PDB Chemical Component KNJ

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for KNJ

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C6 C7 1.502 1.507
C7 C5 1.396 1.381
C7 C8 1.409 1.387
C5 C4 1.392 1.389
C4 N1 1.356 1.400
C4 C3 1.379 1.388
C2 C3 1.401 1.382
C2 C1 1.497 1.507
C2 C8 1.374 1.387
C8 O1 1.372 1.359
O1 C9 1.414 1.429
C9 C10 1.535 1.507
C10 O6 1.242 1.212
C10 N3 1.331 1.347
N3 C11 1.445 1.465
C11 C12 1.528 1.530
C11 C19 1.551 1.530
C12 C13 1.496 1.506
C13 C14 1.416 1.383
C13 C18 1.389 1.382
C14 C15 1.386 1.383
C15 C16 1.366 1.383
C16 C17 1.350 1.382
C17 C18 1.414 1.383
C19 O2 1.393 1.429
C19 C20 1.517 1.507
C20 O4 1.240 1.212
C20 N4 1.336 1.348
N4 C25 1.476 1.476
N4 C21 1.468 1.455
C25 S2 1.788 1.841
S2 C22 1.813 1.842
C22 C24 1.538 1.531
C22 C23 1.511 1.530
C22 C21 1.552 1.545
C21 C26 1.526 1.507
C26 O5 1.231 1.214
C26 N5 1.330 1.348
N5 C27 1.472 1.465
C27 C28 1.514 1.508
C28 C30 1.489 1.507
C28 C29 1.359 1.310
C6 H6 1.100 1.090
C6 H6A 1.100 1.090
C6 H6B 1.100 1.091
C5 H5 1.080 1.080
N1 HN1 1.000 0.970
N1 HN1A 1.000 0.970
C3 H3 1.080 1.081
C1 H1 1.100 1.090
C1 H1A 1.100 1.091
C1 H1B 1.100 1.090
C9 H9 1.100 1.090
C9 H9A 1.100 1.090
N3 HN3 1.000 0.970
C11 H11 1.100 1.090
C12 H12 1.101 1.090
C12 H12A 1.100 1.090
C14 H14 1.080 1.080
C15 H15 1.080 1.080
C16 H16 1.080 1.079
C17 H17 1.080 1.079
C18 H18 1.080 1.079
C19 H19 1.100 1.089
O2 HO2 0.950 0.967
C25 H25 1.100 1.090
C25 H25A 1.100 1.089
C24 H24 1.100 1.089
C24 H24A 1.100 1.090
C24 H24B 1.100 1.090
C23 H23 1.100 1.090
C23 H23A 1.100 1.091
C23 H23B 1.100 1.090
C21 H21 1.100 1.089
N5 HN5 1.000 0.970
C27 H27 1.100 1.090
C27 H27A 1.100 1.089
C30 H30 1.099 1.090
C30 H30A 1.100 1.090
C30 H30B 1.100 1.089
C29 H29 1.080 1.080
C29 H29A 1.080 1.080

Bond Angles for KNJ

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C6 C7 C8 122.7 120.0
C5 C7 C8 117.8 120.0
C7 C5 H5 118.4 120.0
C2 C8 C7 120.8 120.0
C7 C8 O1 117.4 120.0
C4 N1 HN1 109.5 120.0
C4 N1 HN1A 109.5 120.0
C4 C3 H3 118.4 120.1
C3 C2 C8 118.6 120.0
C2 C3 H3 118.3 120.0
C2 C1 H1 109.5 109.5
C2 C1 H1A 109.5 109.4
C2 C1 H1B 109.5 109.5
C2 C8 O1 121.8 120.0
C8 O1 C9 111.8 117.0
O1 C9 C10 109.3 109.5
O1 C9 H9 109.5 109.4
