PDB Chemical Component KDB

Ideal Model

Chemical Description

Name 3,4,5-trideoxy-alpha-D-erythro-oct-3-en-2-ulopyranosonic acid
Synonyms 3,4-dehydro-3,4,5-trideoxy-alpha-D-manno-oct-2-ulosonic acid; 3,4,5-trideoxy-alpha-D-erythro-oct-3-en-2-ulosonic acid; 3,4,5-trideoxy-D-erythro-oct-3-en-2-ulosonic acid; 3,4,5-trideoxy-erythro-oct-3-en-2-ulosonic acid
Formula C8 H12 O6
Formal charge 0
Molecular weight 204.177 g/mol
Component type D-saccharide, alpha linking

Chemical features

Atom count 26
Chiral atom count 3
Chiral atoms C2 C6 C7
Observed leaving atoms O2 HO2
Bond count 26
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) 3,4,5-trideoxy-alpha-D-erythro-oct-3-en-2-ulopyranosonic acid
Systematic name (OpenEye OEToolkits) (2~{S},6~{R})-2-[(1~{R})-1,2-bis(oxidanyl)ethyl]-6-oxidanyl-2,3-dihydropyran-6-carboxylic acid

Chemical Descriptors

Stereo SMILES (CACTVS) OC[C@@H](O)[C@@H]1CC=C[C@@](O)(O1)C(O)=O
SMILES (CACTVS) OC[CH](O)[CH]1CC=C[C](O)(O1)C(O)=O
Stereo SMILES (OpenEye) C1C=C[C@@](O[C@@H]1[C@@H](CO)O)(C(=O)O)O
InChI descriptor InChI=1S/C8H12O6/c9-4-5(10)6-2-1-3-8(13,14-6)7(11)12/h1,3,5-6,9-10,13H,2,4H2,(H,11,12)/t5-,6+,8-/m1/s1
InChIKey descriptor ITFIFEKDEVIBCW-GKROBHDKSA-N

Status Information

Last modified 2020-07-17
Created 2008-01-04
Release status REL
Model PDB code 2R1W
Processing site RCSB