PDB Chemical Component KD2

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for KD2

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
OBC PAZ 1.388 1.480
OAY PAZ 1.504 1.610
OAY CAX 1.403 1.429
PAZ OBB 1.378 1.610
PAZ OBA 1.408 1.610
CAV CAU 1.541 1.530
CAV OAW 1.297 1.429
CAU CAX 1.506 1.531
CAU OAT 1.426 1.429
CAX CBD 1.541 1.532
CBD OBE 1.392 1.429
CBD CBF 1.505 1.532
OAT CAS 1.419 1.429
CAS CBF 1.514 1.531
CAS O6 1.383 1.429
CBF NBG 1.455 1.465
NBG CBH 1.310 1.347
CBI CBH 1.505 1.506
CBH OBJ 1.204 1.213
O6 C6 1.405 1.429
C6 C5 1.515 1.530
C5 O5 1.395 1.429
C5 C4 1.550 1.531
O4 C4 1.392 1.429
O5 C1 1.396 1.429
C4 C3 1.534 1.532
OAD PAB 1.384 1.480
C1 O1 1.450 1.429
C1 C2 1.564 1.531
C3 C2 1.512 1.532
C3 O3 1.416 1.429
O1 PAB 1.550 1.610
C2 N2 1.448 1.465
PAB OAA 1.385 1.610
PAB OAC 1.387 1.610
N2 CAJ 1.322 1.348
OBK CAJ 1.217 1.213
CAJ CAK 1.505 1.508
C1 H1 1.100 1.090
C2 H2 1.100 1.090
C3 H3 1.100 1.090
O3 H4 0.950 0.967
C4 H5 1.100 1.090
O4 H6 0.950 0.967
C5 H7 1.100 1.090
C6 H8 1.100 1.091
C6 H9 1.100 1.090
OAA H10 0.950 0.967
OAC H11 0.950 0.968
N2 H12 1.000 0.970
CAK H13 1.100 1.090
CAK H14 1.100 1.090
CAK H15 1.100 1.090
CAS H16 1.100 1.090
CAU H17 1.100 1.090
CAV H18 1.100 1.090
CAV H19 1.100 1.089
OAW H20 0.950 0.967
CAX H21 1.100 1.090
OBB H22 0.950 0.966
OBA H23 0.949 0.967
CBD H24 1.100 1.090
OBE H25 0.950 0.967
CBF H26 1.100 1.090
NBG H27 1.000 0.970
CBI H28 1.100 1.090
CBI H29 1.100 1.091
CBI H30 1.100 1.090

Bond Angles for KD2

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
OBC PAZ OBA 116.2 109.5
OAY PAZ OBB 108.4 109.5
OAY PAZ OBA 103.2 109.5
OAY CAX CBD 112.8 109.5
OAY CAX H21 108.6 109.6
OBB PAZ OBA 114.5 109.5
PAZ OBB H22 109.5 114.0
PAZ OBA H23 109.5 114.0
CAV CAU CAX 103.5 109.5
CAV CAU H17 108.0 109.5
OAW CAV H18 108.7 109.4
OAW CAV H19 108.7 109.5
CAV OAW H20 109.5 114.0
CAU CAX CBD 112.3 109.1
CAX CAU H17 108.5 109.5
CAU CAX H21 107.3 109.5
CAX CBD OBE 110.7 109.5
CAX CBD CBF 109.8 109.1
CBD CAX H21 106.9 109.5
CAX CBD H24 108.0 109.5
OBE CBD CBF 109.8 109.6
OBE CBD H24 110.0 109.5
CBD OBE H25 109.5 114.0
CAS CBF CBD 111.9 109.2
CBD CBF NBG 110.6 109.6
CBF CBD H24 108.4 109.6
CBD CBF H26 109.1 109.5
OAT CAS CBF 113.6 109.4
OAT CAS H16 108.9 109.5
CAS CBF NBG 106.4 109.5
CBF CAS H16 107.6 109.5
CAS CBF H26 109.0 109.5
CBF NBG CBH 121.9 120.0
NBG CBF H26 109.8 109.6
CBF NBG H27 119.1 120.0
NBG CBH OBJ 124.9 120.0
CBH NBG H27 119.0 120.0
O6 C6 H8 109.1 109.5
