PDB Chemical Component KD5
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for KD5
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
O8 |
C8 |
1.412 |
1.430 |
C8 |
C7 |
1.525 |
1.531 |
C7 |
C6 |
1.515 |
1.550 |
C7 |
O7 |
1.458 |
1.446 |
C6 |
O6 |
1.435 |
1.429 |
C6 |
C5 |
1.530 |
1.548 |
O5 |
C5 |
1.381 |
1.428 |
O7 |
C4 |
1.433 |
1.438 |
C5 |
C4 |
1.526 |
1.541 |
O5 |
HO5 |
0.950 |
0.967 |
C4 |
H4 |
1.100 |
1.089 |
C5 |
H5 |
1.100 |
1.090 |
C6 |
H6 |
1.100 |
1.090 |
O6 |
HO6 |
0.950 |
0.967 |
C7 |
H7 |
1.100 |
1.090 |
O8 |
HO8 |
0.950 |
0.966 |
C8 |
H81 |
1.100 |
1.089 |
C8 |
H82 |
1.100 |
1.090 |
C4 |
C3 |
|
1.531 |
C3 |
C2 |
|
1.507 |
C2 |
C1 |
|
1.491 |
C2 |
O2 |
|
1.208 |
C1 |
O1B |
|
1.345 |
C1 |
O1A |
|
1.213 |
C3 |
H31 |
|
1.090 |
C3 |
H32 |
|
1.090 |
O1B |
HO1B |
|
0.967 |
Bond Angles for KD5
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C8 |
O8 |
HO8 |
109.5 |
114.0 |
O8 |
C8 |
H81 |
108.7 |
109.5 |
O8 |
C8 |
H82 |
108.7 |
109.5 |
C8 |
C7 |
H7 |
109.1 |
110.6 |
C7 |
C6 |
H6 |
108.9 |
111.0 |
O7 |
C7 |
H7 |
110.0 |
110.5 |
O6 |
C6 |
H6 |
110.0 |
110.8 |
C6 |
O6 |
HO6 |
109.5 |
114.1 |
C6 |
C5 |
H5 |
105.3 |
110.6 |
O5 |
C5 |
C4 |
124.2 |
110.5 |
C5 |
O5 |
HO5 |
109.5 |
114.0 |
O5 |
C5 |
H5 |
107.0 |
110.5 |
O7 |
C4 |
H4 |
114.1 |
109.9 |
O7 |
C4 |
C3 |
|
109.8 |
C5 |
C4 |
H4 |
112.5 |
109.9 |
C5 |
C4 |
C3 |
|
109.9 |
H4 |
C4 |
C3 |
|
109.9 |
H81 |
C8 |
H82 |
109.5 |
109.5 |
C4 |
C3 |
C2 |
|
109.5 |
C4 |
C3 |
H31 |
|
109.4 |
C4 |
C3 |
H32 |
|
109.5 |
C3 |
C2 |
C1 |
|
120.0 |
C3 |
C2 |
O2 |
|
120.0 |
C2 |
C3 |
H31 |
|
109.5 |
C2 |
C3 |
H32 |
|
109.5 |
C1 |
C2 |
O2 |
|
120.0 |
C2 |
C1 |
O1B |
|
120.0 |
C2 |
C1 |
O1A |
|
120.0 |
O1B |
C1 |
O1A |
|
120.0 |
C1 |
O1B |
HO1B |
|
117.0 |
H31 |
C3 |
H32 |
|
109.5 |
Torsion Angles for KD5
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
O8 |
C8 |
C7 |
H7 |
174.6 |
307.9 |
H81 |
C8 |
O8 |
H82 |
240.9 |
120.0 |
C8 |
C7 |
C6 |
H6 |
351.8 |
322.7 |
O7 |
C7 |
C8 |
H7 |
123.4 |
122.9 |
O6 |
C6 |
C7 |
H6 |
122.6 |
123.6 |
C7 |
C6 |
O6 |
HO6 |
180.0 |
292.7 |
C7 |
C6 |
C5 |
H5 |
220.3 |
262.2 |
C8 |
C7 |
O7 |
H7 |
237.1 |
237.1 |
O7 |
C7 |
C6 |
H6 |
114.5 |
81.3 |
C7 |
O7 |
C4 |
H4 |
196.7 |
214.2 |
C7 |
O7 |
C4 |
C3 |
|
93.2 |
C7 |
C6 |
O6 |
H6 |
238.0 |
236.3 |
O6 |
C6 |
C5 |
H5 |
341.9 |
20.3 |
C6 |
C5 |
O5 |
HO5 |
180.0 |
65.2 |
O5 |
C5 |
C6 |
H5 |
246.1 |
237.4 |
C6 |
C5 |
C4 |
H4 |
164.8 |
121.4 |
C6 |
C5 |
C4 |
C3 |
|
242.5 |
C6 |
C5 |
O5 |
H5 |
112.7 |
122.6 |
O5 |
C5 |
C4 |
H4 |
39.6 |
