PDB Chemical Component KND
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for KND
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C26 |
O21 |
1.420 |
1.431 |
| C26 |
C25 |
1.519 |
1.531 |
| O21 |
C22 |
1.425 |
1.431 |
| C25 |
N24 |
1.472 |
1.470 |
| C22 |
C23 |
1.530 |
1.531 |
| N24 |
C23 |
1.482 |
1.470 |
| N24 |
C27 |
1.467 |
1.469 |
| C23 |
C18 |
1.534 |
1.530 |
| C17 |
C18 |
1.526 |
1.530 |
| C17 |
C15 |
1.517 |
1.507 |
| C15 |
C16 |
1.398 |
1.383 |
| C15 |
C14 |
1.392 |
1.382 |
| C16 |
C11 |
1.395 |
1.382 |
| C14 |
C13 |
1.393 |
1.384 |
| C08 |
C06 |
1.502 |
1.507 |
| C08 |
C09 |
1.538 |
1.530 |
| N02 |
C02 |
1.360 |
1.389 |
| N01 |
C06 |
1.341 |
1.319 |
| N01 |
C02 |
1.346 |
1.324 |
| C11 |
C09 |
1.509 |
1.507 |
| C11 |
C12 |
1.388 |
1.385 |
| C06 |
C05 |
1.387 |
1.380 |
| C02 |
C03 |
1.391 |
1.391 |
| C13 |
C12 |
1.378 |
1.386 |
| C13 |
F13 |
1.337 |
1.351 |
| C12 |
F12 |
1.348 |
1.351 |
| C05 |
C04 |
1.381 |
1.388 |
| C03 |
C04 |
1.392 |
1.384 |
| C04 |
C07 |
1.524 |
1.507 |
| C14 |
H1 |
1.080 |
1.080 |
| C18 |
H2 |
1.100 |
1.090 |
| C18 |
H3 |
1.100 |
1.090 |
| C17 |
H4 |
1.100 |
1.090 |
| C17 |
H5 |
1.100 |
1.091 |
| C16 |
H6 |
1.080 |
1.080 |
| C22 |
H7 |
1.100 |
1.090 |
| C22 |
H8 |
1.100 |
1.090 |
| C23 |
H9 |
1.100 |
1.090 |
| C25 |
H10 |
1.100 |
1.091 |
| C25 |
H11 |
1.100 |
1.090 |
| C26 |
H12 |
1.100 |
1.090 |
| C26 |
H13 |
1.100 |
1.089 |
| C27 |
H14 |
1.101 |
1.090 |
| C27 |
H15 |
1.100 |
1.091 |
| C27 |
H16 |
1.100 |
1.090 |
| C03 |
H17 |
1.080 |
1.080 |
| C05 |
H18 |
1.080 |
1.080 |
| C07 |
H19 |
1.100 |
1.090 |
| C07 |
H20 |
1.100 |
1.090 |
| C07 |
H21 |
1.100 |
1.091 |
| C08 |
H22 |
1.101 |
1.090 |
| C08 |
H23 |
1.100 |
1.090 |
| C09 |
H24 |
1.100 |
1.090 |
| C09 |
H25 |
1.100 |
1.091 |
| N02 |
H26 |
1.000 |
0.970 |
| N02 |
H27 |
1.000 |
0.970 |
Bond Angles for KND
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O21 |
C26 |
H12 |
109.4 |
109.5 |
| O21 |
C26 |
H13 |
109.4 |
109.5 |
| C26 |
C25 |
N24 |
113.1 |
109.3 |
| C26 |
C25 |
H10 |
108.6 |
