PDB Chemical Component KBI
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for KBI
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N1 |
C1 |
1.350 |
1.326 |
| C1 |
N2 |
1.347 |
1.324 |
| C1 |
N6 |
1.337 |
1.386 |
| C21 |
F1 |
1.346 |
1.351 |
| C4 |
N1 |
1.325 |
1.324 |
| C10 |
O1 |
1.427 |
1.429 |
| O1 |
HO1 |
0.950 |
0.967 |
| C3 |
C2 |
1.388 |
1.410 |
| N3 |
C2 |
1.331 |
1.375 |
| C2 |
N2 |
1.344 |
1.325 |
| F2 |
C19 |
1.348 |
1.352 |
| C15 |
O2 |
1.439 |
1.444 |
| C14 |
O2 |
1.440 |
1.437 |
| N4 |
C3 |
1.341 |
1.358 |
| C4 |
C3 |
1.396 |
1.394 |
| F3 |
C17 |
1.347 |
1.351 |
| C5 |
N3 |
1.335 |
1.369 |
| N3 |
C13 |
1.471 |
1.465 |
| C4 |
H4 |
1.080 |
1.080 |
| N4 |
C5 |
1.339 |
1.310 |
| N5 |
C5 |
1.345 |
1.380 |
| C6 |
N5 |
1.345 |
1.402 |
| N5 |
HN5 |
1.000 |
0.970 |
| C17 |
C6 |
1.395 |
1.390 |
| C6 |
C21 |
1.397 |
1.390 |
| N6 |
C7 |
1.477 |
1.466 |
| N6 |
HN6 |
1.000 |
0.970 |
| C12 |
C7 |
1.538 |
1.530 |
| C7 |
C8 |
1.542 |
1.530 |
| C7 |
H7 |
1.100 |
1.090 |
| C8 |
C9 |
1.536 |
1.530 |
| C8 |
H8 |
1.100 |
1.090 |
| C8 |
H8A |
1.100 |
1.089 |
| C10 |
C9 |
1.533 |
1.530 |
| C9 |
H9 |
1.100 |
1.091 |
| C9 |
H9A |
1.100 |
1.090 |
| C11 |
C10 |
1.537 |
1.530 |
| C10 |
H10 |
1.100 |
1.089 |
| C12 |
C11 |
1.538 |
1.530 |
| C11 |
H11 |
1.100 |
1.090 |
| C11 |
H11A |
1.100 |
1.090 |
| C12 |
H12 |
1.100 |
1.090 |
| C12 |
H12A |
1.100 |
1.090 |
| C16 |
C13 |
1.527 |
1.549 |
| C13 |
C14 |
1.536 |
1.541 |
| C13 |
H13 |
1.100 |
1.090 |
| C14 |
H14 |
1.100 |
1.090 |
| C14 |
H14A |
1.100 |
1.090 |
| C16 |
C15 |
1.533 |
1.550 |
| C15 |
H15 |
1.100 |
1.090 |
| C15 |
H15A |
1.100 |
1.089 |
| C16 |
H16 |
1.100 |
1.090 |
| C16 |
H16A |
1.100 |
1.089 |
| C18 |
C17 |
1.395 |
1.384 |
| C18 |
C19 |
1.392 |
1.384 |
| C18 |
H18 |
1.080 |
1.080 |
| C19 |
C20 |
1.391 |
1.385 |
| C20 |
C21 |
1.393 |
1.384 |
| C20 |
H20 |
1.080 |
1.080 |
Bond Angles for KBI
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N1 |