O1 C9 H9A 109.5 109.4
C9 C10 O6 117.4 120.0
C9 C10 N3 118.8 120.0
C10 C9 H9 109.5 109.5
C10 C9 H9A 109.6 109.5
O6 C10 N3 123.8 120.0
C10 N3 C11 122.0 120.0
C10 N3 HN3 119.0 120.1
N3 C11 C12 110.9 109.5
N3 C11 C19 110.2 109.5
C11 N3 HN3 119.0 120.0
N3 C11 H11 108.9 109.5
C11 C12 H12 108.7 109.5
C11 C12 H12A 108.7 109.4
C11 C19 O2 109.0 109.5
C11 C19 H19 110.4 109.5
C12 C13 C14 121.4 120.0
C12 C13 C18 119.6 120.0
C14 C13 C18 118.9 120.0
C13 C14 C15 119.8 120.0
C13 C14 H14 120.1 120.0
C13 C18 H18 120.6 120.0
C15 C14 H14 120.1 120.0
C14 C15 H15 119.7 120.0
C15 C16 C17 120.2 120.0
C15 C16 H16 119.9 120.0
C16 C17 C18 121.6 120.0
C17 C16 H16 119.9 120.1
C16 C17 H17 119.2 120.0
C17 C18 H18 120.7 120.0
O2 C19 H19 108.3 109.4
C19 O2 HO2 109.5 114.0
C19 C20 N4 118.2 120.0
O4 C20 N4 120.7 120.0
C20 N4 C25 124.6 122.4
C20 N4 C21 119.7 122.4
C21 N4 C25 115.7 115.1
N4 C25 S2 106.0 102.6
N4 C25 H25 110.6 110.8
N4 C25 H25A 110.7 110.8
N4 C21 H21 114.5 108.8
S2 C25 H25 110.7 110.7
S2 C25 H25A 110.6 110.8
C23 C22 C24 110.9 110.9
C22 C24 H24 109.5 109.5
C22 C24 H24A 109.5 109.5
C22 C24 H24B 109.5 109.4
C22 C23 H23 109.5 109.5
C22 C23 H23A 109.5 109.5
C22 C23 H23B 109.5 109.5
C22 C21 H21 108.3 108.6
C21 C26 N5 114.9 120.0
O5 C26 N5 123.3 120.0
C26 N5 C27 122.8 120.0
C26 N5 HN5 118.7 119.9
N5 C27 C28 110.1 109.4
C27 N5 HN5 118.6 120.1
N5 C27 H27 109.2 109.4
N5 C27 H27A 109.3 109.5
C27 C28 C30 116.8 120.0
C27 C28 C29 119.1 120.0
C28 C27 H27 109.3 109.4
C28 C27 H27A 109.2 109.5
C30 C28 C29 124.1 120.0
C28 C30 H30 109.5 109.4
C28 C30 H30A 109.4 109.5
C28 C30 H30B 109.4 109.5
C28 C29 H29 120.0 120.0
C28 C29 H29A 120.0 120.0
H6 C6 H6A 109.4 109.6
H6 C6 H6B 109.5 109.5
H6A C6 H6B 109.5 109.5
HN1 N1 HN1A 109.5 120.0
H1 C1 H1A 109.5 109.5
H1 C1 H1B 109.4 109.5
H1A C1 H1B 109.5 109.5
H9 C9 H9A 109.4 109.4
H12 C12 H12A 110.2 109.4
H25 C25 H25A 108.3 110.8
H24 C24 H24A 109.5 109.5
H24 C24 H24B 109.4 109.5
H24A C24 H24B 109.5 109.5
H23 C23 H23A 109.5 109.5
H23 C23 H23B 109.4 109.5
H23A C23 H23B 109.5 109.5
H27 C27 H27A 109.7 109.6
H30 C30 H30A 109.4 109.4
H30 C30 H30B 109.5 109.5
H30A C30 H30B 109.5 109.5
H29 C29 H29A 120.0 120.0

Torsion Angles for KNJ