O6 C6 H9 109.1 109.5
C6 C5 H7 108.4 109.5
O5 C5 H7 110.1 109.5
C5 C4 H5 107.7 109.5
O4 C4 H5 109.9 109.5
O5 C1 H1 108.5 109.5
C4 C3 H3 108.6 109.6
O1 C1 C2 111.9 109.4
C1 O1 PAB 127.1 123.0
O1 C1 H1 107.8 109.4
C1 C2 N2 109.3 109.5
C2 C1 H1 106.4 109.5
C1 C2 H2 107.4 109.5
C3 C2 N2 111.0 109.6
C3 C2 H2 108.0 109.5
O3 C3 H3 110.2 109.5
C3 O3 H4 109.5 114.0
O1 PAB OAA 98.9 109.5
O1 PAB OAC 102.8 109.5
C2 N2 CAJ 120.3 120.0
N2 C2 H2 108.9 109.6
C2 N2 H12 119.8 120.0
PAB OAA H10 109.5 114.0
PAB OAC H11 109.5 114.0
N2 CAJ CAK 115.8 120.0
CAJ N2 H12 119.9 120.0
OBK CAJ CAK 119.8 120.0
CAJ CAK H13 109.5 109.4
CAJ CAK H14 109.5 109.4
CAJ CAK H15 109.5 109.4
H8 C6 H9 109.4 109.5
H13 CAK H14 109.5 109.6
H13 CAK H15 109.5 109.5
H14 CAK H15 109.4 109.5
H18 CAV H19 109.5 109.5
H28 CBI H29 109.4 109.4
H28 CBI H30 109.4 109.4
H29 CBI H30 109.5 109.5

Torsion Angles for KD2

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
OAY PAZ OBC OBA 109.6 120.0
OBB PAZ OBC OBA 224.3 240.0
OBC PAZ OBB H22 360.0 179.9
OBC PAZ OBA H23 0.0 300.0
OBC PAZ OAY OBA 240.3 240.0
PAZ OAY CAX CBD 117.8 120.3
PAZ OAY CAX H21 359.5 0.1
OBB PAZ OAY OBA 121.8 120.0
OAY PAZ OBB H22 108.9 300.0
OAY PAZ OBA H23 252.9 180.0
CAU CAX OAY CBD 125.2 119.7
OAY CAX CAU H17 305.7 302.5
CAU CAX OAY H21 243.6 239.8
OAY CAX CBD OBE 298.9 296.8
OAY CAX CBD CBF 177.4 176.9
CBD CAX OAY H21 118.3 120.2
OAY CAX CBD H24 59.3 56.9
OBC PAZ OBB OBA 136.5 120.0
OAY PAZ OBB OBA 245.4 240.0
OBB PAZ OBA H23 135.3 60.0
OAY PAZ OBA OBB 117.6 120.0
OBA PAZ OBB H22 223.5 59.9
CAV CAU CAX CBD 185.7 182.4
CAX CAU CAV H17 245.1 239.9
CAV CAU CAX H21 302.9 302.4
OAW CAV CAU CAX 150.1 185.0
OAW CAV CAU H17 265.0 305.1
H18 CAV OAW H19 119.1 120.0
OAY CAX CAU CBD 234.5 240.1
OAY CAX CAU H21 117.3 120.2
CAV CAU CAX H17 114.6 120.1
CAU CAX CBD OBE 175.6 176.9
CAU CAX CBD CBF 54.1 57.0
CBD CAX CAU H21 242.8 240.1
CAU CAX CBD H24 296.0 297.0
CAU OAT CAS CBF 314.1 298.9
CAU OAT CAS H16 74.1 58.8
OAY CAX CBD H21 240.7 239.8
CBD CAX CAU H17 71.2 62.4
CAU CAX CBD H21 117.4 119.9
OBE CBD CAX CBF 121.4 119.9
OBE CBD CAX H24 239.5 239.9
CAX CBD OBE H25 180.0 60.0
CAS CBF CBD CAX 307.7 303.0
CAX CBD CBF NBG 189.3 183.1
CBF CBD CAX H24 118.1 120.0
CAX CBD CBF H26 68.4 62.9
CAX CBD OBE CBF 238.5 240.4
OBE CBD CAX H21 58.2 57.0
CAX CBD OBE H24 119.3 120.1
CAS CBF CBD OBE 185.7 183.1
OBE CBD CBF NBG 67.3 63.2
CBF CBD OBE H24 240.7 239.8
OBE CBD CBF H26 306.4 303.0
