PDB Chemical Component K9S
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for K9S
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C1 |
S2 |
1.720 |
1.753 |
| C1 |
C5 |
1.437 |
1.319 |
| N1 |
C10 |
1.459 |
1.469 |
| S2 |
C3 |
1.752 |
1.758 |
| C3 |
C4 |
1.423 |
1.398 |
| C3 |
C6 |
1.387 |
1.398 |
| C4 |
C5 |
1.384 |
1.454 |
| C4 |
C9 |
1.412 |
1.412 |
| C5 |
C10 |
1.480 |
1.506 |
| C6 |
C7 |
1.444 |
1.375 |
| C7 |
C8 |
1.345 |
1.388 |
| C8 |
C9 |
1.478 |
1.361 |
| C1 |
H1 |
1.080 |
1.080 |
| N1 |
H11N |
1.000 |
1.009 |
| N1 |
H12N |
1.000 |
1.009 |
| C10 |
H101 |
1.100 |
1.090 |
| C10 |
H102 |
1.100 |
1.089 |
| C6 |
H6 |
1.080 |
1.080 |
| C9 |
H9 |
1.080 |
1.080 |
| C7 |
H7 |
1.080 |
1.080 |
| C8 |
H8 |
1.080 |
1.080 |
Bond Angles for K9S
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| S2 |
C1 |
C5 |
110.8 |
111.4 |
| C1 |
S2 |
C3 |
93.0 |
92.2 |
| S2 |
C1 |
H1 |
124.6 |
124.3 |
| C1 |
C5 |
C4 |
112.5 |
114.8 |
| C1 |
C5 |
C10 |
125.6 |
122.6 |
| C5 |
C1 |
H1 |
124.6 |
124.3 |
| N1 |
C10 |
C5 |
112.4 |
109.5 |
| C10 |
N1 |
H11N |
109.5 |
111.0 |
| C10 |
N1 |
H12N |
109.5 |
111.0 |
| N1 |
C10 |
H101 |
108.8 |
109.4 |
| N1 |
C10 |
H102 |
108.7 |
109.5 |
| S2 |
C3 |
C4 |
109.4 |
109.6 |
| S2 |
C3 |
C6 |
130.6 |
130.6 |
| C4 |
C3 |
C6 |
120.0 |
119.8 |
| C3 |
C4 |
C5 |
114.3 |
111.9 |
| C3 |
C4 |
C9 |
121.0 |
118.8 |
| C3 |
C6 |
C7 |
120.9 |
120.2 |
| C3 |
C6 |
H6 |
119.6 |
119.9 |
| C5 |
C4 |
C9 |
124.7 |
129.3 |
| C4 |
C5 |
C10 |
122.0 |
122.6 |
| C4 |
C9 |
C8 |
116.3 |
120.5 |
| C4 |
C9 |
H9 |
121.9 |
119.8 |
| C5 |
C10 |
H101 |
108.7 |
109.5 |
| C5 |
C10 |
H102 |
108.8 |
109.5 |
| C6 |
C7 |
C8 |
118.7 |
120.2 |
| C7 |
C6 |
H6 |
119.5 |
119.9 |
| C6 |
C7 |
H7 |
120.6 |
119.9 |
| C7 |
C8 |
C9 |
123.1 |
120.6 |
| C8 |
C7 |
H7 |
120.6 |
119.9 |
| C7 |
C8 |
H8 |
118.5 |
119.7 |
| C8 |
C9 |
H9 |
121.8 |
119.7 |
| C9 |
C8 |
H8 |
118.5 |
119.7 |
| H11N |
N1 |
H12N |
109.4 |
111.0 |
| H101 |
C10 |
H102 |
109.5 |
109.5 |
Torsion Angles for K9S
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| S2 |
C1 |
C5 |
C4 |
0.7 |
359.9 |
| S2 |