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C5 C7 C6 C8 178.9 180.2
C6 C7 C5 H5 0.5 0.0
C2 C8 C7 C6 179.8 179.7
C6 C7 C8 O1 359.1 360.0
C6 C7 C5 C8 181.1 179.8
C2 C8 C7 C5 0.9 359.5
C5 C7 C8 O1 180.2 179.8
C8 C7 C5 H5 179.4 180.2
C3 C2 C8 C7 359.4 0.5
C2 C8 C7 O1 180.7 179.8
C7 C8 O1 C9 264.6 90.0
C5 C4 N1 HN1 180.0 359.9
C5 C4 N1 HN1A 300.0 180.0
C5 C4 C3 H3 180.4 180.0
N1 C4 C3 H3 0.2 359.9
HN1 N1 C4 HN1A 240.0 179.9
C4 C3 C2 C8 359.9 359.7
C2 C3 C4 H3 180.0 180.1
C4 C3 C2 H3 180.0 179.9
C3 C2 C1 H1 89.7 90.0
C3 C2 C1 H1A 209.7 210.0
C3 C2 C1 H1B 329.8 329.9
C3 C2 C8 O1 180.1 180.3
H1 C1 C2 H1A 240.0 240.0
H1 C1 C2 H1B 120.0 120.0
H1A C1 C2 H1B 240.0 240.0
C6 C7 C8 C2 179.8 179.7
C5 C7 C8 C2 0.9 359.5
C7 C8 C2 O1 179.3 180.2
C8 C2 C3 H3 179.9 179.8
C8 C2 C1 H1 270.2 270.3
C8 C2 C1 H1A 30.2 30.3
C8 C2 C1 H1B 150.2 150.3
C2 C8 O1 C9 84.0 270.3
C2 C8 O1 C7 179.3 180.2
C8 O1 C9 C10 168.0 180.0
C8 O1 C9 H9 288.0 300.1
C8 O1 C9 H9A 47.9 59.9
O1 C9 C10 O6 164.0 0.1
O1 C9 C10 N3 344.1 180.0
C10 C9 O1 H9 240.0 239.9
C10 C9 O1 H9A 120.0 120.0
H9 C9 O1 H9A 240.0 240.1
O1 C9 C10 H9 120.0 120.0
O1 C9 C10 H9A 240.0 240.0
O6 C10 C9 N3 179.8 180.1
C9 C10 N3 C11 182.5 180.0
C9 C10 N3 HN3 2.5 0.0
H9 C9 C10 H9A 120.0 120.0
C9 C10 O6 N3 180.2 179.9
O6 C10 C9 H9 44.0 240.0
O6 C10 C9 H9A 284.0 120.0
O6 C10 N3 C11 2.7 360.0
O6 C10 N3 HN3 182.7 180.0
C9 C10 N3 O6 179.8 180.1
N3 C10 C9 H9 224.2 60.0
N3 C10 C9 H9A 104.1 300.0
C10 N3 C11 C12 126.2 85.0
C10 N3 C11 C19 251.1 205.0
C11 N3 C10 HN3 180.0 180.0
C10 N3 C11 H11 8.9 325.0
C10 N3 C11 HN3 180.0 180.0
N3 C11 C12 H12 67.6 55.0
N3 C11 C12 H12A 187.5 175.0
N3 C11 C19 O2 274.6 295.0
N3 C11 C19 H19 33.4 55.0
N3 C11 C12 C19 123.8 120.0
C12 C11 N3 HN3 306.1 265.0
N3 C11 C12 H11 241.4 240.0
C12 C11 C19 O2 38.7 55.0
C12 C11 C19 H19 157.6 175.0
C11 C12 C13 C14 284.9 90.0
C11 C12 C13 C18 102.1 269.7
H12 C12 C11 H12A 240.0 240.0
N3 C11 C19 C12 235.8 240.0
C19 C11 N3 HN3 71.0 25.0
N3 C11 C19 H11 118.6 120.0
O2 C19 C11 H19 241.2 240.0
C11 C19 O2 HO2 251.9 300.0
C11 C19 C20 N4 272.0 295.0
N3 C11 C12 C13 307.5 295.0
C14 C13 C12 C18 182.9 180.3
C12 C13 C14 C15 175.9 180.0
C12 C13 C14 H14 355.9 359.9
