PDB Chemical Component KPY
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for KPY
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| NZ |
CE |
1.460 |
1.464 |
| NZ |
CI |
1.359 |
1.281 |
| CE |
CD |
1.516 |
1.530 |
| CD |
SG |
1.830 |
1.813 |
| CB |
SG |
1.849 |
1.815 |
| CB |
CA |
1.533 |
1.530 |
| CA |
C |
1.568 |
1.507 |
| CA |
N |
1.468 |
1.469 |
| C |
O |
1.251 |
1.208 |
| C |
OXT |
1.329 |
1.343 |
| OL1 |
CL |
1.236 |
1.346 |
| CL |
OL2 |
1.229 |
1.214 |
| CL |
CI |
1.555 |
1.483 |
| CI |
CK |
1.555 |
1.507 |
| CE |
HE1C |
1.100 |
1.090 |
| CE |
HE2C |
1.099 |
1.090 |
| CD |
HD1C |
1.100 |
1.090 |
| CD |
HD2C |
1.100 |
1.090 |
| CB |
HB1C |
1.100 |
1.089 |
| CB |
HB2C |
1.100 |
1.090 |
| CA |
HA |
1.100 |
1.089 |
| N |
H |
1.000 |
1.009 |
| N |
H2 |
1.000 |
1.008 |
| OXT |
HXT |
0.950 |
0.967 |
| OL1 |
HL1 |
0.950 |
0.967 |
| CK |
HK1C |
1.100 |
1.090 |
| CK |
HK2C |
1.100 |
1.090 |
| CK |
HK3C |
1.100 |
1.090 |
Bond Angles for KPY
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CE |
NZ |
CI |
121.7 |
120.0 |
| NZ |
CE |
CD |
110.4 |
109.5 |
| NZ |
CE |
HE1C |
109.2 |
109.4 |
| NZ |
CE |
HE2C |
109.2 |
109.5 |
| NZ |
CI |
CL |
112.6 |
120.0 |
| NZ |
CI |
CK |
117.0 |
120.0 |
| CE |
CD |
SG |
108.8 |
109.5 |
| CD |
CE |
HE1C |
109.2 |
109.4 |
| CD |
CE |
HE2C |
109.2 |
109.5 |
| CE |
CD |
HD1C |
109.6 |
109.4 |
| CE |
CD |
HD2C |
109.6 |
109.5 |
| SG |
CD |
HD1C |
109.7 |
109.5 |
| SG |
CD |
HD2C |
109.7 |
109.5 |
| CB |
CA |
C |
114.3 |
109.5 |
| CB |
CA |
N |
114.9 |
109.5 |
| CA |
CB |
HB1C |
108.7 |
109.5 |
| CA |
CB |
HB2C |
108.7 |
109.4 |
| CB |
CA |
HA |
107.0 |
109.5 |
| C |
CA |
N |
105.6 |
109.5 |
| CA |
C |
O |
122.0 |
120.0 |
| CA |
C |
OXT |
114.6 |
120.0 |
| C |
CA |
HA |
106.7 |
109.5 |
| N |
CA |
HA |
107.8 |
109.5 |
| CA |
N |
H |
109.5 |
111.0 |
| CA |
N |
H2 |
109.5 |
111.1 |
| O |
C |
OXT |
123.4 |
120.0 |
| C |
OXT |
HXT |
109.5 |
117.0 |
| OL1 |
CL |
OL2 |
117.6 |
120.0 |
| OL1 |
CL |
CI |
118.3 |
120.0 |
| CL |
OL1 |
HL1 |
109.5 |
117.1 |
| OL2 |
CL |
CI |
123.9 |
120.0 |
| CL |
CI |
CK |
118.3 |
120.0 |
| CI |
CK |
HK1C |
109.5 |
109.5 |
| CI |
CK |
HK2C |
109.4 |
109.5 |
| CI |
CK |
HK3C |
109.5 |
109.5 |
| HE1C |
CE |
HE2C |
109.5 |
109.4 |
| HD1C |
CD |
HD2C |
109.5 |
109.4 |
| HB1C |
CB |
HB2C |
109.5 |
109.5 |
| H |
N |
H2 |
109.5 |
111.0 |
| HK1C |
CK |
HK2C |
109.5 |
109.5 |
| HK1C |
CK |
HK3C |
109.5 |
109.4 |
| HK2C |
CK |
HK3C |
109.4 |
109.5 |
Torsion Angles for KPY
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CE |
NZ |
CI |
CL |
163.6 |
173.7 |
| CE |
NZ |
CI |
CK |
305.6 |
353.7 |
| NZ |
CE |
CD |