2.8 |
O5 |
C5 |
C4 |
C3 |
|
123.8 |
C5 |
C4 |
O7 |
H4 |
118.3 |
119.5 |
C5 |
C4 |
O7 |
C3 |
|
240.5 |
H4 |
C4 |
O7 |
C3 |
|
121.0 |
O7 |
C4 |
C3 |
C2 |
|
66.7 |
O7 |
C4 |
C3 |
H31 |
|
186.7 |
O7 |
C4 |
C3 |
H32 |
|
306.7 |
C4 |
C5 |
O5 |
HO5 |
304.5 |
180.0 |
O5 |
C5 |
C4 |
H5 |
123.5 |
122.6 |
O7 |
C4 |
C5 |
H4 |
240.5 |
240.5 |
O7 |
C4 |
C5 |
C3 |
|
119.5 |
H4 |
C4 |
C5 |
C3 |
|
239.0 |
C5 |
C4 |
C3 |
C2 |
|
184.7 |
C5 |
C4 |
C3 |
H31 |
|
304.7 |
C5 |
C4 |
C3 |
H32 |
|
64.6 |
HO5 |
O5 |
C5 |
C4 |
304.5 |
180.0 |
HO5 |
O5 |
C5 |
H5 |
67.3 |
302.6 |
O7 |
C4 |
H4 |
C3 |
|
239.0 |
C5 |
C4 |
H4 |
C3 |
|
121.0 |
H4 |
C4 |
C3 |
C2 |
|
305.8 |
H4 |
C4 |
C3 |
H31 |
|
65.7 |
H4 |
C4 |
C3 |
H32 |
|
185.7 |
O5 |
C5 |
H5 |
C4 |
226.2 |
237.4 |
H5 |
C5 |
O5 |
HO5 |
67.3 |
302.6 |
H5 |
C5 |
C4 |
H4 |
276.1 |
240.2 |
H5 |
C5 |
C4 |
C3 |
|
1.2 |
H6 |
C6 |
O6 |
HO6 |
301.9 |
56.3 |
H6 |
C6 |
C5 |
H5 |
106.2 |
143.9 |
HO6 |
O6 |
C6 |
H6 |
301.9 |
56.3 |
H7 |
C7 |
C6 |
H6 |
233.6 |
199.7 |
HO8 |
O8 |
C8 |
H81 |
300.4 |
60.1 |
HO8 |
O8 |
C8 |
H82 |
59.6 |
300.0 |
H81 |
C8 |
O8 |
HO8 |
300.4 |
60.1 |
O8 |
C8 |
H81 |
H82 |
118.7 |
240.0 |
H81 |
C8 |
C7 |
H7 |
54.2 |
68.0 |
H82 |
C8 |
O8 |
HO8 |
59.6 |
300.0 |
O8 |
C8 |
H82 |
H81 |
241.4 |
120.0 |
H82 |
C8 |
C7 |
H7 |
295.1 |
187.9 |
O7 |
C4 |
C3 |
H4 |
|
121.0 |
C5 |
C4 |
C3 |
H4 |
|
239.0 |
C4 |
C3 |
C2 |
C1 |
|
180.0 |
C4 |
C3 |
C2 |
O2 |
|
359.9 |
C2 |
C3 |
C4 |
H31 |
|
240.0 |
C2 |
C3 |
C4 |
H32 |
|
120.1 |
H31 |
C3 |
C4 |
H32 |
|
240.1 |
C4 |
C3 |
C2 |
H31 |
|
120.0 |
C4 |
C3 |
C2 |
H32 |
|
240.0 |
C1 |
C2 |
C3 |
O2 |
|
180.1 |
C3 |
C2 |
C1 |
O1B |
|
179.9 |
C3 |
C2 |
C1 |
O1A |
|
360.0 |
H31 |
C3 |
C2 |
H32 |
|
120.0 |
C3 |
C2 |
C1 |
O2 |
|
179.9 |
C1 |
C2 |
C3 |
H31 |
|
60.0 |
C1 |
C2 |
C3 |
H32 |
|
300.0 |
O1B |
C1 |
C2 |
O1A |
|
180.0 |
C2 |
C1 |
O1B |
HO1B |
|
180.0 |
C3 |
C2 |
O2 |
C1 |
|
180.1 |
O2 |
C2 |
C3 |
H31 |
|
240.0 |
O2 |
C2 |
C3 |
H32 |
|
119.9 |
O2 |
C2 |
C1 |
O1B |
|
0.0 |
O2 |
C2 |
C1 |
O1A |
|
180.0 |
O1B |
C1 |
C2 |
O2 |
|
0.0 |
C2 |
C1 |
O1B |
O1A |
|
180.0 |
O1A |
C1 |
C2 |
O2 |
|
180.0 |
C2 |
C1 |
O1A |
O1B |
|
180.0 |
O1A |
C1 |
O1B |
HO1B |
|
359.9 |
C4 |
C3 |
H31 |
C2 |
|
240.0 |
C4 |
C3 |
H31 |
H32 |
|
119.9 |
H31 |
C3 |
C2 |
C1 |
|
60.0 |
H31 |
C3 |
C2 |
O2 |
|
240.0 |
C2 |
C3 |
H31 |
H32 |
|
239.9 |
C4 |
C3 |
H32 |
C2 |
|
120.0 |
C4 |
C3 |
H32 |
H31 |
|
240.1 |
H32 |
C3 |
C2 |
C1 |
|
300.0 |
H32 |
C3 |
C2 |
O2 |
|
119.9 |
C2 |
C3 |
H32 |
H31 |
|
120.1 |
HO1B |
O1B |
C1 |
O1A |
|
359.9 |