C1 |
N2 |
120.6 |
122.1 |
| N1 |
C1 |
N6 |
119.5 |
118.9 |
| N2 |
C1 |
N6 |
120.0 |
118.9 |
| C1 |
N2 |
C2 |
120.6 |
120.4 |
| C1 |
N6 |
C7 |
122.2 |
120.0 |
| C1 |
N6 |
HN6 |
105.4 |
120.0 |
| C10 |
O1 |
HO1 |
109.5 |
113.9 |
| F2 |
C19 |
C18 |
120.6 |
119.9 |
| F2 |
C19 |
C20 |
120.0 |
119.9 |
| F3 |
C17 |
C6 |
120.5 |
120.0 |
| C5 |
N3 |
C13 |
124.9 |
126.3 |
| N3 |
C13 |
C14 |
108.1 |
110.5 |
| N3 |
C13 |
H13 |
107.2 |
110.4 |
| C6 |
N5 |
HN5 |
118.1 |
120.0 |
| C17 |
C6 |
C21 |
118.8 |
119.9 |
| C6 |
C21 |
C20 |
121.0 |
119.9 |
| C7 |
N6 |
HN6 |
105.5 |
120.0 |
| N6 |
C7 |
C8 |
109.5 |
109.4 |
| N6 |
C7 |
H7 |
109.5 |
109.4 |
| C12 |
C7 |
H7 |
109.0 |
109.5 |
| C8 |
C7 |
H7 |
109.2 |
109.5 |
| C7 |
C8 |
C9 |
112.0 |
109.4 |
| C7 |
C8 |
H8 |
108.6 |
109.4 |
| C7 |
C8 |
H8A |
108.7 |
109.5 |
| C9 |
C8 |
H8 |
108.7 |
109.5 |
| C9 |
C8 |
H8A |
108.7 |
109.5 |
| C8 |
C9 |
H9 |
109.0 |
109.5 |
| C8 |
C9 |
H9A |
109.0 |
109.5 |
| H8 |
C8 |
H8A |
110.3 |
109.5 |
| C10 |
C9 |
H9 |
109.0 |
109.4 |
| C10 |
C9 |
H9A |
109.0 |
109.5 |
| H9 |
C9 |
H9A |
109.9 |
109.4 |
| C11 |
C10 |
H10 |
109.2 |
109.5 |
| C12 |
C11 |
H11 |
109.1 |
109.5 |
| C12 |
C11 |
H11A |
109.1 |
109.5 |
| H11 |
C11 |
H11A |
109.9 |
109.5 |
| H12 |
C12 |
H12A |
110.2 |
109.5 |
| C16 |
C13 |
H13 |
110.8 |
110.6 |
| C14 |
C13 |
H13 |
114.5 |
110.5 |
| C13 |
C14 |
H14 |
110.6 |
109.8 |
| C13 |
C14 |
H14A |
110.6 |
109.8 |
| H14 |
C14 |
H14A |
108.3 |
110.0 |
| C16 |
C15 |
H15 |
111.4 |
110.6 |
| C16 |
C15 |
H15A |
111.4 |
110.8 |
| H15 |
C15 |
H15A |
107.4 |
110.6 |
| H16 |
C16 |
H16A |
107.4 |
110.8 |
| C19 |
C18 |
H18 |
119.7 |
120.0 |
| C18 |
C19 |
C20 |
119.4 |
120.1 |
| C19 |
C20 |
C21 |
120.0 |
120.0 |
| C19 |
C20 |
H20 |
120.0 |
120.0 |
| C21 |
C20 |
H20 |
120.0 |
119.9 |
Torsion Angles for KBI
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N2 |
C1 |
N1 |
N6 |
180.2 |
180.2 |
| N1 |
C1 |
N2 |
C2 |
360.0 |
359.8 |
| N1 |