SG |
197.7 |
180.0 |
| CD |
CE |
NZ |
HE1C |
239.9 |
240.0 |
| CD |
CE |
NZ |
HE2C |
120.2 |
120.1 |
| NZ |
CE |
CD |
HD1C |
317.7 |
300.0 |
| NZ |
CE |
CD |
HD2C |
77.8 |
59.9 |
| HE1C |
CE |
NZ |
HE2C |
240.3 |
240.0 |
| CI |
NZ |
CE |
CD |
205.6 |
114.7 |
| CI |
NZ |
CE |
HE1C |
325.7 |
234.7 |
| CI |
NZ |
CE |
HE2C |
85.4 |
354.6 |
| OL1 |
CL |
CI |
NZ |
0.1 |
0.0 |
| OL2 |
CL |
CI |
NZ |
174.5 |
180.0 |
| CL |
CI |
NZ |
CK |
218.0 |
180.0 |
| NZ |
CI |
CK |
HK1C |
180.0 |
85.1 |
| NZ |
CI |
CK |
HK2C |
300.0 |
205.1 |
| NZ |
CI |
CK |
HK3C |
60.0 |
325.2 |
| CD |
CE |
NZ |
CI |
205.6 |
114.7 |
| NZ |
CE |
CD |
HE1C |
120.1 |
120.0 |
| NZ |
CE |
CD |
HE2C |
239.8 |
239.9 |
| SG |
CD |
CE |
HD1C |
240.1 |
240.0 |
| SG |
CD |
CE |
HD2C |
119.9 |
120.1 |
| HE1C |
CE |
CD |
HE2C |
119.7 |
119.9 |
| HD1C |
CD |
CE |
HD2C |
239.8 |
240.0 |
| SG |
CD |
CE |
HE1C |
77.6 |
60.0 |
| SG |
CD |
CE |
HE2C |
317.9 |
300.1 |
| CE |
CD |
SG |
HD1C |
119.9 |
120.0 |
| CE |
CD |
SG |
HD2C |
240.1 |
239.9 |
| HD1C |
CD |
SG |
HD2C |
120.2 |
120.0 |
| CB |
SG |
CD |
HD1C |
67.2 |
60.0 |
| CB |
SG |
CD |
HD2C |
307.0 |
300.0 |
| C |
CA |
CB |
N |
237.6 |
240.0 |
| CB |
CA |
C |
O |
58.8 |
100.0 |
| CB |
CA |
C |
OXT |
236.5 |
280.0 |
| C |
CA |
CB |
HA |
117.9 |
120.0 |
| N |
CA |
CB |
HA |
240.3 |
240.0 |
| CB |
CA |
N |
H |
180.0 |
300.0 |
| CB |
CA |
N |
H2 |
300.0 |
64.0 |
| HB1C |
CB |
CA |
HB2C |
119.1 |
120.0 |
| CB |
CA |
C |
N |
127.3 |
120.0 |
| C |
CA |
CB |
HB1C |
297.5 |
60.0 |
| C |
CA |
CB |
HB2C |
178.4 |
300.0 |
| CB |
CA |
C |
HA |
241.9 |
240.0 |
| N |
CA |
C |
HA |
114.6 |
120.0 |
| C |
CA |
N |
H |
306.9 |
60.0 |
| C |
CA |
N |
H2 |
66.9 |
183.9 |
| O |
C |
CA |
OXT |
182.3 |
180.0 |
| CA |
C |
OXT |
HXT |
182.3 |
180.0 |
| CB |
CA |
N |
C |
233.0 |
240.0 |
| N |
CA |
CB |
HB1C |
59.9 |
180.0 |
| N |
CA |
CB |
HB2C |
300.8 |
60.0 |
| CB |
CA |
N |
HA |
119.3 |
120.0 |
| N |
CA |
C |
O |
291.5 |
340.0 |
| N |
CA |
C |
OXT |
109.2 |
160.0 |
| C |
CA |
N |
HA |
246.2 |
240.0 |
| H |
N |
CA |
H2 |
240.0 |
236.0 |
| O |
C |
CA |
N |
291.5 |
340.0 |
| CA |
C |
O |
OXT |
177.5 |
180.0 |
| O |
C |
CA |
HA |
176.9 |
220.0 |
| O |
C |
OXT |
HXT |
360.0 |
360.0 |
| OXT |
C |
CA |
N |
109.2 |
160.0 |
| CA |
C |
OXT |
O |
182.3 |
180.0 |
| OXT |
C |
CA |
HA |
354.6 |
40.0 |
| NZ |
CI |
CL |
OL1 |
0.1 |
0.0 |
| OL2 |
CL |
OL1 |
CI |
185.2 |
180.0 |
| OL1 |
CL |
CI |
CK |
218.6 |
180.0 |
| NZ |
CI |
CL |
OL2 |
174.5 |
180.0 |
| OL1 |
CL |
OL2 |
CI |
174.5 |
180.0 |
| OL2 |
CL |
OL1 |
HL1 |
0.0 |
360.0 |
| OL2 |
CL |
CI |
CK |
33.0 |
360.0 |
| NZ |
CI |
CL |
CK |
141.5 |
