PDB Chemical Component KAI
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for KAI
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N |
CD |
1.515 |
1.485 |
| N |
CA |
1.442 |
1.479 |
| N |
HN1 |
1.000 |
1.009 |
| CD |
CG |
1.594 |
1.549 |
| CD |
HD1 |
1.100 |
1.090 |
| CD |
HD2 |
1.100 |
1.089 |
| CD1 |
CG2 |
1.281 |
1.310 |
| CD1 |
HD11 |
1.080 |
1.080 |
| CD1 |
HD12 |
1.080 |
1.080 |
| CD2 |
CG2 |
1.476 |
1.507 |
| CD2 |
HD21 |
1.100 |
1.090 |
| CD2 |
HD22 |
1.100 |
1.090 |
| CD2 |
HD23 |
1.100 |
1.090 |
| CA |
CB |
1.509 |
1.540 |
| CA |
C |
1.548 |
1.507 |
| CA |
HA |
1.099 |
1.090 |
| CB |
CB1 |
1.601 |
1.530 |
| CB |
CG |
1.499 |
1.546 |
| CB |
HB |
1.100 |
1.090 |
| CB1 |
CG1 |
1.542 |
1.507 |
| CB1 |
HB11 |
1.100 |
1.090 |
| CB1 |
HB12 |
1.100 |
1.091 |
| CG |
CG2 |
1.534 |
1.507 |
| CG |
HG |
1.100 |
1.090 |
| CG1 |
OD1 |
1.240 |
1.342 |
| CG1 |
OD2 |
1.244 |
1.208 |
| C |
O |
1.247 |
1.209 |
| C |
OXT |
1.252 |
1.343 |
| OD1 |
HOD1 |
0.950 |
0.967 |
| OXT |
HXT |
0.950 |
0.967 |
Bond Angles for KAI
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CD |
N |
CA |
107.9 |
105.8 |
| CD |
N |
HN1 |
110.0 |
111.0 |
| N |
CD |
CG |
101.2 |
103.2 |
| N |
CD |
HD1 |
112.3 |
110.7 |
| N |
CD |
HD2 |
114.0 |
110.7 |
| CA |
N |
HN1 |
110.0 |
111.0 |
| N |
CA |
CB |
110.4 |
107.1 |
| N |
CA |
C |
111.6 |
109.9 |
| N |
CA |
HA |
108.5 |
109.9 |
| CG |
CD |
HD1 |
112.3 |
110.6 |
| CG |
CD |
HD2 |
114.1 |
110.7 |
| CD |
CG |
CB |
104.6 |
103.0 |
| CD |
CG |
CG2 |
118.5 |
110.8 |
| CD |
CG |
HG |
112.7 |
110.7 |
| HD1 |
CD |
HD2 |
103.3 |
110.7 |
| CG2 |
CD1 |
HD11 |
110.5 |
120.0 |
| CG2 |
CD1 |
HD12 |
124.7 |
120.0 |
| CD1 |
CG2 |
CD2 |
125.2 |
120.0 |
| CD1 |
CG2 |
CG |
116.4 |
120.0 |
| HD11 |
CD1 |
HD12 |
124.8 |
119.9 |
| CG2 |
CD2 |
HD21 |
109.5 |
109.5 |
| CG2 |
CD2 |
HD22 |
109.5 |
109.4 |
| CG2 |
CD2 |
HD23 |
109.5 |
109.5 |
| CD2 |
CG2 |
CG |
118.2 |
120.0 |
| HD21 |
CD2 |
HD22 |
109.4 |
109.5 |
| HD21 |
CD2 |
HD23 |
109.4 |
109.5 |
| HD22 |
CD2 |
HD23 |
109.5 |
109.5 |
| CB |
CA |
C |
112.7 |
109.9 |
| CB |
CA |
HA |
107.3 |
109.9 |
| CA |
CB |
CB1 |
117.5 |
110.3 |
| CA |
CB |
CG |
100.0 |
105.1 |
| CA |
CB |
HB |
109.7 |
110.3 |
| C |
CA |
HA |
106.1 |
110.0 |
| CA |
C |
O |
115.6 |
120.0 |
| CA |
C |
OXT |
116.1 |
120.1 |
| CB1 |
CB |
