PDB Chemical Component KNA
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for KNA
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
O2 |
C1 |
1.366 |
1.208 |
C1 |
C2 |
1.518 |
1.507 |
C1 |
O1 |
1.235 |
1.342 |
O1 |
HO1 |
0.950 |
0.967 |
C3 |
C2 |
1.542 |
1.530 |
C2 |
H2 |
1.100 |
1.090 |
C2 |
H2A |
1.100 |
1.090 |
C3 |
C4 |
1.540 |
1.530 |
C3 |
H3 |
1.100 |
1.090 |
C3 |
H3A |
1.100 |
1.090 |
C5 |
C4 |
1.537 |
1.530 |
C4 |
H4 |
1.100 |
1.090 |
C4 |
H4A |
1.100 |
1.090 |
C5 |
C6 |
1.538 |
1.530 |
C5 |
H5 |
1.100 |
1.090 |
C5 |
H5A |
1.100 |
1.090 |
C6 |
C7 |
1.534 |
1.530 |
C6 |
H6 |
1.100 |
1.090 |
C6 |
H6A |
1.100 |
1.090 |
C7 |
C8 |
1.549 |
1.530 |
C7 |
H7 |
1.100 |
1.090 |
C7 |
H7A |
1.100 |
1.090 |
C8 |
C9 |
1.528 |
1.530 |
C8 |
H8 |
1.100 |
1.090 |
C8 |
H8A |
1.100 |
1.090 |
C9 |
H9 |
1.100 |
1.090 |
C9 |
H9A |
1.100 |
1.089 |
C9 |
H9B |
1.100 |
1.090 |
Bond Angles for KNA
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
O1 |
C1 |
C2 |
119.4 |
120.0 |
C1 |
C2 |
H2 |
107.9 |
109.5 |
C1 |
C2 |
H2A |
107.8 |
109.5 |
C1 |
O1 |
HO1 |
109.5 |
117.0 |
C3 |
C2 |
H2 |
107.8 |
109.5 |
C3 |
C2 |
H2A |
107.9 |
109.5 |
H2 |
C2 |
H2A |
111.0 |
109.4 |
C4 |
C3 |
H3 |
109.8 |
109.5 |
C4 |
C3 |
H3A |
109.8 |
109.5 |
C3 |
C4 |
H4 |
108.6 |
109.5 |
C3 |
C4 |
H4A |
108.6 |
109.5 |
H3 |
C3 |
H3A |
109.1 |
109.5 |
C5 |
C4 |
H4 |
108.6 |
109.4 |
C5 |
C4 |
H4A |
108.6 |
109.5 |
H4 |
C4 |
H4A |
110.3 |
109.5 |
C6 |
C5 |
H5 |
109.1 |
109.5 |
C6 |
C5 |
H5A |
109.2 |
109.5 |
C5 |
C6 |
C7 |
108.8 |
109.4 |
C5 |
C6 |
H6 |
109.7 |
109.5 |
C5 |
C6 |
H6A |
109.7 |
109.5 |
H5 |
C5 |
H5A |
109.8 |
109.5 |
C7 |
C6 |
H6 |
109.7 |
109.4 |
C7 |
C6 |
H6A |
109.7 |
109.5 |
C6 |
C7 |
C8 |
113.2 |
109.5 |
C6 |
C7 |
H7 |
108.2 |
109.5 |
C6 |
C7 |
H7A |
108.2 |
109.5 |
H6 |
C6 |
H6A |
109.2 |
109.5 |
C8 |
C7 |
H7 |
108.2 |
109.4 |
C8 |
C7 |
H7A |
108.2 |
109.5 |
C7 |
C8 |
C9 |
109.2 |
109.5 |
C7 |
C8 |
H8 |
109.5 |
109.5 |
C7 |
C8 |
H8A |
109.6 |
109.5 |
H7 |
C7 |
H7A |
110.7 |
109.4 |
C9 |
C8 |
H8 |
109.5 |
109.5 |
C9 |
C8 |
H8A |
109.5 |
