PDB Chemical Component KE4

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for KE4

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
P OP1 1.493 1.479
P OP2 1.569 1.610
P OP3 1.476 1.610
P OP4 1.577 1.610
OP2 HOP2 0.950 0.967
OP3 HOP3 0.950 0.967
OP4 C5A 1.452 1.429
C5A C5 1.490 1.506
C5A H5A1 1.100 1.091
C5A H5A2 1.100 1.089
C5 C6 1.375 1.383
C5 C4 1.412 1.386
C6 N1 1.376 1.319
C6 H6 1.080 1.080
N1 C2 1.399 1.318
C2 C2A 1.540 1.507
C2 C3 1.400 1.388
C2A H2A1 1.100 1.090
C2A H2A2 1.100 1.089
C2A H2A3 1.100 1.090
C3 O3 1.400 1.359
C3 C4 1.426 1.391
O3 HO3 0.950 0.967
C4 C4A 1.548 1.507
C4A N4A 1.393 1.468
C4A H4A1 1.100 1.090
C4A H4A2 1.100 1.089
N4A CA 1.348 1.469
N4A HN4A 1.000 1.009
CA C 1.537 1.530
CA CB 1.571 1.530
CA HA 1.100 1.090
C N5 1.463 1.469
C H1 1.100 1.090
C H2 1.100 1.090
N5 HN51 1.000 1.009
N5 HN52 1.000 1.009
CB CG 1.552 1.530
CB HB1 1.100 1.090
CB HB2 1.100 1.090
CG CD 1.544 1.507
CG HG1 1.100 1.090
CG HG2 1.100 1.091
CD OE1 1.249 1.208
CD OE2 1.265 1.342
OE2 HOE2 0.950 0.967

Bond Angles for KE4

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
OP1 P OP2 111.1 109.5
OP1 P OP3 123.7 109.5
OP1 P OP4 107.9 109.5
OP2 P OP3 93.7 109.4
OP2 P OP4 109.5 109.5
P OP2 HOP2 109.5 106.8
OP3 P OP4 109.8 109.4
P OP3 HOP3 109.5 106.8
P OP4 C5A 124.3 106.8
OP4 C5A C5 107.5 109.5
OP4 C5A H5A1 110.6 109.5
OP4 C5A H5A2 110.1 109.5
C5 C5A H5A1 110.6 109.5
C5 C5A H5A2 110.1 109.5
C5A C5 C6 118.0 120.4
C5A C5 C4 121.4 120.4
H5A1 C5A H5A2 108.0 109.4
C6 C5 C4 120.6 119.2
C5 C6 N1 119.6 120.9
C5 C6 H6 120.2 119.5
C5 C4 C3 119.8 118.4
C5 C4 C4A 118.5 120.8
N1 C6 H6 120.2 119.6
C6 N1 C2 121.9 121.8
N1 C2 C2A 118.3 119.7
N1 C2 C3 119.6 120.7
C2A C2 C3 122.0 119.6
C2 C2A H2A1 109.5 109.5
C2 C2A H2A2 109.5 109.5
C2 C2A H2A3 109.5 109.4
C2 C3 O3 120.3 120.5
C2 C3 C4 118.5 119.0
H2A1 C2A H2A2 109.5 109.5
H2A1 C2A H2A3 109.5 109.5
H2A2 C2A H2A3 109.5 109.5
O3 C3 C4 121.2 120.5
C3 O3 HO3 109.5 106.9
C3 C4 C4A 121.8 120.8
C4 C4A N4A 126.2 109.4
C4 C4A H4A1 100.3 109.5
C4 C4A H4A2 104.2 109.5
N4A C4A H4A1 100.3 109.5
N4A C4A H4A2 104.2 109.5
C4A N4A CA 122.8 106.7
C4A N4A HN4A 105.2 106.7
H4A1 C4A H4A2 123.8 109.5
CA N4A HN4A 105.2 106.6
N4A CA C 117.9 109.5
N4A CA CB 120.5 109.5
N4A CA HA 137.7 109.5
C CA CB 121.6 109.5
C CA HA 103.8 109.5
CA C N5 111.4 109.5
CA C H1 108.4 109.4
CA C H2 108.8 109.5
CB CA HA 19.1 109.5
CA CB CG 115.6 109.5
CA CB HB1 106.1 109.5
CA CB HB2 107.5 109.5
N5 C H1 108.4 109.5