CG |
106.2 |
110.3 |
| CB1 |
CB |
HB |
103.9 |
110.3 |
| CB |
CB1 |
CG1 |
110.8 |
109.5 |
| CB |
CB1 |
HB11 |
109.1 |
109.5 |
| CB |
CB1 |
HB12 |
108.7 |
109.5 |
| CG |
CB |
HB |
120.4 |
110.4 |
| CB |
CG |
CG2 |
121.6 |
110.7 |
| CB |
CG |
HG |
108.6 |
110.7 |
| CG1 |
CB1 |
HB11 |
109.0 |
109.5 |
| CG1 |
CB1 |
HB12 |
108.8 |
109.4 |
| CB1 |
CG1 |
OD1 |
115.3 |
120.0 |
| CB1 |
CG1 |
OD2 |
118.8 |
119.9 |
| HB11 |
CB1 |
HB12 |
110.5 |
109.4 |
| CG2 |
CG |
HG |
89.9 |
110.8 |
| OD1 |
CG1 |
OD2 |
125.9 |
120.0 |
| CG1 |
OD1 |
HOD1 |
109.5 |
117.0 |
| O |
C |
OXT |
128.3 |
119.9 |
| C |
OXT |
HXT |
109.5 |
117.0 |
Torsion Angles for KAI
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CA |
N |
CD |
HN1 |
240.0 |
239.5 |
| CD |
N |
CA |
CB |
349.7 |
25.3 |
| CD |
N |
CA |
C |
115.9 |
144.7 |
| CD |
N |
CA |
HA |
232.4 |
265.9 |
| CG |
CD |
N |
HD1 |
240.0 |
241.6 |
| CG |
CD |
N |
HD2 |
122.9 |
118.5 |
| N |
CD |
CG |
CB |
34.1 |
37.4 |
| N |
CD |
CG |
CG2 |
173.3 |
155.8 |
| N |
CD |
CG |
HG |
276.4 |
279.0 |
| HD1 |
CD |
N |
HD2 |
242.9 |
236.8 |
| CD |
N |
CA |
HN1 |
120.0 |
120.5 |
| CA |
N |
CD |
CG |
345.7 |
320.8 |
| CA |
N |
CD |
HD1 |
105.7 |
79.2 |
| CA |
N |
CD |
HD2 |
222.8 |
202.4 |
| CB |
CA |
N |
C |
233.9 |
240.6 |
| CB |
CA |
N |
HA |
117.4 |
119.4 |
| N |
CA |
CB |
CB1 |
277.3 |
239.9 |
| N |
CA |
CB |
CG |
31.6 |
358.8 |
| N |
CA |
CB |
HB |
159.1 |
117.8 |
| C |
CA |
N |
HA |
243.5 |
238.8 |
| N |
CA |
C |
O |
11.9 |
341.4 |
| N |
CA |
C |
OXT |
192.5 |
161.4 |
| CD |
N |
HN1 |
CA |
241.3 |
242.6 |
| HN1 |
N |
CD |
CG |
105.7 |
81.3 |
| HN1 |
N |
CD |
HD1 |
225.7 |
199.7 |
| HN1 |
N |
CD |
HD2 |
342.8 |
322.8 |
| HN1 |
N |
CA |
CB |
229.7 |
264.9 |
| HN1 |
N |
CA |
C |
355.9 |
24.2 |
| HN1 |
N |
CA |
HA |
112.4 |
145.5 |
| CG |
CD |
N |
CA |
345.7 |
320.8 |
| CG |
CD |
N |
HN1 |
105.7 |
81.3 |
| N |
CD |
CG |
HD1 |
120.0 |
118.4 |
| N |
CD |
CG |
HD2 |
237.1 |
241.5 |
| HD1 |
CD |
CG |
HD2 |
117.1 |
123.1 |
| CD1 |
CG2 |
CG |
CD |
348.4 |
343.7 |
| CD2 |
CG2 |
CG |
CD |
173.2 |
163.7 |
| CA |
CB |
CG |
CD |
320.7 |
338.1 |
| CB1 |
CB |
CG |
CD |
83.4 |
96.9 |
| CD |
CG |
CB |
HB |
200.7 |
219.1 |
| CB |
CG |
CD |
CG2 |
220.8 |
241.6 |
| CB |
CG |
CD |
HG |
117.8 |
118.4 |
| CG2 |
CG |
CD |
HG |
257.0 |
236.7 |
| HD1 |
CD |
N |
CA |
105.7 |