C12 C13 C18 H18 4.9 0.0
C12 C13 C14 C18 177.1 179.7
C14 C13 C18 H18 182.1 179.7
C15 C14 C13 H14 180.0 180.1
C13 C14 C15 H15 178.8 179.9
C12 C13 C18 C14 182.8 180.3
C18 C13 C14 C15 358.8 0.3
C18 C13 C14 H14 178.8 180.2
C16 C17 C18 C13 359.3 0.5
C17 C18 C13 H18 180.0 179.7
C15 C14 C13 C18 358.8 0.3
C13 C14 C15 H14 180.0 179.9
C14 C15 C16 C17 2.6 360.0
C14 C15 C16 H16 182.6 179.9
C13 C14 C15 C16 358.8 360.0
C15 C16 C17 C18 358.3 359.8
C17 C16 C15 H16 180.0 180.0
C15 C16 C17 H17 178.3 180.0
C15 C16 C17 H16 180.0 180.0
C16 C17 C18 H18 179.3 180.2
C13 C18 C17 H18 180.0 180.3
C18 C17 C16 H16 178.3 179.8
C16 C17 C18 H17 180.0 180.2
C11 C19 O2 H19 120.2 120.0
O2 C19 C20 N4 150.9 175.0
O4 C20 C19 N4 177.4 180.0
C19 C20 N4 C25 355.7 0.0
C19 C20 N4 C21 178.9 179.8
C19 C20 O4 N4 182.7 180.0
O4 C20 N4 C25 178.3 180.0
O4 C20 N4 C21 1.5 359.8
C21 N4 C20 C25 183.2 179.8
C20 N4 C25 S2 171.2 204.8
C20 N4 C25 H25 291.2 323.1
C20 N4 C25 H25A 51.2 86.5
C20 N4 C21 H21 40.6 57.9
C20 N4 C25 C21 183.1 179.8
C25 N4 C21 H21 223.5 237.6
S2 C25 N4 H25 240.0 241.7
S2 C25 N4 H25A 120.0 118.3
H25 C25 N4 H25A 240.0 236.5
C20 N4 C21 C25 177.1 180.2
C21 N4 C25 S2 348.1 25.0
C21 N4 C25 H25 108.1 143.3
C21 N4 C25 H25A 228.1 266.8
C22 C21 N4 H21 118.8 120.9
N4 C21 C26 N5 147.5 161.5
N4 C25 S2 H25 120.0 118.3
N4 C25 S2 H25A 240.0 241.7
H25 C25 S2 H25A 120.0 123.4
N4 C25 S2 C22 30.5 326.6
S2 C22 C24 H24 180.0 61.4
S2 C22 C24 H24A 300.0 181.5
S2 C22 C24 H24B 60.0 301.4
S2 C22 C23 H23 180.0 58.5
S2 C22 C23 H23A 300.0 178.5
S2 C22 C23 H23B 60.0 298.5
S2 C22 C21 H21 161.4 98.2
C24 C22 C23 H23 302.6 182.6
C24 C22 C23 H23A 62.7 302.5
C24 C22 C23 H23B 182.7 62.5
C24 C22 C21 H21 44.0 340.0
H24 C24 C22 H24A 240.0 239.9
H24 C24 C22 H24B 120.0 120.0
H24A C24 C22 H24B 240.0 240.0
C23 C22 C24 H24 57.5 297.4
C23 C22 C24 H24A 177.5 57.5
C23 C22 C24 H24B 297.5 177.4
C23 C22 C21 H21 280.8 216.2
H23 C23 C22 H23A 240.0 240.0
H23 C23 C22 H23B 120.0 120.0
H23A C23 C22 H23B 240.0 240.0
C22 C21 N4 C25 342.3 358.5
N4 C21 C22 H21 237.1 239.1
C22 C21 C26 N5 266.3 285.2
C20 N4 C21 C26 284.4 299.9
O5 C26 C21 N5 181.9 180.0
C21 C26 N5 C27 181.9 180.0
C21 C26 N5 HN5 1.9 360.0
C21 C26 O5 N5 177.9 180.0