N5 C H2 108.8 109.5
C N5 HN51 109.5 106.7
C N5 HN52 109.5 106.7
H1 C H2 110.9 109.5
HN51 N5 HN52 109.5 106.7
CG CB HB1 106.0 109.5
CG CB HB2 107.5 109.4
CB CG CD 114.2 109.5
CB CG HG1 106.8 109.5
CB CG HG2 107.9 109.4
HB1 CB HB2 114.4 109.5
CD CG HG1 106.8 109.5
CD CG HG2 107.9 109.5
CG CD OE1 118.1 120.0
CG CD OE2 120.0 120.0
HG1 CG HG2 113.3 109.4
OE1 CD OE2 121.9 120.0
CD OE2 HOE2 109.5 120.0

Torsion Angles for KE4

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
OP2 P OP1 OP3 109.9 120.0
OP2 P OP1 OP4 240.0 240.0
OP1 P OP2 HOP2 317.7 180.0
OP3 P OP1 OP4 130.1 120.0
OP1 P OP3 HOP3 246.4 60.0
OP1 P OP4 C5A 180.6 305.0
OP1 P OP2 OP3 231.6 240.0
OP1 P OP2 OP4 119.1 120.0
OP3 P OP2 OP4 247.5 240.1
OP2 P OP3 HOP3 127.9 299.9
OP2 P OP4 C5A 301.6 65.0
OP1 P OP3 OP2 118.4 120.0
OP1 P OP3 OP4 230.7 240.0
OP2 P OP3 OP4 112.2 120.0
OP3 P OP2 HOP2 86.1 300.0
OP3 P OP4 C5A 43.1 185.0
OP1 P OP4 OP2 239.0 239.9
OP1 P OP4 OP3 137.5 120.0
OP2 P OP4 OP3 258.5 240.1
OP4 P OP2 HOP2 198.6 59.9
OP4 P OP3 HOP3 15.7 180.0
P OP4 C5A C5 194.5 180.0
P OP4 C5A H5A1 73.8 60.0
P OP4 C5A H5A2 314.5 300.1
HOP2 OP2 P OP3 86.1 300.0
HOP2 OP2 P OP4 198.6 59.9
HOP3 OP3 P OP4 15.7 180.0
C5 C5A OP4 H5A1 120.8 120.0
C5 C5A OP4 H5A2 240.0 239.9
OP4 C5A C5 C6 253.4 0.1
OP4 C5A C5 C4 73.4 180.1
H5A1 C5A OP4 H5A2 119.3 119.9
OP4 C5A C5 H5A1 239.2 240.0
OP4 C5A C5 H5A2 120.0 120.0
H5A1 C5A C5 H5A2 240.8 240.0
C6 C5 C5A C4 180.0 180.0
C5A C5 C6 N1 180.1 180.0
C5A C5 C6 H6 0.1 360.0
C5A C5 C4 C3 180.0 179.8
C5A C5 C4 C4A 360.0 360.0
OP4 C5A H5A1 C5 118.9 120.0
OP4 C5A H5A1 H5A2 239.4 240.0
C5 C5A H5A1 H5A2 120.5 120.1
H5A1 C5A C5 C6 14.2 120.0
H5A1 C5A C5 C4 194.2 300.0
OP4 C5A H5A2 C5 241.6 240.0
OP4 C5A H5A2 H5A1 120.8 120.0
C5 C5A H5A2 H5A1 239.2 240.0
H5A2 C5A C5 C6 133.4 240.0
H5A2 C5A C5 C4 313.4 60.0
C6 C5 C5A H5A1 14.2 120.0
C6 C5 C5A H5A2 133.4 240.0
C5A C5 C6 C4 180.0 180.0
C6 C5 C4 C3 360.0 359.8
C6 C5 C4 C4A 180.0 180.0
N1 C6 C5 H6 180.0 180.0
C5 C6 N1 C2 359.9 360.0
C4 C5 C5A H5A1 194.2 300.0
C4 C5 C5A H5A2 313.4 60.0
C5A C5 C4 C6 180.0 180.0
C4 C5 C6 N1 0.1 0.0
C4 C5 C6 H6 180.1 180.0
C2 C3 C4 C5 359.9 0.5
O3 C3 C4 C5 180.0 180.0
C3 C4 C5 C4A 180.0 179.8
C5 C4 C4A N4A 180.5 90.0
C5 C4 C4A H4A1 69.5 210.0
C5 C4 C4A H4A2 300.4 330.0
N1 C6 C5 C4 0.1 0.0
C5 C6 N1 H6 180.0 180.0
C6 N1 C2 C2A 179.9 180.0
C6 N1 C2 C3 0.0 0.3
H6 C6 C5 C4 180.1 180.0
C5 C6 H6 N1 180.0 180.0
H6 C6 N1 C2 179.9 180.0
C2 N1 C6 H6 179.9 180.0
C2A C2 N1 C3 179.8 179.7
