PDB Chemical Component K9L

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for K9L

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
N01 C02 1.341 1.304
N01 C05 1.355 1.342
C02 N03 1.341 1.360
N03 C04 1.336 1.373
N03 C12 1.337 1.395
C04 C05 1.386 1.346
C1' C2' 1.395 1.381
C1' C24 1.515 1.507
C1' C6' 1.395 1.383
N11 C12 1.356 1.323
N11 C16 1.348 1.322
C12 N13 1.357 1.323
N13 C14 1.341 1.322
C14 C15 1.393 1.386
C15 C16 1.397 1.386
C16 C17 1.510 1.508
C17 C18 1.523 1.530
C18 N19 1.480 1.469
N19 C21 1.478 1.469
C2' C3' 1.396 1.385
C21 C22 1.526 1.530
C21 C23 1.531 1.530
C22 C23 1.522 1.531
C23 C24 1.522 1.530
C3' C4' 1.393 1.385
C3' F7' 1.345 1.351
C4' C5' 1.392 1.382
C5' C6' 1.391 1.382
C02 H02 1.080 1.080
C04 H04 1.081 1.080
C05 H05 1.080 1.080
C14 H14 1.080 1.080
C15 H15 1.080 1.080
C17 H17 1.100 1.090
C17 H17A 1.100 1.090
C18 H18 1.100 1.090
C18 H18A 1.100 1.089
N19 HN19 1.000 1.009
C2' H2' 1.080 1.080
C21 H21 1.100 1.090
C22 H22 1.100 1.090
C22 H22A 1.100 1.090
C23 H23 1.100 1.090
C24 H24 1.100 1.090
C24 H24A 1.100 1.090
C4' H4' 1.080 1.080
C5' H5' 1.080 1.080
C6' H6' 1.080 1.080

Bond Angles for K9L

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C02 N01 C05 112.0 109.3
N01 C02 N03 101.8 108.6
N01 C02 H02 129.1 125.7
N01 C05 C04 107.3 108.3
N01 C05 H05 126.3 125.9
C02 N03 C04 116.2 107.0
C02 N03 C12 121.3 126.5
N03 C02 H02 129.1 125.7
C04 N03 C12 122.4 126.5
N03 C04 C05 102.6 106.8
N03 C04 H04 128.7 126.6
N03 C12 N11 117.9 119.2
N03 C12 N13 120.8 119.2
C05 C04 H04 128.7 126.6
C04 C05 H05 126.3 125.9
C2' C1' C24 121.2 120.0
C2' C1' C6' 119.7 120.0
C1' C2' C3' 119.8 120.0
C1' C2' H2' 120.1 120.0
C24 C1' C6' 119.1 120.0
C1' C24 C23 115.1 109.5
C1' C24 H24 108.1 109.5
C1' C24 H24A 108.0 109.5
C1' C6' C5' 120.6 120.0
C1' C6' H6' 119.7 119.9
C12 N11 C16 120.1 120.7
N11 C12 N13 121.3 121.6
N11 C16 C15 119.7 119.2
N11 C16 C17 119.4 120.4
C12 N13 C14 120.3 120.8
N13 C14 C15 119.8 119.2
N13 C14 H14 120.1 120.4
C14 C15 C16 118.8 118.5
C15 C14 H14 120.1 120.4
C14 C15 H15 120.6 120.7
C15 C16 C17 120.9 120.4
C16 C15 H15 120.6 120.7
C16 C17 C18 110.0 109.4
C16 C17 H17 109.3 109.5
C16 C17 H17A 109.3 109.4
C17 C18 N19 109.6 109.4
C18 C17 H17 109.3 109.5
C18 C17 H17A 109.3 109.5
C17 C18 H18 109.5 109.5
C17 C18 H18A 109.4 109.5
C18 N19 C21 110.4 111.0
N19 C18 H18 109.5 109.5
