Atom Nomenclature for KRC

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for KRC

Atom Name (V3) Atom Name (V2)
C1 C1
C2 C2
C3 C3
C4 C4
C5 C5
C6 C6
O7 O7
C8 C8
C9 C9
C10 C10
C11 C11
C12 C12
C13 C13
O14 O14
O15 O15
O16 O16
C17 C17
N18 N18
C19 C19
O20 O20
C21 C21
O22 O22
C23 C23
O24 O24
C25 C25
C26 C26
C27 C27
C28 C28
C29 C29
C30 C30
C31 C31
C32 C32
C33 C33
C34 C34
C35 C35
C36 C36
C37 C37
C38 C38
H3 H3
H12 H12
HO15 HO15
HN18 HN18
H19 H19
H19A H19A
H19B H19B
HO22 HO22
H23 H23
H23A H23A
H23B H23B
H25 H25
H25A H25A
H25B H25B
H26 H26
H26A H26A
H29 H29
H30 H30
H33 H33
H34 H34
H35 H35
H36 H36
H37 H37
H37A H37A
H38 H38
H38A H38A
H38B H38B