109.5 |
| C26 |
C25 |
H11 |
108.6 |
109.5 |
| O21 |
C22 |
H7 |
109.7 |
109.5 |
| O21 |
C22 |
H8 |
109.7 |
109.6 |
| C25 |
N24 |
C27 |
104.9 |
111.0 |
| N24 |
C25 |
H10 |
108.6 |
109.5 |
| N24 |
C25 |
H11 |
108.5 |
109.5 |
| C23 |
C22 |
H7 |
109.7 |
109.5 |
| C23 |
C22 |
H8 |
109.7 |
109.5 |
| C22 |
C23 |
H9 |
107.7 |
109.5 |
| N24 |
C23 |
H9 |
108.3 |
109.5 |
| N24 |
C27 |
H14 |
109.5 |
109.5 |
| N24 |
C27 |
H15 |
109.5 |
109.4 |
| N24 |
C27 |
H16 |
109.5 |
109.5 |
| C23 |
C18 |
H2 |
108.6 |
109.5 |
| C23 |
C18 |
H3 |
108.6 |
109.5 |
| C17 |
C18 |
H2 |
108.7 |
109.5 |
| C17 |
C18 |
H3 |
108.6 |
109.4 |
| C17 |
C15 |
C16 |
119.8 |
120.0 |
| C15 |
C16 |
C11 |
120.0 |
120.1 |
| C15 |
C16 |
H6 |
120.0 |
119.9 |
| C15 |
C14 |
C13 |
119.4 |
120.0 |
| C15 |
C14 |
H1 |
120.3 |
120.0 |
| C16 |
C11 |
C09 |
120.7 |
120.1 |
| C16 |
C11 |
C12 |
119.9 |
119.9 |
| C11 |
C16 |
H6 |
120.0 |
120.0 |
| C14 |
C13 |
C12 |
121.1 |
120.0 |
| C14 |
C13 |
F13 |
120.8 |
120.0 |
| C13 |
C14 |
H1 |
120.3 |
120.0 |
| C11 |
C09 |
C08 |
114.2 |
109.5 |
| C09 |
C08 |
H22 |
112.0 |
109.5 |
| C09 |
C08 |
H23 |
112.1 |
109.5 |
| C08 |
C09 |
H24 |
108.3 |
109.5 |
| C08 |
C09 |
H25 |
108.3 |
109.5 |
| C11 |
C09 |
H24 |
108.3 |
109.4 |
| C11 |
C09 |
H25 |
108.3 |
109.5 |
| C11 |
C12 |
F12 |
122.0 |
120.0 |
| C06 |
C05 |
H18 |
120.5 |
120.4 |
| C02 |
C03 |
C04 |
120.1 |
119.1 |
| C02 |
C03 |
H17 |
119.9 |
120.5 |
| C12 |
C13 |
F13 |
118.1 |
120.0 |
| C13 |
C12 |
F12 |
118.2 |
120.1 |
| C05 |
C04 |
C07 |
119.5 |
120.8 |
| C03 |
C04 |
C07 |
121.6 |
120.7 |
| C04 |
C03 |
H17 |
119.9 |
120.4 |
| C04 |
C07 |
H19 |
109.5 |
109.5 |
| C04 |
C07 |
H20 |
109.5 |
109.5 |
| C04 |
C07 |
H21 |
109.4 |
109.5 |
| H2 |
C18 |
H3 |
109.4 |
109.5 |
| H4 |
C17 |
H5 |
109.4 |
109.5 |
| H7 |
C22 |
H8 |
109.5 |
109.5 |
| H10 |
C25 |
H11 |
109.4 |
109.5 |
| H12 |
C26 |
H13 |
109.5 |
109.5 |
| H14 |
C27 |
H15 |
109.5 |
109.5 |
| H14 |
C27 |
H16 |
109.4 |
109.5 |
| H15 |
C27 |
H16 |
109.4 |
109.4 |
| H19 |
C07 |
H20 |
109.5 |
109.5 |
| H19 |
