Atom Nomenclature for KDH

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for KDH

Atom Name (V3) Atom Name (V2)
O1 O1
C3 C3
C6 C6
O7 O7
C9 C9
O10 O10
C12 C12
C14 C14
C15 C15
C20 C20
C21 C21
C24 C24
C26 C26
C29 C29
C31 C31
C33 C33
C36 C36
C38 C38
C39 C39
C41 C41
C01 C01
O01 O01
O02 O02
O03 O03
C4 C4
O35 O35
O37 O37
C43 C43
O44 O44
C46 C46
O47 O47
C49 C49
O50 O50
HO1 HO1
H21 H21
H33 H33
H4 H4
HO7 HO7
H01 H01
H01A H01A
HO03 HO03
HO10 HO10
H12 H12
H15 H15
H26 H26
H39 H39
H41 H41
HO02 HO02
HO44 HO44
HO47 HO47
HO50 HO50