CAX CBD CBF OBE 122.0 119.9
CBF CBD CAX H21 296.7 297.1
CAX CBD CBF H24 242.2 240.1
OBE CBD CBF H24 120.2 120.2
CBF CBD OBE H25 301.5 179.6
OAT CAS CBF CBD 47.8 57.5
CAS CBF CBD NBG 118.4 119.9
CBD CBF CAS H16 287.2 297.6
CAS CBF CBD H26 239.3 240.2
CBD CBF NBG CBH 229.6 204.7
NBG CBF CBD H26 120.9 120.2
CBD CBF NBG H27 49.6 24.7
OAT CAS CBF NBG 168.8 177.5
CBF CAS OAT H16 240.1 240.1
OAT CAS CBF H26 287.1 297.7
CAX CBD CBF CAS 307.7 303.0
OBE CBD CBF CAS 185.7 183.1
CBD CBF CAS NBG 239.1 240.0
CAS CBF CBD H24 65.5 63.0
CBD CBF CAS H26 120.7 119.8
OAT CAS CBF H16 120.7 120.0
CAS CBF NBG CBH 107.9 84.9
NBG CBF CAS H26 241.7 239.8
CAS CBF NBG H27 287.9 265.0
CAS O6 C6 H8 284.2 60.0
CAS O6 C6 H9 43.7 300.0
CAS CBF NBG CBD 238.3 240.3
NBG CBF CBD H24 307.1 303.0
CBD CBF NBG H26 239.5 239.9
NBG CBF CAS H16 48.1 57.5
CAS CBF NBG H26 117.8 120.1
CBF NBG CBH OBJ 4.2 0.1
CBH NBG CBF H27 180.0 180.0
CBH NBG CBF H26 350.1 324.8
CBF NBG CBH H27 180.0 180.0
CBI CBH NBG H27 3.3 359.9
OBJ CBH NBG H27 184.2 180.0
O6 C6 C5 H7 173.2 305.0
H8 C6 O6 H9 240.5 120.0
O5 C5 C6 H7 118.5 120.0
C6 C5 C4 H5 311.1 302.3
C6 C5 O5 H7 242.6 240.0
O5 C5 C4 H5 70.7 62.3
C5 O5 C1 H1 186.4 178.9
O4 C4 C5 H5 119.6 120.2
C5 C4 C3 H3 290.2 297.0
C5 C4 O4 H5 241.7 239.9
O4 C4 C3 H3 52.1 57.0
O5 C1 O1 PAB 98.4 90.0
O1 C1 O5 H1 240.9 240.0
O5 C1 C2 N2 181.6 177.5
C2 C1 O5 H1 115.8 120.0
O5 C1 C2 H2 299.6 297.6
C4 C3 C2 N2 184.1 183.1
C4 C3 C2 H2 64.8 62.9
O3 C3 C4 H3 238.9 239.9
C4 C3 O3 H4 180.0 60.5
OAD PAB OAA H10 0.0 300.0
OAD PAB OAC H11 360.0 180.0
O5 C1 O1 H1 119.6 120.1
O1 C1 C2 N2 56.2 57.5
C2 C1 O1 H1 243.3 240.0
O1 C1 C2 H2 174.1 177.7
C1 O1 PAB OAA 25.0 175.0
C1 O1 PAB OAC 146.3 295.0
O5 C1 C2 H1 242.9 239.9
C2 C1 O1 PAB 222.2 210.0
O1 C1 C2 H1 117.5 120.0
C3 C2 C1 N2 236.5 240.0
C3 C2 C1 H2 118.5 119.9
C1 C2 N2 CAJ 110.6 85.0
N2 C2 C1 H2 242.0 239.8
C1 C2 N2 H12 290.7 264.9
C1 C2 C3 N2 122.5 119.9
C3 C2 C1 H1 175.2 177.6
C1 C2 C3 H2 241.8 240.2
C3 C2 N2 CAJ 234.8 204.7
N2 C2 C3 H2 119.3 120.2
C3 C2 N2 H12 54.8 24.6
C4 C3 O3 H3 120.1 120.2
O3 C3 C2 N2 63.0 63.2
O3 C3 C2 H2 303.7 303.0
PAB O1 C1 C2 222.2 210.0
PAB O1 C1 H1 338.9 330.0
O1 PAB OAA H10 253.9 180.0
O1 PAB OAC H11 107.3 300.0
N2 C2 C1 H1 298.7 297.6
C1 C2 N2 H2 117.1 120.1
C3 C2 N2 H2 241.2 239.8
C2 N2 CAJ CAK 181.6 180.0
CAJ N2 C2 H12 180.0 180.1
O1 PAB OAA OAC 109.7 120.0
O1 PAB OAC OAA 252.6 240.0
OAC PAB OAA H10 144.3 60.0
CAJ N2 C2 H2 353.6 324.9