109.5 |
C8 |
C9 |
H9 |
109.5 |
109.4 |
C8 |
C9 |
H9A |
109.5 |
109.5 |
C8 |
C9 |
H9B |
109.5 |
109.4 |
H8 |
C8 |
H8A |
109.4 |
109.4 |
H9 |
C9 |
H9A |
109.5 |
109.5 |
H9 |
C9 |
H9B |
109.4 |
109.4 |
H9A |
C9 |
H9B |
109.5 |
109.5 |
Torsion Angles for KNA
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
O2 |
C1 |
C2 |
H2 |
155.8 |
120.3 |
O2 |
C1 |
C2 |
H2A |
275.8 |
240.3 |
O2 |
C1 |
O1 |
HO1 |
0.0 |
359.7 |
C2 |
C1 |
O1 |
HO1 |
180.5 |
179.9 |
C3 |
C2 |
C1 |
H2 |
240.0 |
239.9 |
C3 |
C2 |
C1 |
H2A |
120.0 |
120.0 |
H2 |
C2 |
C1 |
H2A |
240.0 |
240.1 |
O1 |
C1 |
C2 |
H2 |
335.2 |
300.1 |
O1 |
C1 |
C2 |
H2A |
95.2 |
60.0 |
HO1 |
O1 |
C1 |
C2 |
180.5 |
179.9 |
C1 |
C2 |
C3 |
H2 |
120.0 |
120.1 |
C1 |
C2 |
C3 |
H2A |
240.0 |
240.0 |
H2 |
C2 |
C3 |
H2A |
120.0 |
119.9 |
C1 |
C2 |
H2 |
H2A |
117.9 |
120.0 |
C3 |
C2 |
H2 |
H2A |
242.0 |
240.1 |
C1 |
C2 |
H2A |
H2 |
242.1 |
240.0 |
C3 |
C2 |
H2A |
H2 |
118.0 |
120.0 |
C4 |
C3 |
C2 |
H2 |
55.6 |
60.0 |
C4 |
C3 |
C2 |
H2A |
295.6 |
300.0 |
H3 |
C3 |
C4 |
H3A |
120.0 |
120.1 |
C5 |
C4 |
C3 |
H4 |
240.0 |
240.1 |
C5 |
C4 |
C3 |
H4A |
120.0 |
120.0 |
H4 |
C4 |
C3 |
H4A |
240.0 |
239.9 |
H3 |
C3 |
C2 |
H2 |
175.6 |
179.9 |
H3 |
C3 |
C2 |
H2A |
55.6 |
60.0 |
C4 |
C3 |
H3 |
H3A |
239.5 |
239.9 |
H3 |
C3 |
C4 |
H4 |
204.8 |
180.0 |
H3 |
C3 |
C4 |
H4A |
324.8 |
300.1 |
H3A |
C3 |
C2 |
H2 |
295.6 |
299.9 |
H3A |
C3 |
C2 |
H2A |
175.6 |
180.0 |
C4 |
C3 |
H3A |
H3 |
120.5 |
120.0 |
H3A |
C3 |
C4 |
H4 |
84.8 |
59.9 |
H3A |
C3 |
C4 |
H4A |
204.8 |
180.0 |
C5 |
C4 |
C3 |
H3 |
84.8 |
60.1 |
C5 |
C4 |
C3 |
H3A |
324.8 |
300.0 |
C3 |
C4 |
C5 |
H4 |
120.0 |
120.0 |
C3 |
C4 |
C5 |
H4A |
240.0 |
240.0 |
H4 |
C4 |
C5 |
H4A |
120.0 |
120.0 |
H4 |
C4 |
C3 |
H3 |
204.8 |
180.0 |
H4 |
C4 |
C3 |
H3A |
84.8 |
59.9 |
C3 |
C4 |
H4 |
H4A |
118.9 |
120.1 |
C5 |
C4 |
H4 |
H4A |
241.1 |
240.0 |
H4A |
C4 |
C3 |
H3 |
324.8 |
300.1 |
H4A |
C4 |
C3 |
H3A |
204.8 |
180.0 |
C3 |
C4 |
H4A |
H4 |
241.1 |
240.0 |
C5 |
C4 |
H4A |
H4 |
118.9 |
120.0 |
C6 |
C5 |
C4 |
H4 |
9.1 |
60.0 |
C6 |
C5 |
C4 |
H4A |
249.1 |
