Atom Nomenclature for KKR

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for KKR

Atom Name (V3) Atom Name (V2)
C1 C1
C2 C2
C3 C3
C4 C4
C5 C5
O6 O6
C7 C7
C8 C8
C9 C9
O10 O10
N11 N11
C12 C12
C13 C13
N14 N14
C15 C15
C16 C16
C17 C17
C18 C18
C19 C19
C20 C20
N21 N21
C22 C22
N23 N23
C24 C24
C25 C25
S26 S26
N27 N27
C28 C28
C29 C29
O30 O30
C31 C31
C32 C32
C33 C33
C34 C34
C35 C35
C36 C36
C37 C37
N38 N38
N39 N39
C40 C40
C41 C41
H11C H11C
H12C H12C
H13C H13C
H31C H31C
H32C H32C
H33C H33C
H4C H4C
H71C H71C
H72C H72C
H81C H81C
H82C H82C
H121 H121
H122 H122
H161 H161
H162 H162
H131 H131
H132 H132
H151 H151
H152 H152
H171 H171
H172 H172
H19 H19
H281 H281
H282 H282
H321 H321
H322 H322
H291 H291
H292 H292
H311 H311
H312 H312
H34 H34
H35 H35
H36 H36
H38 H38
H40 H40