N19 C18 H18A 109.5 109.5
C18 N19 HN19 109.2 111.0
N19 C21 C22 108.7 117.5
N19 C21 C23 111.7 117.5
C21 N19 HN19 109.2 111.0
N19 C21 H21 121.2 115.5
C2' C3' C4' 120.2 119.9
C2' C3' F7' 120.4 120.0
C3' C2' H2' 120.1 120.0
C22 C21 C23 59.8 60.1
C21 C22 C23 60.3 60.0
C22 C21 H21 120.1 117.5
C21 C22 H22 119.9 117.5
C21 C22 H22A 120.0 117.5
C21 C23 C22 60.0 60.0
C21 C23 C24 109.0 117.5
C23 C21 H21 120.0 117.5
C21 C23 H23 121.9 117.5
C22 C23 C24 105.5 117.5
C23 C22 H22 119.9 117.5
C23 C22 H22A 120.0 117.5
C22 C23 H23 122.1 117.5
C24 C23 H23 122.1 115.6
C23 C24 H24 108.0 109.5
C23 C24 H24A 108.1 109.4
C4' C3' F7' 119.4 120.1
C3' C4' C5' 120.1 120.0
C3' C4' H4' 120.0 120.0
C4' C5' C6' 119.6 120.0
C5' C4' H4' 119.9 120.0
C4' C5' H5' 120.2 119.9
C6' C5' H5' 120.2 120.0
C5' C6' H6' 119.7 120.0
H17 C17 H17A 109.5 109.5
H18 C18 H18A 109.4 109.5
H22 C22 H22A 109.5 115.6
H24 C24 H24A 109.4 109.5

Torsion Angles for K9L

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C02 N01 C05 C04 359.5 360.0
C02 N01 C05 H05 179.5 180.0
N01 C02 N03 C04 358.6 360.0
N01 C02 N03 C12 182.1 180.0
N03 C02 N01 H02 180.0 180.0
C05 N01 C02 N03 1.1 0.0
C05 N01 C02 H02 181.1 180.0
N03 C04 C05 N01 359.7 0.0
N01 C05 C04 H04 179.7 180.0
C04 C05 N01 H05 180.0 180.0
N03 C02 N01 C05 1.1 0.0
N01 C02 N03 H02 180.0 180.0
C04 N03 C02 C12 176.5 180.0
C02 N03 C04 C05 1.1 360.0
C02 N03 C04 H04 181.1 180.0
C02 N03 C12 N11 12.0 360.0
C02 N03 C12 N13 189.7 180.0
N01 C05 C04 N03 359.7 0.0
C02 N03 C04 C12 183.6 180.0
C04 N03 C02 H02 178.6 180.0
C04 N03 C12 N11 195.7 180.0
C04 N03 C12 N13 13.4 0.0
C05 C04 N03 H04 180.0 179.9
N03 C04 C05 H05 179.7 180.0
C02 N03 C12 C04 176.3 180.0
C12 N03 C02 H02 2.1 0.1
C12 N03 C04 C05 177.5 180.0
C12 N03 C04 H04 357.6 0.0
N03 C12 N11 C16 179.2 180.0
N11 C12 N03 N13 182.3 180.0
N03 C12 N13 C14 181.2 180.0
N01 C05 C04 H05 180.0 180.0
C05 C04 N03 C12 177.5 180.0
N03 C04 C05 H04 180.0 180.1
C24 C1' C2' C6' 177.8 180.3
C2' C1' C24 C23 58.3 89.9
C2' C1' C24 H24 179.1 210.0
C2' C1' C24 H24A 297.5 330.0
C2' C1' C6' C5' 358.8 0.6
C2' C1' C6' H6' 178.8 180.0
C1' C2' C3' C4' 359.8 0.0
C1' C2' C3' F7' 179.2 180.0
C3' C2' C1' H2' 180.0 179.9
C2' C1' C24 C6' 182.2 179.7
C24 C1' C2' C3' 178.8 180.0
C24 C1' C2' H2' 358.8 0.0
C24 C1' C6' C5' 181.0 180.3
C24 C1' C6' H6' 1.0 359.8
C21 C23 C24 C1' 195.9 185.0
C22 C23 C24 C1' 132.9 116.4