C07 |
H21 |
109.5 |
109.5 |
| H20 |
C07 |
H21 |
109.5 |
109.4 |
| H22 |
C08 |
H23 |
109.5 |
109.5 |
| H24 |
C09 |
H25 |
109.5 |
109.4 |
| H26 |
N02 |
H27 |
109.4 |
119.9 |
Torsion Angles for KND
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O21 |
C26 |
C25 |
N24 |
307.4 |
303.1 |
| O21 |
C26 |
C25 |
H10 |
68.0 |
63.1 |
| O21 |
C26 |
C25 |
H11 |
186.8 |
183.1 |
| C26 |
O21 |
C22 |
H7 |
52.6 |
181.4 |
| C26 |
O21 |
C22 |
H8 |
172.9 |
61.3 |
| H12 |
C26 |
O21 |
H13 |
240.0 |
120.1 |
| C26 |
C25 |
N24 |
C27 |
160.6 |
182.4 |
| N24 |
C25 |
C26 |
H10 |
239.4 |
240.1 |
| N24 |
C25 |
C26 |
H11 |
120.5 |
120.0 |
| H10 |
C25 |
C26 |
H11 |
241.1 |
239.9 |
| C23 |
C22 |
O21 |
H7 |
240.1 |
120.0 |
| C23 |
C22 |
O21 |
H8 |
119.9 |
240.1 |
| O21 |
C22 |
C23 |
H9 |
295.6 |
296.9 |
| H7 |
C22 |
O21 |
H8 |
239.8 |
120.1 |
| C26 |
C25 |
N24 |
H10 |
120.6 |
119.9 |
| C26 |
C25 |
N24 |
H11 |
239.4 |
240.0 |
| C25 |
N24 |
C23 |
H9 |
76.3 |
61.4 |
| C25 |
N24 |
C27 |
H14 |
180.0 |
53.1 |
| C25 |
N24 |
C27 |
H15 |
300.0 |
173.1 |
| C25 |
N24 |
C27 |
H16 |
60.0 |
293.1 |
| H10 |
C25 |
N24 |
H11 |
118.9 |
120.1 |
| O21 |
C22 |
C23 |
H7 |
119.9 |
240.1 |
| O21 |
C22 |
C23 |
H8 |
240.1 |
120.0 |
| N24 |
C23 |
C22 |
H9 |
119.1 |
119.9 |
| C22 |
C23 |
C18 |
H2 |
25.7 |
303.4 |
| C22 |
C23 |
C18 |
H3 |
144.7 |
183.4 |
| H7 |
C22 |
C23 |
H8 |
120.3 |
239.9 |
| N24 |
C23 |
C22 |
H7 |
294.8 |
176.8 |
| N24 |
C23 |
C22 |
H8 |
174.5 |
296.9 |
| C22 |
C23 |
N24 |
H9 |
241.3 |
240.1 |
| N24 |
C23 |
C18 |
H2 |
150.4 |
63.3 |
| N24 |
C23 |
C18 |
H3 |
269.4 |
303.2 |
| C27 |
N24 |
C25 |
H10 |
40.0 |
62.5 |
| C27 |
N24 |
C25 |
H11 |
281.1 |
302.4 |
| C27 |
N24 |
C23 |
H9 |
319.5 |
297.6 |
| H14 |
C27 |
N24 |
H15 |
240.0 |
240.0 |
| H14 |
C27 |
N24 |
H16 |
120.0 |
120.0 |
| H15 |
C27 |
N24 |
H16 |
240.0 |
240.1 |
| C17 |
C18 |
C23 |
H2 |
239.5 |
120.0 |
| C17 |
C18 |
C23 |
H3 |
120.5 |
240.0 |
| H2 |
C18 |
C23 |
H3 |
241.0 |
120.0 |
| C23 |
C18 |
C17 |
H2 |
120.5 |
240.0 |
| C23 |
C18 |
C17 |
H3 |
239.5 |
120.0 |
