PDB Chemical Component KDN

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for KDN

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C2	C3	1.543	1.531
C2	O2	1.423	1.429
C2	O6	1.370	1.429
C2	C1	1.550	1.506
C3	C4	1.540	1.532
C4	C5	1.535	1.532
C4	O4	1.436	1.429
C5	C6	1.548	1.530
C5	O5	1.460	1.429
C6	C7	1.524	1.531
C6	O6	1.437	1.429
C7	C8	1.544	1.530
C7	O7	1.449	1.428
C8	O8	1.448	1.429
C8	C9	1.549	1.531
O1B	C1	1.281	1.342
O1A	C1	1.263	1.209
O9	C9	1.450	1.428
C3	H31	1.100	1.090
C3	H32	1.101	1.090
O2	HO2	0.950	0.967
C4	H4	1.100	1.090
C5	H5	1.100	1.090
O4	HO4	0.950	0.967
C6	H6	1.100	1.090
O5	HO5	0.950	0.967
C7	H7	1.100	1.091
C8	H8	1.100	1.090
O7	HO7	0.950	0.967
O8	HO8	0.950	0.967
C9	H91	1.100	1.090
C9	H92	1.100	1.090
O1B	HO1B	0.950	0.967
O9	HO9	0.950	0.968

Bond Angles for KDN

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C3	C2	O2	109.5	109.5
C3	C2	O6	111.8	109.4
C1	C2	C3	110.4	109.5
C2	C3	C4	108.3	109.2
C2	C3	H31	109.8	109.5
C2	C3	H32	110.1	109.6
O6	C2	O2	111.1	109.5
C1	C2	O2	110.5	109.5
C2	O2	HO2	109.5	114.0
C1	C2	O6	103.3	109.5
C2	O6	C6	115.0	114.1
C3	C4	C5	108.3	109.0
C3	C4	O4	110.5	109.6
C4	C3	H31	109.9	109.5
C4	C3	H32	110.1	109.5
C3	C4	H4	109.6	109.5
C5	C4	O4	109.6	109.5
C4	C5	C6	109.6	109.2
C4	C5	O5	110.6	109.5
C5	C4	H4	110.5	109.6
C4	C5	H5	108.8	109.5
O4	C4	H4	108.3	109.7
C4	O4	HO4	109.5	114.0
C6	C5	O5	110.0	109.5
C5	C6	C7	114.7	109.5
C5	C6	O6	109.7	109.4
C6	C5	H5	109.4	109.6
C5	C6	H6	104.8	109.5
O5	C5	H5	108.4	109.6
C5	O5	HO5	109.5	114.0
C7	C6	O6	106.9	109.5
C6	C7	C8	108.9	109.5
C6	C7	O7	112.2	109.5
C7	C6	H6	107.8	109.4
C6	C7	H7	107.7	109.5
O6	C6	H6	113.0	109.5
C8	C7	O7	108.6	109.5
C7	C8	O8	110.7	109.5
C7	C8	C9	110.7	109.5
C8	C7	H7	111.4	109.5
C7	C8	H8	108.4	109.5
O7	C7	H7	108.0	109.5
C7	O7	HO7	109.5	114.0
C9	C8	O8	111.2	109.5
O8	C8	H8	107.8	109.5
C8	O8	HO8	109.5	114.0
C9	C8	H8	107.9	109.5
C8	C9	H91	109.0	109.4
C8	C9	H92	108.6	109.5
O9	C9	H91	109.0	109.5
O9	C9	H92	108.7	109.5
H31	C3	H32	108.6	109.6
H91	C9	H92	110.7	109.5