C1' C24 C23 H23 347.2 330.7
C23 C24 C1' H24 239.2 240.0
C23 C24 C1' H24A 120.8 119.9
H24 C24 C1' H24A 241.7 239.9
C2' C1' C6' C24 177.8 180.3
C6' C1' C2' C3' 1.0 359.7
C6' C1' C2' H2' 181.0 179.8
C6' C1' C24 C23 236.1 270.2
C6' C1' C24 H24 356.9 30.3
C6' C1' C24 H24A 115.3 150.3
C4' C5' C6' C1' 0.6 359.5
C1' C6' C5' H5' 180.7 179.8
C5' C6' C1' H6' 180.0 180.5
N03 C12 N11 N13 177.7 180.0
C12 N11 C16 C15 358.8 360.0
C12 N11 C16 C17 180.2 180.0
N11 C12 N13 C14 358.8 0.0
C16 N11 C12 N13 1.5 360.0
C14 C15 C16 N11 0.6 0.0
C15 C16 N11 C17 178.6 180.0
N11 C16 C15 H15 180.6 180.0
N11 C16 C17 C18 44.4 305.0
N11 C16 C17 H17 164.5 64.9
N11 C16 C17 H17A 284.4 185.0
N03 C12 N13 N11 182.4 180.0
N13 C12 N11 C16 1.5 360.0
C12 N13 C14 C15 0.5 0.0
C12 N13 C14 H14 180.6 180.0
N13 C14 C15 C16 359.7 360.0
C15 C14 N13 H14 180.0 180.0
N13 C14 C15 H15 179.7 180.0
N11 C16 C15 C14 0.6 0.0
N13 C14 C15 H14 180.0 180.0
C14 C15 C16 C17 179.2 180.0
C16 C15 C14 H15 180.0 180.0
N11 C16 C15 C17 181.5 180.0
C16 C15 C14 H14 179.7 180.0
C14 C15 C16 H15 180.0 180.0
C15 C16 C17 C18 225.9 125.0
C15 C16 C17 H17 346.0 244.9
C15 C16 C17 H17A 105.9 5.0
N11 C16 C17 C15 178.5 180.0
C17 C16 C15 H15 359.2 0.0
C16 C17 C18 N19 187.8 180.0
C18 C17 C16 H17 239.9 240.1
C18 C17 C16 H17A 120.0 120.0
C16 C17 C18 H18 307.8 300.0
C16 C17 C18 H18A 67.7 60.0
H17 C17 C16 H17A 240.1 239.9
C16 C17 C18 H17 120.1 120.0
C16 C17 C18 H17A 239.9 240.1
C17 C18 N19 C21 289.8 180.0
N19 C18 C17 H18 240.0 240.0
N19 C18 C17 H18A 120.0 120.0
C17 C18 N19 HN19 49.9 304.0
H17 C17 C18 H17A 119.9 120.1
H18 C18 C17 H18A 240.1 239.9
N19 C18 C17 H17 67.7 60.0
N19 C18 C17 H17A 307.8 299.9
C17 C18 N19 H18 120.0 120.0
C17 C18 N19 H18A 240.0 240.0
C18 N19 C21 C22 112.8 136.4
C18 N19 C21 C23 176.9 205.1
C21 N19 C18 HN19 239.8 236.0
C18 N19 C21 H21 327.3 350.8
H18 C18 N19 H18A 119.9 120.1
C21 N19 C18 H18 169.7 60.0
C21 N19 C18 H18A 49.8 299.9
C18 N19 C21 HN19 120.2 124.0
C22 C21 N19 C23 296.0 291.3
N19 C21 C22 C23 104.7 107.5
C22 C21 N19 H21 145.5 145.6
N19 C21 C22 H22 214.3 215.0
N19 C21 C22 H22A 355.1 0.1
N19 C21 C23 C22 260.4 252.5
N19 C21 C23 C24 163.1 145.0
C23 C21 N19 H21 209.6 214.3
N19 C21 C23 H23 11.7 359.9
C3' C2' C1' C24 178.8 180.0
C3' C2' C1' C6' 1.0 359.7
C1' C2' C3' H2' 180.0 180.1
C4' C3' C2' F7' 180.6 180.0
C2' C3' C4' C5' 359.7 0.0
C2' C3' C4' H4' 179.7 180.0