O5 C26 N5 C27 360.0 0.0
O5 C26 N5 HN5 180.0 180.0
C26 N5 C27 C28 102.7 180.0
C27 N5 C26 HN5 180.0 180.0
C26 N5 C27 H27 222.7 299.9
C26 N5 C27 H27A 342.7 60.0
C26 N5 C27 HN5 180.0 180.0
N5 C27 C28 C30 295.3 274.9
N5 C27 C28 C29 115.4 95.0
C28 C27 N5 H27 240.0 240.1
C28 C27 N5 H27A 120.0 120.0
H27 C27 N5 H27A 240.0 239.9
C28 C27 N5 HN5 282.7 0.0
N5 C27 C28 H27 120.0 119.9
N5 C27 C28 H27A 240.0 240.0
C30 C28 C27 C29 179.8 179.9
C27 C28 C30 H30 180.0 90.1
C27 C28 C30 H30A 300.0 210.0
C27 C28 C30 H30B 60.0 330.1
C27 C28 C29 H29 179.8 359.9
C27 C28 C29 H29A 359.8 180.0
H27 C27 C28 H27A 120.0 120.1
C27 C28 C30 C29 180.2 180.1
C30 C28 C27 H27 175.3 155.0
C30 C28 C27 H27A 55.3 34.9
C30 C28 C29 H29 0.0 180.0
C30 C28 C29 H29A 180.0 0.1
H30 C30 C28 H30A 240.0 240.0
H30 C30 C28 H30B 120.0 120.0
H30A C30 C28 H30B 240.0 240.0
C27 C28 C29 C30 179.8 179.9
C29 C28 C27 H27 355.4 335.1
C29 C28 C27 H27A 235.4 215.0
C29 C28 C30 H30 359.8 269.9
C29 C28 C30 H30A 119.8 29.9
C29 C28 C30 H30B 239.8 149.9
H29 C29 C28 H29A 180.0 179.9
H6 C6 C7 C8 270.6 269.7
H6A C6 H6 H6B 120.0 120.1
H6A C6 C7 C8 30.6 29.8
H6 C6 H6A H6B 240.0 239.9
H6B C6 C7 C8 150.6 149.8
H6 C6 H6B H6A 120.0 120.2
H5 C5 C7 C8 179.4 180.2
C4 N1 HN1 HN1A 120.0 180.1
C4 N1 HN1A HN1 239.9 179.9
H3 C3 C2 C8 179.9 179.8
C2 C1 H1 H1A 120.0 120.0
C2 C1 H1 H1B 240.0 240.0
H1A C1 H1 H1B 120.0 120.0
C2 C1 H1A H1 240.0 240.0
C2 C1 H1A H1B 120.0 120.0
H1 C1 H1A H1B 240.0 240.0
C2 C1 H1B H1 120.0 120.0
C2 C1 H1B H1A 240.0 240.1
H1 C1 H1B H1A 120.0 120.1
O1 C9 H9 C10 240.1 239.9
O1 C9 H9 H9A 120.0 119.9
H9 C9 C10 O6 44.0 240.0
H9 C9 C10 N3 224.2 60.0
C10 C9 H9 H9A 239.9 240.0
O1 C9 H9A C10 119.9 120.0
O1 C9 H9A H9 240.0 240.1
H9A C9 C10 O6 284.0 120.0
H9A C9 C10 N3 104.1 300.0
C10 C9 H9A H9 120.1 120.1
C10 N3 HN3 C11 180.0 180.0
HN3 N3 C11 C12 306.1 265.0
HN3 N3 C11 C19 71.0 25.0
HN3 N3 C11 H11 188.8 145.0
N3 C11 H11 C12 119.9 120.0
N3 C11 H11 C19 240.5 240.0
H11 C11 N3 HN3 188.8 145.0
H11 C11 C12 H12 186.1 175.0
H11 C11 C12 H12A 306.1 295.0
H11 C11 C19 O2 155.9 175.0
H11 C11 C19 H19 274.8 295.0
C11 C12 H12 H12A 119.0 120.0
H12 C12 C13 C14 164.9 330.0
H12 C12 C13 C18 342.1 149.7
C11 C12 H12A H12 241.0 240.0
