C7 |
C9 |
O8 |
178.6 |
180.0 |
| C7 |
C9 |
C10 |
C11 |
180.8 |
180.0 |
| C7 |
C9 |
C10 |
H10 |
0.8 |
360.0 |
| C17 |
C9 |
C10 |
H10 |
180.3 |
180.2 |
| C11 |
C10 |
C9 |
H10 |
180.0 |
180.0 |
| C9 |
C10 |
C11 |
C12 |
178.8 |
180.0 |
| C9 |
C10 |
C11 |
H10 |
180.0 |
180.0 |
| C10 |
C11 |
C12 |
N13 |
268.0 |
269.1 |
| C9 |
C10 |
H10 |
C11 |
180.0 |
180.0 |
| H10 |
C10 |
C11 |
C12 |
358.8 |
0.0 |
| C14 |
C11 |
C10 |
H10 |
179.5 |
180.1 |
| C12 |
C11 |
C10 |
H10 |
358.8 |
0.0 |
| C17 |
C15 |
C14 |
H14 |
180.4 |
179.7 |
| C16 |
C15 |
C14 |
H14 |
0.1 |
360.0 |
| H16A |
C16 |
H16 |
H16B |
120.0 |
120.0 |
| H16 |
C16 |
H16A |
H16B |
240.0 |
240.0 |
| H16 |
C16 |
H16B |
H16A |
120.0 |
120.0 |
| C22 |
C18 |
C19 |
H19 |
177.6 |
184.5 |
| C21 |
C19 |
C18 |
H19 |
119.8 |
240.0 |
| C20 |
C19 |
C18 |
H19 |
241.4 |
119.9 |
| C18 |
C19 |
C21 |
H19 |
241.9 |
120.0 |
| C20 |
C19 |
C21 |
H19 |
118.7 |
240.0 |
| C18 |
C19 |
C20 |
H19 |
118.0 |
240.1 |
| C21 |
C19 |
C20 |
H19 |
240.2 |
120.0 |
| H20 |
C20 |
C19 |
H19 |
61.9 |
186.8 |
| H20A |
C20 |
H20 |
H20B |
120.0 |
120.1 |
| H20A |
C20 |
C19 |
H19 |
182.0 |
306.8 |
| H20 |
C20 |
H20A |
H20B |
240.0 |
239.9 |
| H20B |
C20 |
C19 |
H19 |
302.0 |
66.8 |
| H20 |
C20 |
H20B |
H20A |
120.0 |
120.0 |
| H21 |
C21 |
C19 |
H19 |
298.1 |
303.3 |
| H21A |
C21 |
H21 |
H21B |
120.0 |
120.0 |
| H21A |
C21 |
C19 |
H19 |
58.2 |
63.3 |
| H21 |
C21 |
H21A |
H21B |
240.0 |
240.0 |
| H21B |
C21 |
C19 |
H19 |
178.1 |
183.3 |
| H21 |
C21 |
H21B |
H21A |
120.0 |
120.1 |
| O26 |
C25 |
N24 |
HN24 |
0.1 |
359.7 |