C1 |
N6 |
C7 |
188.4 |
0.2 |
| N1 |
C1 |
N6 |
HN6 |
308.5 |
180.3 |
| N1 |
C1 |
N2 |
N6 |
179.8 |
179.8 |
| N2 |
C1 |
N6 |
C7 |
8.2 |
180.0 |
| N2 |
C1 |
N6 |
HN6 |
128.3 |
0.0 |
| N1 |
C1 |
N6 |
N2 |
180.2 |
180.2 |
| N6 |
C1 |
N2 |
C2 |
180.2 |
180.0 |
| C7 |
N6 |
C1 |
HN6 |
240.0 |
180.0 |
| C1 |
N6 |
C7 |
C8 |
263.9 |
205.0 |
| C1 |
N6 |
C7 |
H7 |
23.6 |
325.0 |
| C4 |
N1 |
C1 |
N6 |
179.9 |
179.7 |
| C2 |
N2 |
C1 |
N6 |
180.2 |
180.0 |
| F2 |
C19 |
C18 |
H18 |
359.9 |
360.0 |
| C18 |
C19 |
F2 |
C20 |
180.3 |
180.1 |
| F2 |
C19 |
C20 |
C21 |
180.4 |
179.7 |
| F2 |
C19 |
C20 |
H20 |
0.4 |
360.0 |
| F3 |
C17 |
C6 |
C21 |
180.5 |
180.2 |
| C5 |
N3 |
C13 |
C14 |
270.1 |
58.5 |
| C5 |
N3 |
C13 |
H13 |
34.0 |
181.1 |
| C16 |
C13 |
N3 |
H13 |
121.7 |
122.6 |
| C14 |
C13 |
N3 |
H13 |
236.1 |
237.4 |
| N3 |
C13 |
C14 |
H14 |
134.3 |
123.9 |
| N3 |
C13 |
C14 |
H14A |
14.3 |
2.8 |
| N4 |
C5 |
N3 |
C13 |
179.2 |
180.4 |
| N5 |
C5 |
N3 |
C13 |
358.1 |
0.2 |
| F3 |
C17 |
C6 |
N5 |
0.2 |
359.9 |
| C17 |
C6 |
N5 |
HN5 |
232.3 |
270.0 |
| C17 |
C6 |
C21 |
C20 |
359.6 |
359.4 |
| C21 |
C6 |
N5 |
HN5 |
52.0 |
89.7 |
| C19 |
C20 |
C21 |
C6 |
0.1 |
0.6 |
| C6 |
C21 |
C20 |
H20 |
180.1 |
180.3 |
| C1 |
N6 |
C7 |
HN6 |
120.0 |
180.0 |
| C12 |
C7 |
N6 |
H7 |
119.6 |
120.0 |
| C8 |
C7 |
N6 |
H7 |
240.3 |
240.0 |
| N6 |
C7 |
C8 |
C9 |
185.2 |
180.0 |
| N6 |
C7 |
C8 |
H8 |
305.2 |
300.0 |
| N6 |
C7 |
C8 |
H8A |
65.2 |
60.0 |
| C1 |
N6 |
HN6 |
C7 |
229.5 |
180.0 |
| HN6 |
N6 |
C7 |
C8 |
143.9 |
25.0 |
| HN6 |
N6 |
C7 |
H7 |
263.6 |
145.0 |
| C12 |
C7 |
N6 |
HN6 |
23.2 |
265.0 |
| N6 |
C7 |
C12 |
H7 |
240.1 |
240.0 |
| C8 |
C7 |
C12 |
H7 |
119.6 |
120.1 |
| C12 |
C7 |
C8 |
H8 |
65.7 |
59.9 |
| C12 |
C7 |
C8 |
H8A |
185.7 |
180.0 |
| C8 |
C7 |
N6 |
HN6 |
143.9 |
25.0 |
| N6 |
C7 |
C8 |
H7 |
119.9 |
119.9 |
| C12 |
C7 |
C8 |
H7 |
240.4 |
239.9 |
| C9 |
C8 |
C7 |
H8 |
240.0 |
240.1 |
| C9 |
C8 |
C7 |
H8A |
120.0 |
120.0 |