N1 C2 C2A H2A1 318.2 90.0
N1 C2 C2A H2A2 198.2 210.0
N1 C2 C2A H2A3 78.2 330.0
N1 C2 C3 O3 179.9 180.0
N1 C2 C3 C4 0.0 359.5
N1 C2 C2A C3 180.2 180.3
C2A C2 C3 O3 0.1 0.2
C2A C2 C3 C4 180.2 179.8
H2A1 C2A C2 H2A2 120.0 239.9
H2A1 C2A C2 H2A3 240.0 120.0
H2A2 C2A C2 H2A3 120.0 240.0
C5 C4 C3 C2 359.9 0.5
N1 C2 C3 C2A 179.8 179.7
C3 C2 C2A H2A1 138.1 269.7
C3 C2 C2A H2A2 18.1 29.8
C3 C2 C2A H2A3 258.1 149.7
O3 C3 C2 C4 179.9 180.5
C2 C3 O3 HO3 323.7 269.5
C2 C3 C4 C4A 179.9 180.3
H2A1 C2A C2 C3 138.1 269.7
C2 C2A H2A1 H2A2 240.0 120.0
C2 C2A H2A1 H2A3 120.0 240.1
H2A2 C2A H2A1 H2A3 240.0 120.0
H2A2 C2A C2 C3 18.1 29.8
C2 C2A H2A2 H2A1 120.0 240.0
C2 C2A H2A2 H2A3 240.0 119.9
H2A1 C2A H2A2 H2A3 120.0 240.0
H2A3 C2A C2 C3 258.1 149.7
C2 C2A H2A3 H2A1 240.0 120.0
C2 C2A H2A3 H2A2 120.0 240.0
H2A1 C2A H2A3 H2A2 240.0 120.1
C5 C4 C3 O3 180.0 180.0
C2 C3 O3 C4 180.1 179.5
O3 C3 C4 C4A 0.0 359.8
C5 C4 C3 C4A 180.0 180.2
C2 C3 C4 O3 179.9 180.5
C4 C3 O3 HO3 143.6 90.0
C3 C4 C4A N4A 0.5 270.2
C3 C4 C4A H4A1 249.5 30.2
C3 C4 C4A H4A2 120.5 150.2
HO3 O3 C3 C4 143.6 90.0
C5 C4 C4A C3 180.0 179.8
N4A C4A C4 H4A1 111.0 240.0
N4A C4A C4 H4A2 240.0 120.0
C4 C4A N4A CA 189.9 173.5
C4 C4A N4A HN4A 309.9 287.2
H4A1 C4A C4 H4A2 129.0 240.0
C4 C4A N4A H4A1 249.0 120.0
C4 C4A N4A H4A2 120.0 240.0
H4A1 C4A N4A H4A2 231.0 120.0
CA N4A C4A HN4A 240.0 246.3
C4A N4A CA C 180.9 294.8
C4A N4A CA CB 0.6 54.9
C4A N4A CA HA 11.5 174.8
C4 C4A H4A1 N4A 130.1 240.0
C4 C4A H4A1 H4A2 245.0 120.0
N4A C4A H4A1 H4A2 114.9 240.0
H4A1 C4A N4A CA 300.9 53.5
H4A1 C4A N4A HN4A 60.9 167.2
C4 C4A H4A2 N4A 226.1 120.0
C4 C4A H4A2 H4A1 113.1 240.0
N4A C4A H4A2 H4A1 247.0 120.0
H4A2 C4A N4A CA 69.9 293.5
H4A2 C4A N4A HN4A 189.9 47.2
CA N4A C4A H4A1 300.9 53.5
CA N4A C4A H4A2 69.9 293.5
C4A N4A CA HN4A 120.0 113.8
C CA N4A CB 180.3 240.0
C CA N4A HA 169.4 120.0
N4A CA C N5 321.4 304.1
N4A CA C H1 202.2 64.1
N4A CA C H2 81.5 184.1
CB CA N4A HA 349.1 240.0
N4A CA CB CG 186.2 63.4
N4A CA CB HB1 69.1 183.4
N4A CA CB HB2 306.3 303.4
HN4A N4A C4A H4A1 60.9 167.2
HN4A N4A C4A H4A2 189.9 47.2
C4A N4A HN4A CA 229.0 246.2
HN4A N4A CA C 60.9 181.0
HN4A N4A CA CB 240.6 301.1
HN4A N4A CA HA 251.5 61.1
C CA N4A HN4A 60.9 181.0
N4A CA C CB 179.7 120.0
N4A CA C HA 187.3 240.0
CB CA C HA 7.6 120.0
C CA CB CG 6.0 183.4
C CA CB HB1 248.8 303.4
C CA CB HB2 126.0 63.4
N5 C CA H1 119.2 240.0
N5 C CA H2 240.0 120.0
CA C N5 HN51 215.4 65.4
CA C N5 HN52 95.4 179.2
H1 C CA H2 120.8 240.0