| C18 |
C17 |
C15 |
C16 |
147.0 |
90.0 |
| H2 |
C18 |
C17 |
H3 |
119.0 |
240.0 |
| C17 |
C15 |
C16 |
C11 |
179.3 |
180.0 |
| C17 |
C15 |
C16 |
H6 |
359.3 |
360.0 |
| C17 |
C15 |
C14 |
C13 |
180.7 |
180.0 |
| C17 |
C15 |
C14 |
H1 |
0.6 |
359.7 |
| C16 |
C15 |
C14 |
C13 |
0.3 |
0.0 |
| C16 |
C15 |
C14 |
H1 |
180.3 |
179.6 |
| C15 |
C16 |
C11 |
C09 |
180.1 |
180.0 |
| C15 |
C16 |
C11 |
C12 |
0.1 |
0.2 |
| C11 |
C16 |
C15 |
H6 |
180.0 |
180.1 |
| C15 |
C14 |
C13 |
C12 |
360.0 |
359.6 |
| C15 |
C14 |
C13 |
F13 |
179.5 |
179.7 |
| C13 |
C14 |
C15 |
H1 |
180.0 |
180.4 |
| C15 |
C16 |
C11 |
H6 |
180.0 |
179.9 |
| C16 |
C11 |
C09 |
C08 |
360.0 |
99.9 |
| C16 |
C11 |
C09 |
H24 |
239.2 |
220.0 |
| C16 |
C11 |
C09 |
H25 |
120.6 |
339.9 |
| C16 |
C11 |
C12 |
F12 |
180.0 |
180.1 |
| C15 |
C14 |
C13 |
H1 |
180.0 |
179.6 |
| C12 |
C13 |
C14 |
F13 |
180.5 |
179.9 |
| C14 |
C13 |
C12 |
F12 |
180.0 |
180.0 |
| C11 |
C09 |
C08 |
C06 |
175.5 |
180.0 |
| C08 |
C06 |
C05 |
H18 |
3.5 |
0.0 |
| C11 |
C09 |
C08 |
H24 |
239.3 |
120.0 |
| C11 |
C09 |
C08 |
H25 |
120.7 |
240.0 |
| H22 |
C08 |
C09 |
H23 |
123.5 |
120.0 |
| H24 |
C09 |
C08 |
H25 |
241.4 |
120.0 |
| N02 |
C02 |
C03 |
H17 |
359.6 |
359.7 |
| N01 |
C06 |
C05 |
H18 |
178.4 |
180.1 |
| N01 |
C02 |
C03 |
H17 |
178.7 |
180.0 |
| C16 |
C11 |
C09 |
C12 |
180.0 |
180.2 |
| C09 |
C11 |
C16 |
H6 |
0.1 |
0.1 |
| C11 |
C09 |
C08 |
H22 |
57.3 |
60.0 |
| C11 |
C09 |
C08 |
H23 |
293.7 |
300.0 |
| C08 |
C09 |
C11 |
H24 |
120.7 |
239.9 |
| C08 |
C09 |
C11 |
H25 |
239.3 |
120.0 |
| C09 |
C11 |
C12 |
F12 |
360.0 |
0.3 |
| H24 |
C09 |
C11 |
H25 |
118.6 |
240.1 |
| C16 |
C11 |
C12 |
C09 |
180.0 |
179.8 |
| C12 |
C11 |
C16 |
H6 |
180.1 |
180.3 |
| C11 |
C12 |
C13 |
F13 |
180.2 |
180.6 |
| C13 |
C12 |
C11 |
F12 |
180.2 |
179.4 |
| C06 |
C05 |
C04 |
C07 |
180.8 |
180.0 |
| C02 |
C03 |
C04 |
C07 |
180.6 |
180.0 |
| C04 |
C03 |
C02 |
H17 |
180.0 |
180.0 |
| C16 |
C11 |
C12 |
C13 |
0.2 |
359.4 |
| C14 |
C13 |
C12 |
F13 |
179.5 |
180.1 |
| C12 |
C13 |
C14 |
H1 |
180.0 |
180.0 |
