Atom Nomenclature for KN1

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for KN1

Atom Name (V3) Atom Name (V2)
CAA CAA
CAG CAG
CAN CAN
NAW NAW
NAO NAO
CAV CAV
CAT CAT
CAX CAX
FAE FAE
FAF FAF
FAD FAD
CAJ CAJ
CAH CAH
CAL CAL
CAU CAU
CAS CAS
CAR CAR
CAK CAK
CAI CAI
CAP CAP
OAB OAB
CAM CAM
CAQ CAQ
OAC OAC
HAA1 1HAA
HAA2 2HAA
HAG HAG
HAN1 1HAN
HAN2 2HAN
HAJ HAJ
HAH HAH
HAL HAL
HAK HAK
HAI HAI
HOAB HOAB
HAM HAM
HOAC HOAC