C1 |
C5 |
C10 |
179.2 |
180.0 |
| C5 |
C1 |
S2 |
H1 |
180.0 |
180.4 |
| C1 |
S2 |
C3 |
C4 |
1.8 |
0.0 |
| C1 |
S2 |
C3 |
C6 |
178.7 |
180.0 |
| C5 |
C1 |
S2 |
C3 |
358.6 |
0.0 |
| S2 |
C1 |
C5 |
H1 |
180.0 |
179.6 |
| N1 |
C10 |
C5 |
C1 |
10.0 |
260.0 |
| C3 |
C4 |
C5 |
C1 |
0.7 |
0.1 |
| C1 |
C5 |
C4 |
C9 |
178.4 |
180.0 |
| C4 |
C5 |
C1 |
C10 |
181.5 |
179.9 |
| C1 |
C5 |
C10 |
H101 |
249.5 |
140.0 |
| C1 |
C5 |
C10 |
H102 |
130.4 |
20.0 |
| C1 |
C5 |
C10 |
N1 |
10.0 |
260.0 |
| C4 |
C5 |
C10 |
N1 |
188.4 |
80.0 |
| C5 |
C10 |
N1 |
H101 |
239.6 |
240.0 |
| C5 |
C10 |
N1 |
H102 |
120.4 |
120.0 |
| H11N |
N1 |
C10 |
H12N |
240.0 |
236.1 |
| H101 |
C10 |
N1 |
H102 |
240.9 |
240.0 |
| C3 |
S2 |
C1 |
C5 |
358.6 |
0.0 |
| C3 |
S2 |
C1 |
H1 |
178.6 |
179.7 |
| C4 |
C3 |
S2 |
C6 |
183.0 |
180.0 |
| S2 |
C3 |
C4 |
C5 |
358.3 |
359.9 |
| S2 |
C3 |
C4 |
C9 |
180.5 |
180.0 |
| S2 |
C3 |
C6 |
C7 |
180.7 |
180.0 |
| S2 |
C3 |
C6 |
H6 |
0.7 |
360.0 |
| C1 |
C5 |
C4 |
C3 |
0.7 |
0.1 |
| S2 |
C3 |
C4 |
C6 |
177.3 |
180.0 |
| C4 |
C3 |
C6 |
C7 |
357.4 |
0.0 |
| C4 |
C3 |
C6 |
H6 |
177.4 |
180.0 |
| C5 |
C4 |
C3 |
C9 |
177.8 |
179.9 |
| C3 |
C4 |
C5 |
C10 |
182.1 |
180.0 |
| C3 |
C4 |
C9 |
C8 |
358.5 |
360.0 |
| C3 |
C4 |
C9 |
H9 |
178.5 |
179.9 |
| S2 |
C3 |
C6 |
C4 |
183.3 |
180.0 |
| C6 |
C3 |
C4 |
C5 |
180.9 |
179.9 |
| C6 |
C3 |
C4 |
C9 |
3.1 |
0.0 |
| C3 |
C6 |
C7 |
C8 |
0.5 |
359.9 |
| C7 |
C6 |
C3 |
H6 |
180.0 |
180.1 |
| C3 |
C6 |
C7 |
H7 |
180.5 |
180.0 |
| C1 |
C5 |
C4 |
C10 |
178.6 |
180.1 |
| C4 |
C5 |
C1 |
H1 |
180.7 |
180.3 |
| N1 |
C10 |
C5 |
C4 |
188.4 |
80.0 |
| C5 |
C4 |
C3 |
C6 |
180.9 |
179.9 |
| C3 |
C4 |
C5 |
C9 |
182.3 |
180.1 |
| C5 |
C4 |
C9 |
C8 |
180.9 |
180.1 |
| C5 |
C4 |
C9 |
H9 |
0.9 |
0.1 |
| C4 |
C5 |
C10 |
H101 |
67.9 |
320.1 |
| C4 |
C5 |
C10 |
H102 |
308.8 |
200.1 |
| C9 |
C4 |
C3 |
C6 |
3.1 |
0.0 |
| C3 |
C4 |
C9 |
C5 |
177.6 |
179.9 |
| C9 |
C4 |
C5 |
C10 |
359.8 |
359.9 |
| C7 |
C8 |
C9 |
C4 |
359.4 |
360.0 |
| C8 |
C9 |
C4 |
H9 |
180.0 |
180.0 |
| C4 |
C9 |
C8 |
H8 |
179.4 |
180.1 |
| C1 |
C5 |
C10 |
C4 |
181.6 |
179.9 |