300.0 |
H5 |
C5 |
C6 |
H5A |
120.0 |
120.1 |
C7 |
C6 |
C5 |
H6 |
240.0 |
240.1 |
C7 |
C6 |
C5 |
H6A |
120.0 |
120.0 |
C5 |
C6 |
C7 |
C8 |
213.1 |
180.0 |
C5 |
C6 |
C7 |
H7 |
333.1 |
300.0 |
C5 |
C6 |
C7 |
H7A |
93.1 |
60.0 |
H6 |
C6 |
C5 |
H6A |
240.0 |
240.0 |
H5 |
C5 |
C4 |
H4 |
129.1 |
180.0 |
H5 |
C5 |
C4 |
H4A |
9.1 |
60.0 |
C6 |
C5 |
H5 |
H5A |
240.4 |
239.9 |
H5 |
C5 |
C6 |
C7 |
3.4 |
60.1 |
H5 |
C5 |
C6 |
H6 |
123.4 |
180.0 |
H5 |
C5 |
C6 |
H6A |
243.4 |
300.0 |
H5A |
C5 |
C4 |
H4 |
249.1 |
300.0 |
H5A |
C5 |
C4 |
H4A |
129.1 |
180.0 |
C6 |
C5 |
H5A |
H5 |
119.6 |
120.0 |
H5A |
C5 |
C6 |
C7 |
243.4 |
300.0 |
H5A |
C5 |
C6 |
H6 |
3.4 |
59.9 |
H5A |
C5 |
C6 |
H6A |
123.4 |
180.0 |
C7 |
C6 |
C5 |
H5 |
3.4 |
60.1 |
C7 |
C6 |
C5 |
H5A |
243.4 |
300.0 |
C5 |
C6 |
C7 |
H6 |
120.0 |
120.0 |
C5 |
C6 |
C7 |
H6A |
240.0 |
240.0 |
H6 |
C6 |
C7 |
H6A |
120.0 |
120.1 |
C8 |
C7 |
C6 |
H7 |
240.0 |
240.0 |
C8 |
C7 |
C6 |
H7A |
120.0 |
120.0 |
C6 |
C7 |
C8 |
C9 |
155.2 |
180.0 |
C6 |
C7 |
C8 |
H8 |
275.1 |
300.0 |
C6 |
C7 |
C8 |
H8A |
35.2 |
59.9 |
H7 |
C7 |
C6 |
H7A |
240.0 |
240.0 |
H6 |
C6 |
C5 |
H5 |
123.4 |
180.0 |
H6 |
C6 |
C5 |
H5A |
3.4 |
59.9 |
C5 |
C6 |
H6 |
C7 |
240.6 |
240.1 |
C5 |
C6 |
H6 |
H6A |
120.2 |
120.0 |
C7 |
C6 |
H6 |
H6A |
239.7 |
239.9 |
H6 |
C6 |
C7 |
C8 |
93.1 |
60.0 |
H6 |
C6 |
C7 |
H7 |
213.1 |
180.0 |
H6 |
C6 |
C7 |
H7A |
333.1 |
300.0 |
H6A |
C6 |
C5 |
H5 |
243.4 |
300.0 |
H6A |
C6 |
C5 |
H5A |
123.4 |
180.0 |
C5 |
C6 |
H6A |
C7 |
119.4 |
120.0 |
C5 |
C6 |
H6A |
H6 |
239.8 |
240.0 |
C7 |
C6 |
H6A |
H6 |
120.3 |
120.0 |
H6A |
C6 |
C7 |
C8 |
333.1 |
300.0 |
H6A |
C6 |
C7 |
H7 |
93.0 |
60.0 |
H6A |
C6 |
C7 |
H7A |
213.1 |
180.0 |
C8 |
C7 |
C6 |
H6 |
93.1 |
60.0 |
C8 |
C7 |
C6 |
H6A |
333.1 |
300.0 |
C6 |
C7 |
C8 |
H7 |
120.0 |
120.0 |
C6 |
C7 |
C8 |
H7A |
240.0 |
239.9 |
H7 |
C7 |
C8 |
H7A |
120.0 |
119.9 |
C9 |
C8 |
C7 |
H8 |
240.0 |
240.0 |
C9 |
C8 |
C7 |
H8A |
120.0 |
120.1 |
C7 |
C8 |
C9 |
H9 |
180.0 |
300.0 |
C7 |
C8 |
C9 |
H9A |
300.0 |
60.0 |
C7 |
C8 |
C9 |
H9B |
60.0 |
180.0 |
H8 |