180.0 |
| OL1 |
CL |
CI |
OL2 |
185.6 |
180.0 |
| CI |
CL |
OL1 |
HL1 |
174.8 |
180.0 |
| CL |
CI |
CK |
HK1C |
319.8 |
265.1 |
| CL |
CI |
CK |
HK2C |
79.8 |
25.1 |
| CL |
CI |
CK |
HK3C |
199.8 |
145.2 |
| NZ |
CI |
CK |
CL |
220.2 |
180.0 |
| HK1C |
CK |
CI |
HK2C |
240.0 |
240.0 |
| HK1C |
CK |
CI |
HK3C |
120.1 |
119.9 |
| HK2C |
CK |
CI |
HK3C |
240.1 |
239.9 |
| HE1C |
CE |
NZ |
CI |
325.7 |
234.7 |
| NZ |
CE |
HE1C |
CD |
239.1 |
240.0 |
| NZ |
CE |
HE1C |
HE2C |
119.6 |
120.1 |
| HE1C |
CE |
CD |
SG |
77.6 |
60.0 |
| CD |
CE |
HE1C |
HE2C |
240.5 |
240.1 |
| HE1C |
CE |
CD |
HD1C |
197.5 |
180.0 |
| HE1C |
CE |
CD |
HD2C |
317.7 |
300.0 |
| HE2C |
CE |
NZ |
CI |
85.4 |
354.6 |
| NZ |
CE |
HE2C |
CD |
120.9 |
120.1 |
| NZ |
CE |
HE2C |
HE1C |
240.4 |
240.0 |
| HE2C |
CE |
CD |
SG |
317.9 |
300.1 |
| CD |
CE |
HE2C |
HE1C |
119.5 |
119.9 |
| HE2C |
CE |
CD |
HD1C |
77.8 |
60.1 |
| HE2C |
CE |
CD |
HD2C |
198.0 |
180.0 |
| CE |
CD |
HD1C |
SG |
240.6 |
240.0 |
| HD1C |
CD |
CE |
HE1C |
197.5 |
180.0 |
| HD1C |
CD |
CE |
HE2C |
77.8 |
60.1 |
| CE |
CD |
HD1C |
HD2C |
120.2 |
120.0 |
| SG |
CD |
HD1C |
HD2C |
239.7 |
240.0 |
| CE |
CD |
HD2C |
SG |
119.4 |
120.0 |
| HD2C |
CD |
CE |
HE1C |
317.7 |
300.0 |
| HD2C |
CD |
CE |
HE2C |
198.0 |
180.0 |
| CE |
CD |
HD2C |
HD1C |
239.7 |
240.0 |
| SG |
CD |
HD2C |
HD1C |
120.3 |
120.0 |
| HB1C |
CB |
CA |
C |
297.5 |
60.0 |
| HB1C |
CB |
CA |
N |
59.9 |
180.0 |
| CA |
CB |
HB1C |
HB2C |
241.4 |
240.0 |
| HB1C |
CB |
CA |
HA |
179.6 |
300.0 |
| HB2C |
CB |
CA |
C |
178.4 |
300.0 |
| HB2C |
CB |
CA |
N |
300.8 |
60.0 |
| CA |
CB |
HB2C |
HB1C |
118.6 |
120.0 |
| HB2C |
CB |
CA |
HA |
60.5 |
179.9 |
| CB |
CA |
HA |
C |
122.8 |
120.0 |
| CB |
CA |
HA |
N |
235.8 |
240.0 |
| HA |
CA |
CB |
HB1C |
179.6 |
300.0 |
| HA |
CA |
CB |
HB2C |
60.5 |
179.9 |
| C |
CA |
HA |
N |
113.0 |
120.0 |
| HA |
CA |
C |
O |
176.9 |
220.0 |
| HA |
CA |
C |
OXT |
354.6 |
40.0 |
| HA |
CA |
N |
H |
60.7 |
180.0 |
| HA |
CA |
N |
H2 |
180.7 |
304.0 |
| H |
N |
CA |
HA |
60.7 |
180.0 |
| CA |
N |
H |
H2 |
120.0 |
124.0 |
| H2 |
N |
CA |
HA |
180.7 |
304.0 |
| CA |
N |
H2 |
H |
240.0 |
236.0 |
| HL1 |
OL1 |
CL |
OL2 |
0.0 |
360.0 |
| HL1 |
OL1 |
CL |
CI |
174.8 |
180.0 |
| CI |
CK |
HK1C |
HK2C |
120.0 |
120.0 |
| CI |
CK |
HK1C |
HK3C |
240.0 |
240.0 |
| HK2C |
CK |
HK1C |
HK3C |
120.0 |
120.0 |
| CI |
CK |
HK2C |
HK1C |
240.0 |
240.0 |
| CI |
CK |
HK2C |
HK3C |
120.0 |
120.1 |
| HK1C |
CK |
HK2C |
HK3C |
240.0 |
240.1 |
| CI |
CK |
HK3C |
HK1C |
120.1 |
120.0 |
| CI |
CK |
HK3C |
HK2C |
240.1 |
239.9 |
| HK1C |
CK |
HK3C |
HK2C |
120.0 |
120.0 |