79.2 |
| HD1 |
CD |
N |
HN1 |
225.7 |
199.7 |
| N |
CD |
HD1 |
CG |
246.7 |
246.2 |
| N |
CD |
HD1 |
HD2 |
123.3 |
123.1 |
| CG |
CD |
HD1 |
HD2 |
236.7 |
236.9 |
| HD1 |
CD |
CG |
CB |
274.1 |
279.0 |
| HD1 |
CD |
CG |
CG2 |
53.3 |
37.3 |
| HD1 |
CD |
CG |
HG |
156.3 |
160.6 |
| HD2 |
CD |
N |
CA |
222.8 |
202.4 |
| HD2 |
CD |
N |
HN1 |
342.8 |
322.8 |
| N |
CD |
HD2 |
CG |
115.6 |
113.8 |
| N |
CD |
HD2 |
HD1 |
237.8 |
236.9 |
| CG |
CD |
HD2 |
HD1 |
122.2 |
123.0 |
| HD2 |
CD |
CG |
CB |
157.0 |
155.9 |
| HD2 |
CD |
CG |
CG2 |
296.2 |
274.2 |
| HD2 |
CD |
CG |
HG |
39.2 |
37.5 |
| CD |
CG |
CG2 |
CD1 |
348.4 |
343.7 |
| HD11 |
CD1 |
CG2 |
HD12 |
180.0 |
179.9 |
| CD1 |
CG2 |
CD2 |
HD21 |
67.9 |
94.9 |
| CD1 |
CG2 |
CD2 |
HD22 |
187.9 |
214.9 |
| CD1 |
CG2 |
CD2 |
HD23 |
307.9 |
334.9 |
| CD2 |
CG2 |
CD1 |
CG |
174.8 |
180.0 |
| CB |
CG |
CG2 |
CD1 |
120.5 |
97.2 |
| CD1 |
CG2 |
CG |
HG |
232.4 |
220.4 |
| CG2 |
CD1 |
HD11 |
HD12 |
180.0 |
180.1 |
| HD11 |
CD1 |
CG2 |
CD2 |
0.0 |
354.0 |
| HD11 |
CD1 |
CG2 |
CG |
185.2 |
174.0 |
| CG2 |
CD1 |
HD12 |
HD11 |
180.0 |
179.9 |
| HD12 |
CD1 |
CG2 |
CD2 |
180.0 |
174.1 |
| HD12 |
CD1 |
CG2 |
CG |
5.2 |
354.0 |
| CD |
CG |
CG2 |
CD2 |
173.2 |
163.7 |
| CD2 |
CG2 |
CD1 |
HD11 |
0.0 |
354.0 |
| CD2 |
CG2 |
CD1 |
HD12 |
180.0 |
174.1 |
| CD1 |
CG2 |
CD2 |
CG |
185.3 |
180.0 |
| HD21 |
CD2 |
CG2 |
HD22 |
240.0 |
240.0 |
| HD21 |
CD2 |
CG2 |
HD23 |
120.0 |
120.0 |
| HD22 |
CD2 |
CG2 |
HD23 |
239.9 |
240.0 |
| CB |
CG |
CG2 |
CD2 |
305.3 |
277.2 |
| CD2 |
CG2 |
CG |
HG |
57.2 |
40.4 |
| CG2 |
CD2 |
HD21 |
HD22 |
120.0 |
119.9 |
| CG2 |
CD2 |
HD21 |
HD23 |
240.0 |
240.0 |
| HD21 |
CD2 |
CG2 |
CG |
242.6 |
274.9 |
| HD22 |
CD2 |
HD21 |
HD23 |
120.0 |
120.0 |
| CG2 |
CD2 |
HD22 |
HD21 |
240.0 |
240.0 |
| CG2 |
CD2 |
HD22 |
HD23 |
120.0 |
120.0 |
| HD22 |
CD2 |
CG2 |
CG |
2.6 |
34.9 |
| HD21 |
CD2 |
HD22 |
HD23 |
240.0 |
240.0 |
| CG2 |
CD2 |
HD23 |
HD21 |
120.0 |
120.0 |
| CG2 |
CD2 |
HD23 |
HD22 |
240.0 |
240.0 |
| HD23 |
CD2 |
CG2 |
CG |
122.7 |
155.0 |
| HD21 |
CD2 |
HD23 |
HD22 |
120.0 |
120.1 |
| CB |
CA |
N |
HN1 |
229.7 |
264.9 |
| N |
CA |
CB |
C |
125.5 |
119.4 |
| N |
CA |
CB |
HA |
241.9 |
240.6 |
| CD |
CG |
CB |
CA |
320.7 |
338.1 |
| C |
CA |
CB |
HA |
116.4 |
121.2 |
| CB |
CA |
C |
O |
136.7 |
99.0 |
| CB |