C22 C21 N19 HN19 352.7 12.3
N19 C21 C22 H21 214.0 215.1
C22 C21 C23 C22 -0.0 360.0
C22 C21 C23 C24 262.7 252.6
C23 C21 C22 H21 109.3 107.6
C22 C21 C23 H23 111.3 107.5
C21 C22 C23 C24 103.3 107.5
C23 C22 C21 H22 250.4 252.5
C23 C22 C21 H22A 109.6 107.5
C21 C22 C23 H23 249.0 252.5
H22 C22 C21 H22A 219.1 214.9
C1' C24 C23 C21 195.9 185.0
C23 C21 N19 HN19 56.7 81.0
N19 C21 C23 H21 150.8 145.0
C23 C21 C22 C23 -0.0 360.0
C22 C21 C23 H21 250.5 252.5
C23 C21 C22 H22 109.6 107.5
C23 C21 C22 H22A 250.4 252.5
C22 C23 C21 C24 97.3 107.4
C21 C23 C22 H22 250.5 252.5
C21 C23 C22 H22A 109.6 107.5
C22 C23 C21 H23 248.7 252.5
C24 C23 C21 H23 151.4 145.1
C21 C23 C24 H24 75.0 65.0
C21 C23 C24 H24A 316.7 304.9
C1' C24 C23 C22 132.9 116.4
C23 C22 C21 C23 -0.0 -0.0
C23 C22 C21 H21 250.7 252.4
C21 C22 C23 H22 109.5 107.5
C21 C22 C23 H22A 250.4 252.5
C21 C23 C22 C24 256.7 252.5
C22 C23 C21 H21 109.5 107.5
C21 C23 C22 H23 111.0 107.5
C24 C23 C22 H23 214.4 215.0
C22 C23 C24 H24 12.0 356.4
C22 C23 C24 H24A 253.7 236.3
H22 C22 C23 H22A 140.9 145.0
C23 C24 C1' C6' 236.1 270.2
C1' C24 C23 H24 120.9 120.0
C1' C24 C23 H24A 239.2 240.1
C21 C23 C24 C22 63.0 68.6
C24 C23 C21 H21 12.3 0.0
C21 C23 C24 H23 208.6 214.2
C24 C23 C22 H22 353.8 0.0
C24 C23 C22 H22A 212.9 215.0
C22 C23 C24 H23 145.6 145.6
H24 C24 C23 H24A 118.3 120.0
C2' C3' C4' F7' 179.5 180.0
C4' C3' C2' H2' 179.8 180.0
C3' C4' C5' C6' 0.1 0.2
C5' C4' C3' H4' 180.0 180.1
C3' C4' C5' H5' 180.1 180.0
C2' C3' F7' C4' 180.5 180.0
F7' C3' C2' H2' 359.2 360.0
F7' C3' C4' C5' 180.2 180.0
F7' C3' C4' H4' 0.2 359.9
C1' C6' C5' C4' 0.6 359.5
C5' C4' C3' F7' 180.2 180.0
C3' C4' C5' H4' 180.0 179.9
C6' C5' C4' H5' 180.0 180.3
C4' C5' C6' H6' 180.7 180.0
C1' C6' C5' H6' 180.0 179.5
C6' C5' C4' H4' 180.1 180.3
C4' C5' C6' H5' 180.0 179.7
H02 C02 N01 C05 181.1 180.0
N01 C02 H02 N03 180.0 180.1
H02 C02 N03 C04 178.6 180.0
H02 C02 N03 C12 2.1 0.1
H04 C04 N03 C12 357.6 0.0
N03 C04 H04 C05 180.0 179.9
H04 C04 C05 H05 359.7 360.0
N01 C05 H05 C04 180.0 180.0
H05 C05 C04 H04 359.7 360.0
N13 C14 H14 C15 180.0 180.0
H14 C14 C15 C16 179.7 180.0
H14 C14 C15 H15 359.7 360.0
C14 C15 H15 C16 180.0 180.0
H15 C15 C14 H14 359.7 360.0
H15 C15 C16 C17 359.2 0.0
C16 C17 H17 C18 239.5 240.1
C16 C17 H17 H17A 119.8 120.0
H17 C17 C18 N19 67.7 60.0
C18 C17 H17 H17A 240.2 239.9
H17 C17 C18 H18 187.7 180.0