C2 N2 CAJ H12 180.0 179.9
OBK CAJ N2 CAK 181.7 179.9
N2 CAJ CAK H13 181.6 59.9
N2 CAJ CAK H14 301.7 180.0
N2 CAJ CAK H15 61.6 299.9
N2 CAJ OBK CAK 178.2 180.1
OBK CAJ N2 H12 183.3 180.0
OBK CAJ CAK H13 360.0 240.0
OBK CAJ CAK H14 120.0 0.0
OBK CAJ CAK H15 240.0 120.0
CAK CAJ N2 H12 1.6 0.1
H13 CAK CAJ H14 239.9 239.9
H13 CAK CAJ H15 120.0 120.0
H14 CAK CAJ H15 240.0 240.0
O1 C1 H1 C2 239.8 240.0
H1 C1 O1 PAB 338.9 330.0
H1 C1 C2 N2 298.7 297.6
H1 C1 C2 H2 56.7 57.7
C1 C2 H2 N2 241.8 239.9
H2 C2 C1 H1 56.7 57.7
C3 C2 H2 N2 120.7 120.2
H2 C2 N2 CAJ 353.6 324.9
H2 C2 N2 H12 173.6 144.8
H3 C3 C2 N2 302.0 303.1
H3 C3 C2 H2 182.6 182.9
H3 C3 O3 H4 59.8 300.2
H4 O3 C3 H3 59.8 300.2
H5 C4 C3 H3 171.3 177.1
H6 O4 C4 H5 298.3 59.9
H7 C5 C4 H5 192.8 182.3
O6 C6 H8 H9 119.3 240.0
H8 C6 C5 H7 52.9 65.0
O6 C6 H9 H8 240.6 120.0
H9 C6 C5 H7 293.4 185.0
C2 N2 H12 CAJ 180.0 180.1
H12 N2 C2 H2 173.6 144.8
H12 N2 CAJ CAK 1.6 0.1
CAJ CAK H13 H14 120.0 120.0
CAJ CAK H13 H15 240.0 240.1
H14 CAK H13 H15 120.0 120.1
CAJ CAK H14 H13 240.0 240.0
CAJ CAK H14 H15 120.0 119.9
H13 CAK H14 H15 240.0 239.9
CAJ CAK H15 H13 120.0 119.9
CAJ CAK H15 H14 240.0 240.1
H13 CAK H15 H14 120.0 120.1
H16 CAS CBF CBD 287.2 297.6
OAT CAS H16 CBF 236.4 240.1
H16 CAS CBF NBG 48.1 57.5
H16 CAS CBF H26 166.4 177.8
CAV CAU H17 CAX 248.4 239.9
H17 CAU CAX CBD 71.2 62.4
H17 CAU CAX H21 188.4 182.3
H18 CAV CAU CAX 270.5 304.9
H18 CAV CAU H17 25.4 65.0
OAW CAV H18 H19 241.4 240.0
H18 CAV OAW H20 59.6 60.1
H19 CAV CAU CAX 29.6 65.0
H19 CAV CAU H17 144.5 185.1
OAW CAV H19 H18 118.6 119.9
H19 CAV OAW H20 300.5 300.1
H20 OAW CAV H18 59.6 60.1
H20 OAW CAV H19 300.5 300.1
OAY CAX H21 CBD 121.9 120.2
CAU CAX H21 CBD 239.3 240.3
H21 CAX CAU H17 188.4 182.3
H21 CAX CBD OBE 58.2 57.0
H21 CAX CBD CBF 296.7 297.1
H21 CAX CBD H24 178.6 177.1
H22 OBB PAZ OBA 223.5 59.9
CAX CBD H24 OBE 239.1 239.9
CAX CBD H24 CBF 119.0 119.6
H24 CBD CAX H21 178.6 177.1
OBE CBD H24 CBF 239.9 239.8
H24 CBD OBE H25 60.7 299.8
H24 CBD CBF NBG 307.1 303.0
H24 CBD CBF H26 186.2 182.8
H25 OBE CBD CBF 301.5 179.6
H25 OBE CBD H24 60.7 299.8
CAS CBF H26 CBD 122.4 119.6
CBD CBF H26 NBG 121.4 120.2
H26 CBF CBD H24 186.2 182.8
CAS CBF H26 NBG 243.8 239.8
H26 CBF CAS H16 166.4 177.8
H26 CBF NBG CBH 350.1 324.8
H26 CBF NBG H27 170.1 144.8
CBF NBG H27 CBH 180.0 180.0
H27 NBG CBF H26 170.1 144.8
H27 NBG CBH OBJ 184.2 180.0
H29 CBI H28 H30 120.0 119.9
H28 CBI H29 H30 240.0 240.1
H28 CBI H30 H29 120.0 119.9