Atom Nomenclature for KI9

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for KI9

Atom Name (V3) Atom Name (V2)
CL1 CL1
C10 C10
C9 C9
CL2 CL2
C8 C8
CL3 CL3
C11 C11
C12 C12
C7 C7
C4 C4
C3 C3
C2 C2
CL5 CL5
C5 C5
C6 C6
CL6 CL6
C1 C1
N13 N13
O14 O14
H14 H14
H5 H5
H1 H1
H13 H13