H17 C17 C18 H18A 307.7 300.1
C16 C17 H17A C18 120.5 119.9
C16 C17 H17A H17 240.2 240.0
H17A C17 C18 N19 307.8 299.9
C18 C17 H17A H17 119.8 120.0
H17A C17 C18 H18 67.9 59.9
H17A C17 C18 H18A 187.8 180.0
C17 C18 H18 N19 239.9 240.1
H18 C18 C17 H17 187.7 180.0
H18 C18 C17 H17A 67.9 59.9
C17 C18 H18 H18A 119.9 120.0
H18 C18 N19 C21 169.7 60.0
N19 C18 H18 H18A 240.0 239.9
H18 C18 N19 HN19 289.9 184.0
C17 C18 H18A N19 120.1 119.9
H18A C18 C17 H17 307.7 300.1
H18A C18 C17 H17A 187.8 180.0
C17 C18 H18A H18 240.1 240.0
H18A C18 N19 C21 49.8 299.9
N19 C18 H18A H18 120.0 120.1
H18A C18 N19 HN19 169.9 63.9
C18 N19 HN19 C21 239.1 236.0
HN19 N19 C18 H18 289.9 184.0
HN19 N19 C18 H18A 169.9 63.9
HN19 N19 C21 C22 352.7 12.3
HN19 N19 C21 C23 56.7 81.0
HN19 N19 C21 H21 207.2 226.8
H2' C2' C1' C24 358.8 0.0
H2' C2' C1' C6' 181.0 179.8
C1' C2' H2' C3' 180.0 179.9
H2' C2' C3' C4' 179.8 180.0
H2' C2' C3' F7' 359.2 360.0
N19 C21 H21 C22 141.7 145.6
N19 C21 H21 C23 212.0 214.3
H21 C21 N19 HN19 207.2 226.8
C22 C21 H21 C23 70.3 68.7
H21 C21 C22 C23 250.7 252.4
H21 C21 C22 H22 0.2 359.9
H21 C21 C22 H22A 141.1 145.0
H21 C21 C23 C22 109.5 107.5
H21 C21 C23 C24 12.3 0.0
H21 C21 C23 H23 220.8 214.9
H22 C22 C21 C23 109.6 107.5
C21 C22 H22 C23 289.2 291.4
H22 C22 C21 H21 0.2 359.9
C21 C22 H22 H22A 144.6 145.8
H22 C22 C23 C24 353.8 0.0
C23 C22 H22 H22A 215.4 214.3
H22 C22 C23 H23 139.5 145.0
H22A C22 C21 C23 250.4 252.5
C21 C22 H22A C23 70.9 68.6
H22A C22 C21 H21 141.1 145.0
C21 C22 H22A H22 215.5 214.2
H22A C22 C23 C24 212.9 215.0
C23 C22 H22A H22 144.6 145.7
H22A C22 C23 H23 358.5 0.0
C21 C23 H23 C22 287.8 291.4
C21 C23 H23 C24 147.7 145.8
H23 C23 C21 H21 220.8 214.9
C22 C23 H23 C24 220.0 214.4
H23 C23 C22 H22 139.5 145.0
H23 C23 C22 H22A 358.5 0.0
H23 C23 C24 H24 226.4 210.7
H23 C23 C24 H24A 108.1 90.7
H24 C24 C1' C6' 356.9 30.3
C1' C24 H24 C23 234.9 240.0
C1' C24 H24 H24A 117.4 120.0
H24 C24 C23 H23 226.4 210.7
C23 C24 H24 H24A 242.6 240.0
H24A C24 C1' C6' 115.3 150.3
C1' C24 H24A C23 125.1 119.9
C1' C24 H24A H24 242.6 240.0
H24A C24 C23 H23 108.1 90.7
C23 C24 H24A H24 117.4 120.0
H4' C4' C3' F7' 0.2 359.9
C3' C4' H4' C5' 180.0 180.1
H4' C4' C5' C6' 180.1 180.3
H4' C4' C5' H5' 0.1 0.0
C4' C5' H5' C6' 180.0 180.3
H5' C5' C4' H4' 0.1 0.0
H5' C5' C6' H6' 0.7 0.3
C1' C6' H6' C5' 180.0 180.5
H6' C6' C5' H5' 0.7 0.3