| C11 |
C12 |
C13 |
F12 |
179.8 |
180.6 |
| C14 |
C13 |
F13 |
C12 |
180.5 |
179.9 |
| F13 |
C13 |
C14 |
H1 |
359.5 |
0.1 |
| F13 |
C13 |
C12 |
F12 |
0.4 |
359.9 |
| F12 |
C12 |
C13 |
F13 |
0.4 |
359.9 |
| C03 |
C04 |
C05 |
C07 |
179.6 |
179.9 |
| C05 |
C04 |
C03 |
H17 |
180.9 |
180.0 |
| C05 |
C04 |
C07 |
H19 |
89.8 |
270.0 |
| C05 |
C04 |
C07 |
H20 |
209.8 |
30.0 |
| C05 |
C04 |
C07 |
H21 |
329.8 |
149.9 |
| C02 |
C03 |
C04 |
H17 |
180.0 |
180.0 |
| C05 |
C04 |
C03 |
C07 |
180.4 |
180.1 |
| C03 |
C04 |
C07 |
H19 |
270.2 |
90.0 |
| C03 |
C04 |
C07 |
H20 |
30.2 |
210.0 |
| C03 |
C04 |
C07 |
H21 |
150.2 |
330.0 |
| C07 |
C04 |
C03 |
H17 |
0.6 |
360.0 |
| H19 |
C07 |
C04 |
H20 |
240.0 |
240.0 |
| H19 |
C07 |
C04 |
H21 |
120.0 |
120.0 |
| H20 |
C07 |
C04 |
H21 |
240.0 |
240.0 |
| C15 |
C14 |
H1 |
C13 |
180.0 |
180.4 |
| H1 |
C14 |
C13 |
C12 |
180.0 |
180.0 |
| H1 |
C14 |
C13 |
F13 |
359.5 |
0.1 |
| C23 |
C18 |
H2 |
H3 |
118.5 |
239.9 |
| C17 |
C18 |
H2 |
H3 |
241.5 |
120.0 |
| C23 |
C18 |
H3 |
H2 |
241.5 |
120.0 |
| C17 |
C18 |
H3 |
H2 |
118.5 |
240.0 |
| H4 |
C17 |
C18 |
H2 |
184.8 |
174.2 |
| H4 |
C17 |
C18 |
H3 |
65.9 |
294.2 |
| H4 |
C17 |
C15 |
C16 |
26.6 |
210.0 |
| H5 |
C17 |
C18 |
H2 |
303.9 |
54.2 |
| H5 |
C17 |
C18 |
H3 |
184.9 |
174.2 |
| H5 |
C17 |
C15 |
C16 |
267.5 |
330.0 |
| C15 |
C16 |
H6 |
C11 |
180.0 |
180.1 |
| H6 |
C16 |
C11 |
C09 |
0.1 |
0.1 |
| H6 |
C16 |
C11 |
C12 |
180.1 |
180.3 |
| O21 |
C22 |
H7 |
H8 |
120.3 |
239.9 |
| C23 |
C22 |
H7 |
H8 |
239.6 |
120.0 |
| H7 |
C22 |
C23 |
H9 |
175.7 |
56.9 |
| O21 |
C22 |
H8 |
H7 |
239.7 |
120.1 |
| C23 |
C22 |
H8 |
H7 |
120.4 |
239.9 |
| H8 |
C22 |
C23 |
H9 |
55.4 |
176.9 |
| H9 |
C23 |
C22 |
H7 |
175.7 |
56.9 |
| H9 |
C23 |
C22 |
H8 |
55.4 |
176.9 |
| H9 |
C23 |
C18 |
H2 |
268.9 |
183.3 |
| H9 |
C23 |
C18 |
H3 |
27.9 |
63.3 |
| C26 |
C25 |
H10 |
N24 |
236.7 |
240.2 |
| C26 |
C25 |
H10 |
H11 |
118.4 |
120.1 |
| H10 |
C25 |
N24 |
C27 |
40.0 |
62.5 |
| N24 |
C25 |
H10 |
H11 |
241.7 |
239.9 |
| C26 |
C25 |
H11 |
N24 |