CB CA N4A HN4A 240.6 301.1
N4A CA CB C 180.3 240.0
N4A CA CB HA 157.1 120.0
C CA CB HA 336.8 240.0
CB CA C N5 141.7 184.1
CB CA C H1 22.5 304.1
CB CA C H2 261.7 64.0
CG CB CA HB1 117.2 240.0
CG CB CA HB2 240.0 120.0
CA CB CG CD 244.8 180.0
CA CB CG HG1 126.9 300.1
CA CB CG HG2 4.7 60.0
HB1 CB CA HB2 122.8 240.0
HA CA N4A HN4A 251.5 61.1
N4A CA HA C 170.3 120.0
N4A CA HA CB 330.1 240.0
C CA HA CB 159.8 120.0
HA CA C N5 134.1 64.1
HA CA C H1 14.9 184.1
HA CA C H2 254.1 304.1
HA CA CB CG 29.1 303.4
HA CA CB HB1 271.9 63.4
HA CA CB HB2 149.1 183.4
N5 C CA CB 141.7 184.1
N5 C CA HA 134.1 64.1
CA C N5 H1 240.8 119.9
CA C N5 H2 120.0 240.0
H1 C N5 H2 239.2 120.1
HN51 N5 C HN52 120.0 246.2
H1 C CA CB 22.5 304.1
H1 C CA HA 14.9 184.1
CA C H1 N5 121.1 240.0
CA C H1 H2 240.5 120.0
N5 C H1 H2 119.5 239.9
H1 C N5 HN51 334.6 305.5
H1 C N5 HN52 214.6 59.2
H2 C CA CB 261.7 64.0
H2 C CA HA 254.1 304.1
CA C H2 N5 238.4 120.0
CA C H2 H1 119.2 240.1
N5 C H2 H1 240.8 120.1
H2 C N5 HN51 95.4 185.4
H2 C N5 HN52 335.4 299.2
HN51 N5 C H1 334.6 305.5
HN51 N5 C H2 95.4 185.4
C N5 HN51 HN52 240.0 113.8
HN52 N5 C H1 214.6 59.2
HN52 N5 C H2 335.4 299.2
C N5 HN52 HN51 120.0 246.2
CG CB CA HA 29.1 303.4
CA CB CG HB1 242.8 120.0
CA CB CG HB2 120.0 240.0
HB1 CB CG HB2 237.2 120.0
CD CG CB HG1 117.9 239.9
CD CG CB HG2 240.0 120.0
CB CG CD OE1 178.3 0.1
CB CG CD OE2 358.4 180.0
HG1 CG CB HG2 122.1 240.1
HB1 CB CA HA 271.9 63.4
CA CB HB1 CG 123.4 240.0
CA CB HB1 HB2 241.7 120.0
CG CB HB1 HB2 118.3 240.0
HB1 CB CG CD 2.0 60.0
HB1 CB CG HG1 244.1 180.0
HB1 CB CG HG2 121.9 300.0
HB2 CB CA HA 149.1 183.4
CA CB HB2 CG 234.9 120.0
CA CB HB2 HB1 117.5 240.0
CG CB HB2 HB1 242.6 120.0
HB2 CB CG CD 124.7 300.0
HB2 CB CG HG1 6.8 60.1
HB2 CB CG HG2 244.7 180.0
CD CG CB HB1 2.0 60.0
CD CG CB HB2 124.7 300.0
CB CG CD HG1 242.1 120.1
CB CG CD HG2 120.0 240.1
HG1 CG CD HG2 237.9 120.0
OE1 CD CG OE2 179.9 180.0
CG CD OE2 HOE2 179.9 180.0
HG1 CG CB HB1 244.1 180.0
HG1 CG CB HB2 6.8 60.1
CB CG HG1 CD 122.7 239.9
CB CG HG1 HG2 241.3 119.9
CD CG HG1 HG2 118.6 240.0
HG1 CG CD OE1 296.2 240.0
HG1 CG CD OE2 116.3 60.0
HG2 CG CB HB1 121.9 300.0
HG2 CG CB HB2 244.7 180.0
CB CG HG2 CD 236.1 120.0
CB CG HG2 HG1 118.1 240.0
CD CG HG2 HG1 242.0 120.0
HG2 CG CD OE1 58.3 120.0
HG2 CG CD OE2 238.4 300.0
OE1 CD CG HG1 296.2 240.0
OE1 CD CG HG2 58.3 120.0
CG CD OE1 OE2 180.1 180.0
OE1 CD OE2 HOE2 360.0 360.0
OE2 CD CG HG1 116.3 60.0
OE2 CD CG HG2 238.4 300.0
CG CD OE2 OE1 179.9 180.0