CA |
C |
OXT |
317.3 |
279.1 |
| CB1 |
CB |
CA |
CG |
245.7 |
241.1 |
| CB1 |
CB |
CA |
HB |
118.3 |
122.1 |
| CA |
CB |
CB1 |
CG1 |
280.9 |
292.7 |
| CA |
CB |
CB1 |
HB11 |
40.9 |
52.8 |
| CA |
CB |
CB1 |
HB12 |
161.4 |
172.7 |
| CG |
CB |
CA |
HB |
232.5 |
241.0 |
| CA |
CB |
CG |
CG2 |
183.1 |
219.7 |
| CA |
CB |
CG |
HG |
81.2 |
96.5 |
| C |
CA |
N |
HN1 |
355.9 |
24.2 |
| N |
CA |
C |
CB |
235.1 |
242.3 |
| N |
CA |
C |
HA |
118.0 |
121.2 |
| CB |
CA |
C |
HA |
242.9 |
238.8 |
| C |
CA |
CB |
CB1 |
151.8 |
120.5 |
| C |
CA |
CB |
CG |
266.1 |
239.4 |
| C |
CA |
CB |
HB |
33.6 |
358.4 |
| O |
C |
CA |
OXT |
179.4 |
180.0 |
| CA |
C |
OXT |
HXT |
179.3 |
180.0 |
| HA |
CA |
N |
HN1 |
112.4 |
145.5 |
| N |
CA |
HA |
CB |
119.3 |
117.7 |
| N |
CA |
HA |
C |
240.0 |
238.8 |
| CB |
CA |
HA |
C |
120.7 |
121.2 |
| HA |
CA |
CB |
CB1 |
35.4 |
359.3 |
| HA |
CA |
CB |
CG |
149.7 |
118.1 |
| HA |
CA |
CB |
HB |
277.2 |
237.2 |
| HA |
CA |
C |
O |
253.8 |
220.2 |
| HA |
CA |
C |
OXT |
74.5 |
40.3 |
| CD |
CG |
CB |
CB1 |
83.4 |
96.9 |
| CB1 |
CB |
CA |
C |
151.8 |
120.5 |
| CB1 |
CB |
CA |
HA |
35.4 |
359.3 |
| CA |
CB |
CB1 |
CG |
110.8 |
115.6 |
| CA |
CB |
CB1 |
HB |
238.7 |
237.9 |
| CG |
CB |
CB1 |
HB |
127.9 |
122.2 |
| CB1 |
CB |
CG |
CG2 |
305.8 |
338.5 |
| CB1 |
CB |
CG |
HG |
203.9 |
215.3 |
| CG1 |
CB1 |
CB |
HB11 |
240.0 |
240.0 |
| CG1 |
CB1 |
CB |
HB12 |
119.5 |
120.0 |
| CB |
CB1 |
CG1 |
OD1 |
168.6 |
180.0 |
| CB |
CB1 |
CG1 |
OD2 |
347.4 |
0.0 |
| HB11 |
CB1 |
CB |
HB12 |
239.5 |
240.0 |
| CB |
CG |
CD |
HD1 |
274.1 |
279.0 |
| CB |
CG |
CD |
HD2 |
157.0 |
155.9 |
| CD |
CG |
CB |
CG2 |
137.6 |
118.4 |
| CD |
CG |
CB |
HG |
239.5 |
241.6 |
| CD1 |
CG2 |
CG |
CB |
120.5 |
97.2 |
| CD2 |
CG2 |
CG |
CB |
305.3 |
277.2 |
| CG |
CB |
CA |
C |
266.1 |
239.4 |
| CG |
CB |
CA |
HA |
149.7 |
118.1 |
| CA |
CB |
CG |
CB1 |
237.3 |
241.1 |
| CA |
CB |
CG |
HB |
120.0 |
119.0 |
| CB1 |
CB |
CG |
HB |
242.6 |
237.8 |
| CG |
CB |
CB1 |
CG1 |
170.1 |
177.1 |
| CG |
CB |
CB1 |
HB11 |
290.1 |
297.1 |
| CG |
CB |
CB1 |
HB12 |
50.6 |
57.1 |
| CG2 |
CG |
CB |
HG |
101.9 |
123.2 |
| HB |
CB |
CA |
C |
33.6 |
358.4 |
| HB |
CB |
CA |
HA |
277.2 |
237.2 |
| CA |
CB |
HB |
CB1 |
126.4 |
122.1 |
| CA |
CB |
HB |
CG |
245.0 |
244.3 |
| CB1 |
CB |
HB |
CG |
118.5 |
122.2 |