123.3 |
119.9 |
| C26 |
C25 |
H11 |
H10 |
241.7 |
239.9 |
| H11 |
C25 |
N24 |
C27 |
281.1 |
302.4 |
| N24 |
C25 |
H11 |
H10 |
118.3 |
120.1 |
| O21 |
C26 |
H12 |
H13 |
119.9 |
239.9 |
| H12 |
C26 |
C25 |
N24 |
187.4 |
63.0 |
| H12 |
C26 |
C25 |
H10 |
307.9 |
183.0 |
| H12 |
C26 |
C25 |
H11 |
66.8 |
303.0 |
| O21 |
C26 |
H13 |
H12 |
240.1 |
120.1 |
| H13 |
C26 |
C25 |
N24 |
67.4 |
183.2 |
| H13 |
C26 |
C25 |
H10 |
188.0 |
303.2 |
| H13 |
C26 |
C25 |
H11 |
306.9 |
63.2 |
| N24 |
C27 |
H14 |
H15 |
120.0 |
120.0 |
| N24 |
C27 |
H14 |
H16 |
240.0 |
240.0 |
| H15 |
C27 |
H14 |
H16 |
120.0 |
120.0 |
| N24 |
C27 |
H15 |
H14 |
239.9 |
240.0 |
| N24 |
C27 |
H15 |
H16 |
120.0 |
120.0 |
| H14 |
C27 |
H15 |
H16 |
240.0 |
240.0 |
| N24 |
C27 |
H16 |
H14 |
120.0 |
120.0 |
| N24 |
C27 |
H16 |
H15 |
240.0 |
240.1 |
| H14 |
C27 |
H16 |
H15 |
120.0 |
120.0 |
| C02 |
C03 |
H17 |
C04 |
180.0 |
180.0 |
| H17 |
C03 |
C04 |
C07 |
0.6 |
360.0 |
| H18 |
C05 |
C04 |
C07 |
0.8 |
0.0 |
| C04 |
C07 |
H19 |
H20 |
120.0 |
120.0 |
| C04 |
C07 |
H19 |
H21 |
240.0 |
239.9 |
| H20 |
C07 |
H19 |
H21 |
120.0 |
119.9 |
| C04 |
C07 |
H20 |
H19 |
240.0 |
240.0 |
| C04 |
C07 |
H20 |
H21 |
120.0 |
120.0 |
| H19 |
C07 |
H20 |
H21 |
240.0 |
240.0 |
| C04 |
C07 |
H21 |
H19 |
120.0 |
120.1 |
| C04 |
C07 |
H21 |
H20 |
240.0 |
240.0 |
| H19 |
C07 |
H21 |
H20 |
120.0 |
120.0 |
| C09 |
C08 |
H22 |
H23 |
235.0 |
240.0 |
| H22 |
C08 |
C09 |
H24 |
178.0 |
300.0 |
| H22 |
C08 |
C09 |
H25 |
296.6 |
180.0 |
| C09 |
C08 |
H23 |
H22 |
125.0 |
120.0 |
| H23 |
C08 |
C09 |
H24 |
54.5 |
180.0 |
| H23 |
C08 |
C09 |
H25 |
173.0 |
60.0 |
| C11 |
C09 |
H24 |
C08 |
124.3 |
240.0 |
| H24 |
C09 |
C08 |
H22 |
178.0 |
300.0 |
| H24 |
C09 |
C08 |
H23 |
54.5 |
180.0 |
| C08 |
C09 |
H24 |
H25 |
117.8 |
240.0 |
| C11 |
C09 |
H24 |
H25 |
242.1 |
120.0 |
| C11 |
C09 |
H25 |
C08 |
235.7 |
120.0 |
| H25 |
C09 |
C08 |
H22 |
296.6 |
180.0 |
| H25 |
C09 |
C08 |
H23 |
173.0 |
60.0 |
| C08 |
C09 |
H25 |
H24 |
242.2 |
120.0 |
| C11 |
C09 |
H25 |
H24 |
117.9 |
240.1 |