C8 |
C7 |
H8A |
240.0 |
240.1 |
H7 |
C7 |
C6 |
H6 |
213.1 |
180.0 |
H7 |
C7 |
C6 |
H6A |
93.0 |
60.0 |
C6 |
C7 |
H7 |
C8 |
237.0 |
240.0 |
C6 |
C7 |
H7 |
H7A |
118.5 |
120.1 |
C8 |
C7 |
H7 |
H7A |
241.5 |
240.1 |
H7 |
C7 |
C8 |
C9 |
35.2 |
60.0 |
H7 |
C7 |
C8 |
H8 |
155.2 |
180.0 |
H7 |
C7 |
C8 |
H8A |
275.2 |
299.9 |
H7A |
C7 |
C6 |
H6 |
333.1 |
300.0 |
H7A |
C7 |
C6 |
H6A |
213.1 |
180.0 |
C6 |
C7 |
H7A |
C8 |
123.0 |
120.1 |
C6 |
C7 |
H7A |
H7 |
241.5 |
239.9 |
C8 |
C7 |
H7A |
H7 |
118.5 |
119.9 |
H7A |
C7 |
C8 |
C9 |
275.2 |
300.1 |
H7A |
C7 |
C8 |
H8 |
35.1 |
60.1 |
H7A |
C7 |
C8 |
H8A |
155.2 |
180.0 |
C9 |
C8 |
C7 |
H7 |
35.2 |
60.0 |
C9 |
C8 |
C7 |
H7A |
275.2 |
300.1 |
C7 |
C8 |
C9 |
H8 |
120.0 |
120.0 |
C7 |
C8 |
C9 |
H8A |
240.0 |
240.0 |
H8 |
C8 |
C9 |
H8A |
120.0 |
120.0 |
H9 |
C9 |
C8 |
H9A |
240.0 |
240.0 |
H9 |
C9 |
C8 |
H9B |
120.0 |
119.9 |
H9A |
C9 |
C8 |
H9B |
240.0 |
239.9 |
H8 |
C8 |
C7 |
H7 |
155.2 |
180.0 |
H8 |
C8 |
C7 |
H7A |
35.1 |
60.1 |
C7 |
C8 |
H8 |
C9 |
240.2 |
240.0 |
C7 |
C8 |
H8 |
H8A |
120.1 |
119.9 |
C9 |
C8 |
H8 |
H8A |
239.9 |
239.9 |
H8 |
C8 |
C9 |
H9 |
60.0 |
180.0 |
H8 |
C8 |
C9 |
H9A |
180.0 |
300.0 |
H8 |
C8 |
C9 |
H9B |
300.1 |
60.0 |
H8A |
C8 |
C7 |
H7 |
275.2 |
299.9 |
H8A |
C8 |
C7 |
H7A |
155.2 |
180.0 |
C7 |
C8 |
H8A |
C9 |
119.8 |
120.1 |
C7 |
C8 |
H8A |
H8 |
239.9 |
240.1 |
C9 |
C8 |
H8A |
H8 |
120.1 |
120.0 |
H8A |
C8 |
C9 |
H9 |
300.0 |
60.0 |
H8A |
C8 |
C9 |
H9A |
60.0 |
180.0 |
H8A |
C8 |
C9 |
H9B |
180.0 |
300.1 |
H9 |
C9 |
C8 |
H8 |
60.0 |
180.0 |
H9 |
C9 |
C8 |
H8A |
300.0 |
60.0 |
C8 |
C9 |
H9 |
H9A |
120.0 |
120.1 |
C8 |
C9 |
H9 |
H9B |
240.0 |
240.1 |
H9A |
C9 |
H9 |
H9B |
120.0 |
120.0 |
H9A |
C9 |
C8 |
H8 |
180.0 |
300.0 |
H9A |
C9 |
C8 |
H8A |
60.0 |
180.0 |
C8 |
C9 |
H9A |
H9 |
239.9 |
240.0 |
C8 |
C9 |
H9A |
H9B |
120.0 |
120.0 |
H9 |
C9 |
H9A |
H9B |
240.1 |
240.0 |
H9B |
C9 |
C8 |
H8 |
300.1 |
60.0 |
H9B |
C9 |
C8 |
H8A |
180.0 |
300.1 |
C8 |
C9 |
H9B |
H9 |
120.0 |
119.9 |
C8 |
C9 |
H9B |
H9A |
240.0 |
239.9 |
H9 |
C9 |
H9B |
H9A |
120.0 |
120.0 |