Torsion Angles for KDN

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
O6	C2	C3	O2	236.4	240.1
C1	C2	C3	O2	121.9	120.0
C3	C2	O2	HO2	247.7	180.0
C1	C2	C3	O6	245.5	240.0
C3	C2	O6	C6	59.8	61.1
C2	C3	C4	C5	56.5	57.0
C2	C3	C4	O4	176.5	176.8
C4	C3	C2	H31	240.0	240.1
C4	C3	C2	H32	120.5	119.9
C2	C3	C4	H4	295.8	297.1
H31	C3	C2	H32	240.5	239.8
C3	C2	O2	O6	235.9	240.1
C1	C2	O2	C3	238.2	240.0
O2	C2	C3	C4	65.8	62.4
O2	C2	C3	H31	185.8	182.3
O2	C2	C3	H32	305.3	302.4
C1	C2	O2	O6	114.1	120.1
O2	C2	O6	C6	297.1	301.2
C3	C2	O6	O2	122.7	119.9
C1	C2	O6	C3	118.8	120.0
O6	C2	C3	C4	302.1	302.4
O6	C2	C3	H31	62.1	62.3
O6	C2	C3	H32	181.7	182.5
C1	C2	O6	O2	241.5	240.0
O6	C2	O2	HO2	11.7	299.9
C5	C6	O6	C2	301.9	298.9
C7	C6	O6	C2	176.9	178.9
C2	O6	C6	H6	58.4	58.9
C3	C2	C1	O2	238.7	240.0
C3	C2	C1	O6	119.8	120.0
C1	C2	C3	C4	187.7	182.4
C1	C2	C3	H31	307.7	302.3
C1	C2	C3	H32	67.2	62.5
O6	C2	C1	O2	119.0	120.0
C1	C2	O2	HO2	125.8	60.0
C1	C2	O6	C6	178.5	181.1
C4	C3	C2	O2	65.8	62.4
C4	C3	C2	O6	302.1	302.4
C2	C3	C4	H31	120.0	119.9
C2	C3	C4	H32	239.5	240.0
C5	C4	C3	O4	240.0	240.2
C3	C4	C5	C6	303.1	303.0
C3	C4	C5	O5	181.7	183.1
C5	C4	C3	H4	120.7	119.8
C3	C4	C5	H5	62.7	63.0
O4	C4	C3	H4	240.7	239.7
C3	C4	O4	HO4	170.4	60.1
H31	C3	C4	H32	119.6	120.1
C3	C4	C5	O4	120.6	119.9
C5	C4	C3	H31	296.5	297.1
C5	C4	C3	H32	177.0	176.9
C3	C4	C5	H4	239.9	240.2
O4	C4	C5	H4	119.3	120.3
C5	C4	O4	HO4	289.6	179.6
C6	C5	C4	O5	121.4	119.9
C4	C5	C6	C7	176.0	177.6
C4	C5	C6	O6	55.7	57.6
C6	C5	C4	H5	240.4	240.1
C4	C5	C6	H6	294.1	297.6
O5	C5	C4	H5	119.0	120.2
C4	C5	O5	HO5	140.1	300.0
C3	C4	O4	C5	240.7	240.5
O4	C4	C3	H31	56.6	56.9
O4	C4	C3	H32	297.0	296.8
C3	C4	O4	H4	120.1	120.2
O4	C4	C5	C6	182.5	183.2
O4	C4	C5	O5	61.1	63.3
C5	C4	O4	H4	239.4	239.7
O4	C4	C5	H5	302.1	303.1
C2	O6	C6	C5	301.9	298.9
C6	C5	C4	O4	182.5	183.2
C4	C5	C6	O5	238.2	240.1
C6	C5	C4	H4	63.2	62.9
C4	C5	C6	H5	119.2	119.9
O5	C5	C6	H5	241.0	239.8
C6	C5	O5	HO5	18.8	180.3
C7	C6	C5	O6	120.4	120.0
C5	C6	C7	C8	181.0	185.0
C5	C6	C7	O7	301.3	305.0
C7	C6	C5	H6	242.0	240.0
C5	C6	C7	H7	60.1	65.0
O6	C6	C5	H6	121.6	120.0
O5	C5	C4	O4	61.1	63.3
C4	C5	O5	C6	121.2	119.7
O5	C5	C4	H4	301.8	302.9
C4	C5	O5	H5	240.8	239.9
O5	C5	C6	C7	297.9	297.5
O5	C5	C6	O6	177.5	177.5
C6	C5	O5	H5	119.6	120.2
O5	C5	C6	H6	55.9	57.5
C2	O6	C6	C7	176.9	178.9
C7	C6	C5	O5	297.9	297.5
C5	C6	C7	O6	238.1	240.0
C7	C6	C5	H5	56.8	57.7
C5	C6	C7	H6	116.3	120.0
O6	C6	C7	H6	238.2	240.0
C8	C7	C6	O7	239.7	240.0
C6	C7	C8	O8	304.7	300.0
C6	C7	C8	C9	180.8	180.0
C8	C7	C6	H7	121.0	120.0
C6	C7	C8	H8	62.7	60.0
O7	C7	C6	H7	241.2	240.0
C6	C7	O7	HO7	340.3	300.0
C6	O6	C2	O2	297.1	301.2
O6	C6	C5	O5	177.5	177.5
C5	C6	O6	C7	125.0	120.0
O6	C6	C5	H5	296.5	297.7
C5	C6	O6	H6	243.4	240.0
O6	C6	C7	C8	302.9	305.0
O6	C6	C7	O7	63.2	64.9
C7	C6	O6	H6	118.4	120.0
O6	C6	C7	H7	182.0	185.0
C8	C7	C6	O6	302.9	305.0
C6	C7	C8	O7	122.5	120.0