| C10 |
C5 |
C1 |
H1 |
359.2 |
0.3 |
| C5 |
C10 |
N1 |
H11N |
180.0 |
56.1 |
| C5 |
C10 |
N1 |
H12N |
300.0 |
180.0 |
| N1 |
C10 |
C5 |
H101 |
120.4 |
120.0 |
| N1 |
C10 |
C5 |
H102 |
239.6 |
240.0 |
| C10 |
C5 |
C4 |
C9 |
359.8 |
359.9 |
| H101 |
C10 |
C5 |
H102 |
119.1 |
120.0 |
| C3 |
C6 |
C7 |
H6 |
180.0 |
179.9 |
| C6 |
C7 |
C8 |
C9 |
1.1 |
0.1 |
| C8 |
C7 |
C6 |
H7 |
180.0 |
179.9 |
| C6 |
C7 |
C8 |
H8 |
181.1 |
180.0 |
| C4 |
C9 |
C8 |
C7 |
359.4 |
360.0 |
| C8 |
C7 |
C6 |
H6 |
180.5 |
180.0 |
| C6 |
C7 |
C8 |
H7 |
180.0 |
180.1 |
| C7 |
C8 |
C9 |
H9 |
179.4 |
180.0 |
| C9 |
C8 |
C7 |
H8 |
180.0 |
180.1 |
| C4 |
C9 |
C8 |
H9 |
180.0 |
180.0 |
| C9 |
C8 |
C7 |
H7 |
181.1 |
180.0 |
| C7 |
C8 |
C9 |
H8 |
180.0 |
179.9 |
| S2 |
C1 |
H1 |
C5 |
180.0 |
180.4 |
| H1 |
C1 |
S2 |
C3 |
178.6 |
179.7 |
| H1 |
C1 |
C5 |
C4 |
180.7 |
180.3 |
| H1 |
C1 |
C5 |
C10 |
359.2 |
0.3 |
| H11N |
N1 |
C10 |
C5 |
180.0 |
56.1 |
| C10 |
N1 |
H11N |
H12N |
120.0 |
123.9 |
| H11N |
N1 |
C10 |
H101 |
300.4 |
176.0 |
| H11N |
N1 |
C10 |
H102 |
59.6 |
296.0 |
| H12N |
N1 |
C10 |
C5 |
300.0 |
180.0 |
| C10 |
N1 |
H12N |
H11N |
240.0 |
236.1 |
| H12N |
N1 |
C10 |
H101 |
60.4 |
300.0 |
| H12N |
N1 |
C10 |
H102 |
179.6 |
60.0 |
| N1 |
C10 |
H101 |
C5 |
237.3 |
240.0 |
| H101 |
C10 |
N1 |
H11N |
300.4 |
176.0 |
| H101 |
C10 |
N1 |
H12N |
60.4 |
300.0 |
| N1 |
C10 |
H101 |
H102 |
118.7 |
120.0 |
| C5 |
C10 |
H101 |
H102 |
241.3 |
240.0 |
| N1 |
C10 |
H102 |
C5 |
122.7 |
120.0 |
| H102 |
C10 |
N1 |
H11N |
59.6 |
296.0 |
| H102 |
C10 |
N1 |
H12N |
179.6 |
60.0 |
| N1 |
C10 |
H102 |
H101 |
241.3 |
240.0 |
| C5 |
C10 |
H102 |
H101 |
118.6 |
120.0 |
| C3 |
C6 |
H6 |
C7 |
180.0 |
180.1 |
| H6 |
C6 |
C7 |
C8 |
180.5 |
180.0 |
| H6 |
C6 |
C7 |
H7 |
0.5 |
0.1 |
| C4 |
C9 |
H9 |
C8 |
180.0 |
180.0 |
| H9 |
C9 |
C8 |
H8 |
359.4 |
0.1 |
| C6 |
C7 |
H7 |
C8 |
180.0 |
179.9 |
| H7 |
C7 |
C6 |
H6 |
0.5 |
0.1 |
| H7 |
C7 |
C8 |
C9 |
181.1 |
180.0 |
| H7 |
C7 |
C8 |
H8 |
1.0 |
359.9 |
| C7 |
C8 |
H8 |
C9 |
180.0 |
180.1 |
| H8 |
C8 |
C7 |
H7 |
1.0 |
359.9 |
| H8 |
C8 |
C9 |
H9 |
359.4 |
0.1 |