| C7 |
C8 |
C9 |
H9 |
177.0 |
180.0 |
| C7 |
C8 |
C9 |
H9A |
297.0 |
299.9 |
| H8 |
C8 |
C7 |
H8A |
240.0 |
239.9 |
| H7 |
C7 |
N6 |
HN6 |
263.6 |
145.0 |
| N6 |
C7 |
H7 |
C8 |
240.1 |
240.1 |
| H7 |
C7 |
C8 |
C9 |
65.3 |
60.1 |
| H7 |
C7 |
C8 |
H8 |
185.3 |
180.0 |
| H7 |
C7 |
C8 |
H8A |
305.3 |
300.1 |
| C9 |
C8 |
C7 |
H7 |
65.3 |
60.1 |
| C7 |
C8 |
C9 |
H8 |
120.0 |
119.9 |
| C7 |
C8 |
C9 |
H8A |
240.0 |
240.0 |
| H8 |
C8 |
C9 |
H8A |
120.0 |
120.1 |
| C10 |
C9 |
C8 |
H9 |
240.0 |
240.0 |
| C10 |
C9 |
C8 |
H9A |
120.0 |
120.0 |
| H9 |
C9 |
C8 |
H9A |
240.0 |
240.0 |
| H8 |
C8 |
C7 |
H7 |
185.3 |
180.0 |
| C7 |
C8 |
H8 |
C9 |
238.0 |
240.1 |
| C7 |
C8 |
H8 |
H8A |
119.0 |
120.1 |
| C9 |
C8 |
H8 |
H8A |
241.0 |
240.0 |
| H8 |
C8 |
C9 |
H9 |
57.0 |
60.1 |
| H8 |
C8 |
C9 |
H9A |
177.0 |
180.0 |
| H8A |
C8 |
C7 |
H7 |
305.3 |
300.1 |
| C7 |
C8 |
H8A |
C9 |
122.1 |
119.9 |
| C7 |
C8 |
H8A |
H8 |
241.0 |
240.0 |
| C9 |
C8 |
H8A |
H8 |
119.0 |
120.0 |
| H8A |
C8 |
C9 |
H9 |
297.0 |
300.0 |
| H8A |
C8 |
C9 |
H9A |
57.0 |
60.0 |
| C9 |
C10 |
O1 |
HO1 |
180.0 |
180.0 |
| C10 |
C9 |
C8 |
H8 |
297.0 |
300.1 |
| C10 |
C9 |
C8 |
H8A |
177.0 |
180.0 |
| C8 |
C9 |
C10 |
H9 |
120.0 |
120.0 |
| C8 |
C9 |
C10 |
H9A |
240.0 |
240.0 |
| H9 |
C9 |
C10 |
H9A |
120.0 |
119.9 |
| H9 |
C9 |
C8 |
H8 |
57.0 |
60.1 |
| H9 |
C9 |
C8 |
H8A |
297.0 |
300.0 |
| C8 |
C9 |
H9 |
H9A |
119.4 |
120.0 |
| C10 |
C9 |
H9 |
H9A |
240.5 |
240.1 |
| H9A |
C9 |
C8 |
H8 |
177.0 |
180.0 |
| H9A |
C9 |
C8 |
H8A |
57.0 |
60.0 |
| C8 |
C9 |
H9A |
H9 |
240.6 |
240.0 |
| C10 |
C9 |
H9A |
H9 |
119.5 |
119.9 |
| C11 |
C10 |
O1 |
HO1 |
59.9 |
60.0 |
| C11 |
C10 |
C9 |
H9 |
181.7 |
180.0 |
| C11 |
C10 |
C9 |
H9A |
61.7 |
60.0 |
| H10 |
C10 |
O1 |
HO1 |
300.2 |
299.9 |
| H10 |
C10 |
C9 |
H9 |
301.5 |
299.9 |
| H10 |
C10 |
C9 |
H9A |
181.5 |
180.0 |
| C11 |
C12 |
C7 |
H7 |
295.0 |
300.0 |
| C12 |
C11 |
C10 |
H10 |
298.6 |
300.0 |
| H11 |
C11 |
C12 |
H11A |