C8	C7	C6	H6	64.7	65.0
C6	C7	C8	H7	241.3	240.0
O7	C7	C8	H7	118.9	120.0
C8	C7	O7	HO7	100.8	60.0
C9	C8	C7	O8	236.1	240.0
O8	C8	C7	H8	242.0	240.0
C7	C8	O8	HO8	257.9	300.0
C9	C8	C7	H8	118.1	120.0
C7	C8	C9	H91	177.7	305.0
C7	C8	C9	H92	298.3	65.0
O7	C7	C6	O6	63.2	64.9
C6	C7	O7	C8	239.6	240.0
O7	C7	C6	H6	184.9	185.0
C6	C7	O7	H7	118.6	120.0
O7	C7	C8	O8	182.2	180.0
O7	C7	C8	C9	58.4	60.0
C8	C7	O7	H7	239.0	240.0
O7	C7	C8	H8	300.2	300.0
O8	C8	C7	O7	182.2	180.0
C7	C8	O8	C9	236.5	240.0
O8	C8	C7	H7	63.4	60.0
C7	C8	O8	H8	118.4	120.0
C9	C8	O8	H8	241.9	240.0
O8	C8	C9	H91	54.1	185.0
O8	C8	C9	H92	174.8	305.0
C9	C8	C7	O7	58.4	60.0
C7	C8	C9	O8	123.6	120.0
C9	C8	C7	H7	299.5	300.0
C7	C8	C9	H8	241.6	240.0
O8	C8	C9	H8	118.0	120.0
C9	C8	O8	HO8	21.4	60.0
O9	C9	C8	H91	240.0	240.0
O9	C9	C8	H92	119.4	120.0
H91	C9	C8	H92	239.4	240.0
O1B	C1	C2	O2	187.2	65.0
O1B	C1	C2	O6	306.1	185.0
O1A	C1	C2	O2	3.7	245.0
O1A	C1	C2	O6	122.7	5.0
O9	C9	C8	H8	176.1	305.0
C8	C9	O9	H91	120.0	120.0
C8	C9	O9	H92	240.7	240.0
H91	C9	O9	H92	120.7	120.0
H31	C3	C2	O2	185.8	182.3
H31	C3	C2	O6	62.1	62.3
C2	C3	H31	C4	240.9	240.3
C2	C3	H31	H32	120.4	120.2
H31	C3	C4	C5	296.5	297.1
H31	C3	C4	O4	56.6	56.9
C4	C3	H31	H32	239.5	239.9
H31	C3	C4	H4	175.9	177.2
H32	C3	C2	O2	305.3	302.4
H32	C3	C2	O6	181.7	182.5
C2	C3	H32	C4	119.4	119.7
C2	C3	H32	H31	239.7	239.8
H32	C3	C4	C5	177.0	176.9
H32	C3	C4	O4	297.0	296.8
C4	C3	H32	H31	120.3	120.1
H32	C3	C4	H4	56.3	57.1
C3	C4	H4	C5	119.3	119.5
C3	C4	H4	O4	239.4	239.8
H4	C4	C3	H31	175.9	177.2
H4	C4	C3	H32	56.3	57.1
C5	C4	H4	O4	120.1	120.3
H4	C4	C5	C6	63.2	62.9
H4	C4	C5	O5	301.8	302.9
H4	C4	C5	H5	182.8	182.8
H4	C4	O4	HO4	50.3	299.8
H5	C5	C4	O4	302.1	303.1
C4	C5	H5	C6	240.3	240.3
C4	C5	H5	O5	120.3	120.1
H5	C5	C4	H4	182.8	182.8
C6	C5	H5	O5	240.1	239.8
H5	C5	C6	C7	56.8	57.7
H5	C5	C6	O6	296.5	297.7
H5	C5	C6	H6	174.9	177.7
H5	C5	O5	HO5	259.2	60.1
HO4	O4	C4	H4	50.3	299.8
H6	C6	C5	O5	55.9	57.5
C5	C6	H6	C7	237.3	240.0
C5	C6	H6	O6	119.4	120.0
H6	C6	C5	H5	174.9	177.7
C7	C6	H6	O6	242.1	240.0
H6	C6	C7	C8	64.7	65.0
H6	C6	C7	O7	184.9	185.0
H6	C6	C7	H7	303.7	305.0
HO5	O5	C5	H5	259.2	60.1
H7	C7	C6	O6	182.0	185.0
C6	C7	H7	C8	119.4	120.0
C6	C7	H7	O7	238.6	240.0
H7	C7	C6	H6	303.7	305.0
C8	C7	H7	O7	119.2	120.0
H7	C7	C8	O8	63.4	60.0
H7	C7	C8	C9	299.5	300.0
H7	C7	C8	H8	181.4	180.0
H7	C7	O7	HO7	221.7	180.0
H8	C8	C7	O7	300.2	300.0
C7	C8	H8	O8	240.1	240.0
C7	C8	H8	C9	119.9	120.0
H8	C8	C7	H7	181.4	180.0
C9	C8	H8	O8	120.2	120.0
H8	C8	O8	HO8	139.5	180.0
H8	C8	C9	H91	296.1	65.0
H8	C8	C9	H92	56.8	185.0
HO7	O7	C7	H7	221.7	180.0
HO8	O8	C8	H8	139.5	180.0
H91	C9	C8	O8	54.1	185.0
H91	C9	C8	H8	296.1	65.0
C8	C9	H91	H92	119.4	120.0
O9	C9	H91	H92	240.6	240.0
H92	C9	C8	O8	174.8	305.0
H92	C9	C8	H8	56.8	185.0
C8	C9	H92	H91	240.4	240.0
O9	C9	H92	H91	119.6	120.1
HO9	O9	C9	H91	26.3	60.0
HO9	O9	C9	H92	265.7	299.9