| HB |
CB |
CB1 |
CG1 |
42.2 |
54.9 |
| HB |
CB |
CB1 |
HB11 |
162.2 |
174.9 |
| HB |
CB |
CB1 |
HB12 |
282.7 |
294.9 |
| HB |
CB |
CG |
CG2 |
63.2 |
100.7 |
| HB |
CB |
CG |
HG |
321.3 |
337.5 |
| CG1 |
CB1 |
CB |
CG |
170.1 |
177.1 |
| CG1 |
CB1 |
CB |
HB |
42.2 |
54.9 |
| CB |
CB1 |
CG1 |
HB11 |
120.0 |
120.1 |
| CB |
CB1 |
CG1 |
HB12 |
240.5 |
240.0 |
| HB11 |
CB1 |
CG1 |
HB12 |
120.5 |
119.9 |
| OD1 |
CG1 |
CB1 |
OD2 |
181.2 |
180.0 |
| CB1 |
CG1 |
OD1 |
HOD1 |
178.7 |
180.0 |
| HB11 |
CB1 |
CB |
CG |
290.1 |
297.1 |
| HB11 |
CB1 |
CB |
HB |
162.2 |
174.9 |
| CB |
CB1 |
HB11 |
CG1 |
238.9 |
239.9 |
| CB |
CB1 |
HB11 |
HB12 |
119.5 |
120.0 |
| CG1 |
CB1 |
HB11 |
HB12 |
240.5 |
240.1 |
| HB11 |
CB1 |
CG1 |
OD1 |
48.5 |
60.0 |
| HB11 |
CB1 |
CG1 |
OD2 |
227.4 |
240.0 |
| HB12 |
CB1 |
CB |
CG |
50.6 |
57.1 |
| HB12 |
CB1 |
CB |
HB |
282.7 |
294.9 |
| CB |
CB1 |
HB12 |
CG1 |
120.7 |
120.0 |
| CB |
CB1 |
HB12 |
HB11 |
240.3 |
240.0 |
| CG1 |
CB1 |
HB12 |
HB11 |
119.6 |
119.9 |
| HB12 |
CB1 |
CG1 |
OD1 |
288.0 |
300.1 |
| HB12 |
CB1 |
CG1 |
OD2 |
106.9 |
120.1 |
| CG2 |
CG |
CD |
HD1 |
53.3 |
37.3 |
| CG2 |
CG |
CD |
HD2 |
296.2 |
274.2 |
| CD |
CG |
CG2 |
CB |
227.9 |
246.5 |
| CD |
CG |
CG2 |
HG |
116.0 |
123.3 |
| CG |
CG2 |
CD1 |
HD11 |
185.2 |
174.0 |
| CG |
CG2 |
CD1 |
HD12 |
5.2 |
354.0 |
| CD1 |
CG2 |
CG |
CD2 |
175.2 |
180.0 |
| CG |
CG2 |
CD2 |
HD21 |
242.6 |
274.9 |
| CG |
CG2 |
CD2 |
HD22 |
2.6 |
34.9 |
| CG |
CG2 |
CD2 |
HD23 |
122.7 |
155.0 |
| CG2 |
CG |
CB |
HB |
63.2 |
100.7 |
| CB |
CG |
CG2 |
HG |
248.0 |
236.8 |
| HG |
CG |
CD |
HD1 |
156.3 |
160.6 |
| HG |
CG |
CD |
HD2 |
39.2 |
37.5 |
| CD |
CG |
HG |
CB |
115.4 |
113.5 |
| CD |
CG |
HG |
CG2 |
238.9 |
236.7 |
| HG |
CG |
CB |
HB |
321.3 |
337.5 |
| CB |
CG |
HG |
CG2 |
123.5 |
123.2 |
| OD1 |
CG1 |
CB1 |
HB11 |
48.5 |
60.0 |
| OD1 |
CG1 |
CB1 |
HB12 |
288.0 |
300.1 |
| CB1 |
CG1 |
OD1 |
OD2 |
178.7 |
180.0 |
| OD2 |
CG1 |
CB1 |
HB11 |
227.4 |
240.0 |
| OD2 |
CG1 |
CB1 |
HB12 |
106.9 |
120.1 |
| CB1 |
CG1 |
OD2 |
OD1 |
181.3 |
180.0 |
| OD2 |
CG1 |
OD1 |
HOD1 |
0.0 |
0.0 |
| O |
C |
CA |
HA |
253.8 |
220.2 |
| CA |
C |
O |
OXT |
180.7 |
180.0 |
| O |
C |
OXT |
HXT |
0.0 |
0.0 |
| OXT |
C |
CA |
HA |
74.5 |
40.3 |
| CA |
C |
OXT |
O |
179.3 |
180.0 |
| HOD1 |
OD1 |
CG1 |
OD2 |
0.0 |
0.0 |