120.0 |
120.0 |
| H11 |
C11 |
C10 |
H10 |
58.6 |
60.0 |
| C12 |
C11 |
H11 |
H11A |
240.5 |
239.9 |
| H11A |
C11 |
C10 |
H10 |
178.6 |
180.0 |
| C12 |
C11 |
H11A |
H11 |
119.5 |
120.0 |
| H12 |
C12 |
C7 |
H7 |
54.9 |
59.9 |
| H12 |
C12 |
C11 |
H11 |
62.2 |
60.1 |
| H12 |
C12 |
C11 |
H11A |
302.2 |
300.0 |
| H12A |
C12 |
C7 |
H7 |
175.0 |
179.9 |
| H12A |
C12 |
C11 |
H11 |
302.2 |
300.1 |
| H12A |
C12 |
C11 |
H11A |
182.2 |
180.0 |
| N3 |
C13 |
C16 |
H13 |
240.4 |
237.4 |
| C14 |
C13 |
C16 |
H13 |
123.7 |
118.7 |
| C16 |
C13 |
C14 |
H14 |
253.6 |
242.6 |
| C16 |
C13 |
C14 |
H14A |
133.6 |
121.4 |
| N3 |
C13 |
C14 |
H13 |
119.4 |
122.6 |
| C16 |
C13 |
C14 |
H13 |
238.7 |
241.2 |
| H14 |
C14 |
C13 |
H14A |
120.0 |
121.2 |
| N3 |
C13 |
H13 |
C14 |
240.1 |
237.4 |
| H13 |
C13 |
C14 |
H14 |
14.9 |
1.4 |
| H13 |
C13 |
C14 |
H14A |
254.9 |
240.2 |
| H14 |
C14 |
C13 |
H13 |
14.9 |
1.4 |
| C13 |
C14 |
H14 |
H14A |
238.6 |
239.0 |
| H14A |
C14 |
C13 |
H13 |
254.9 |
240.2 |
| C13 |
C14 |
H14A |
H14 |
121.4 |
121.0 |
| C15 |
C16 |
C13 |
H13 |
247.8 |
262.1 |
| H15 |
C15 |
C16 |
H15A |
120.0 |
123.0 |
| C16 |
C15 |
H15 |
H15A |
237.7 |
236.9 |
| C16 |
C15 |
H15A |
H15 |
122.3 |
123.0 |
| H16 |
C16 |
C13 |
H13 |
7.8 |
20.3 |
| H16 |
C16 |
C15 |
H15 |
87.1 |
86.3 |
| H16 |
C16 |
C15 |
H15A |
327.2 |
323.3 |
| H16A |
C16 |
C13 |
H13 |
127.8 |
143.9 |
| H16A |
C16 |
C15 |
H15 |
327.1 |
322.8 |
| H16A |
C16 |
C15 |
H15A |
207.2 |
199.7 |
| F2 |
C19 |
C18 |
C17 |
179.9 |
180.0 |
| C18 |
C17 |
C6 |
C21 |
0.7 |
0.3 |
| F2 |
C19 |
C18 |
C20 |
179.7 |
179.9 |
| C18 |
C19 |
C20 |
C21 |
0.1 |
359.7 |
| C18 |
C19 |
C20 |
H20 |
180.0 |
179.9 |
| H18 |
C18 |
C19 |
C20 |
180.2 |
180.0 |
| F2 |
C19 |
C20 |
C18 |
180.3 |
180.1 |
| C6 |
C21 |
C20 |
C19 |
0.1 |
0.6 |
| C20 |
C19 |
C18 |
H18 |
180.2 |
180.0 |
| C21 |
C20 |
C19 |
H20 |
180.0 |
179.7 |
| C19 |
C20 |
C21 |
H20 |
180.0 |
180.3 |
| C19 |
C20 |
H20 |
C21 |
180.0 |
179.7 |