H12A C12 C13 C14 45.0 210.0
H12A C12 C13 C18 222.1 29.7
H14 C14 C13 C18 178.8 180.2
C13 C14 H14 C15 180.0 180.1
H14 C14 C15 H15 358.8 0.0
H15 C15 C14 H14 358.8 0.0
H15 C15 C16 C17 182.7 180.0
H15 C15 C16 H16 2.6 360.0
C15 C16 H16 C17 180.0 180.0
H16 C16 C17 C18 178.3 179.8
H16 C16 C17 H17 358.3 0.0
C16 C17 H17 C18 180.0 179.8
H17 C17 C16 H16 358.3 0.0
H17 C17 C18 H18 359.3 0.0
C11 C19 H19 O2 240.7 240.0
H19 C19 O2 HO2 131.7 180.0
H19 C19 C20 N4 32.1 55.0
HO2 O2 C19 H19 131.7 180.0
N4 C25 H25 S2 242.8 246.8
N4 C25 H25 H25A 121.4 123.4
S2 C25 H25 H25A 238.6 236.7
N4 C25 H25A S2 117.2 113.2
N4 C25 H25A H25 238.6 236.6
S2 C25 H25A H25 121.4 123.3
C22 C24 H24 H24A 120.0 120.0
C22 C24 H24 H24B 240.0 240.1
H24A C24 H24 H24B 120.0 120.0
C22 C24 H24A H24 240.0 240.0
C22 C24 H24A H24B 120.0 119.9
H24 C24 H24A H24B 240.0 239.9
C22 C24 H24B H24 120.0 120.0
C22 C24 H24B H24A 240.0 240.0
H24 C24 H24B H24A 120.0 120.1
H23 C23 C22 C24 302.6 182.6
C22 C23 H23 H23A 120.0 120.0
C22 C23 H23 H23B 240.0 240.0
H23A C23 H23 H23B 120.0 120.0
H23A C23 C22 C24 62.7 302.5
C22 C23 H23A H23 239.9 240.0
C22 C23 H23A H23B 120.0 120.0
H23 C23 H23A H23B 240.1 240.0
H23B C23 C22 C24 182.7 62.5
C22 C23 H23B H23 120.0 120.0
C22 C23 H23B H23A 240.0 240.0
H23 C23 H23B H23A 120.0 120.0
H21 C21 N4 C25 223.5 237.6
H21 C21 C26 N5 24.8 43.3
C26 N5 HN5 C27 180.0 180.0
HN5 N5 C27 C28 282.7 0.0
HN5 N5 C27 H27 42.7 119.9
HN5 N5 C27 H27A 162.7 240.0
N5 C27 H27 C28 239.4 240.1
H27 C27 N5 HN5 42.7 119.9
N5 C27 H27 H27A 119.7 120.1
H27 C27 C28 C30 175.3 155.0
H27 C27 C28 C29 355.4 335.1
C28 C27 H27 H27A 240.3 239.9
N5 C27 H27A C28 120.5 119.9
H27A C27 N5 HN5 162.7 240.0
N5 C27 H27A H27 240.3 240.0
H27A C27 C28 C30 55.3 34.9
H27A C27 C28 C29 235.4 215.0
C28 C27 H27A H27 119.7 120.0
H30 C30 C28 C29 359.8 269.9
C28 C30 H30 H30A 120.0 120.0
C28 C30 H30 H30B 240.0 240.0
H30A C30 H30 H30B 120.0 120.0
H30A C30 C28 C29 119.8 29.9
C28 C30 H30A H30 240.0 240.0
C28 C30 H30A H30B 120.0 120.1
H30 C30 H30A H30B 240.0 240.0
H30B C30 C28 C29 239.8 149.9
C28 C30 H30B H30 120.0 120.0
C28 C30 H30B H30A 240.0 239.9
H30 C30 H30B H30A 120.0 120.0
C28 C29 H29 H29A 180.0 180.1
C28 C29 H29A H29 180.0 179.9