PDB Chemical Component K5D

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for K5D

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C10	C11	1.390	1.382
C10	C09	1.415	1.382
C11	C12	1.397	1.384
C09	C08	1.405	1.388
C12	BR1	2.000	1.891
C12	C14	1.456	1.381
C08	C14	1.447	1.387
C08	O07	1.495	1.359
O07	C06	1.476	1.429
C06	C05	1.612	1.507
C05	O15	1.203	1.213
C05	N04	1.484	1.348
N04	C03	1.487	1.465
C16	C03	1.504	1.549
C16	C17	1.550	1.542
C03	C02	1.542	1.549
C17	C19	1.396	1.530
C17	C18	1.421	1.538
C02	C18	1.535	1.542
C02	O01	1.382	1.429
C19	C18	1.400	1.530
C10	H1	1.081	1.081
C17	H2	1.100	1.090
C02	H3	1.100	1.090
C03	H4	1.101	1.090
C06	H5	1.100	1.090
C06	H6	1.101	1.090
C09	H7	1.080	1.079
C11	H8	1.080	1.079
C14	H9	1.080	1.080
C16	H10	1.100	1.090
C16	H11	1.100	1.091
C18	H12	1.100	1.090
C19	H13	1.100	1.090
C19	H14	1.100	1.090
N04	H15	1.000	0.970
O01	H16	0.950	0.967

Bond Angles for K5D

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C09	C10	C11	121.7	120.1
C10	C11	C12	118.2	120.1
C11	C10	H1	119.2	119.9
C10	C11	H8	120.9	119.9
C10	C09	C08	124.8	119.9
C09	C10	H1	119.1	119.9
C10	C09	H7	117.6	120.1
C11	C12	BR1	114.0	120.0
C11	C12	C14	119.0	120.1
C12	C11	H8	120.9	120.0
C09	C08	C14	112.0	119.9
C09	C08	O07	117.2	120.0
C14	C12	BR1	127.0	120.0
C08	C14	C12	124.2	119.9
C12	C14	H9	117.9	120.1
C14	C08	O07	130.6	120.1
C08	C14	H9	117.9	120.0
O07	C06	H5	104.9	109.5
O07	C06	H6	104.9	109.5
C06	C05	O15	126.2	120.0
C06	C05	N04	118.8	120.0
N04	C05	O15	114.8	120.0
C05	N04	H15	111.7	120.0
N04	C03	H4	102.5	110.6
C16	C03	H4	102.4	110.8
C16	C17	C19	168.7	118.2
C16	C17	C18	109.4	106.6
C16	C17	H2	91.2	117.7
C03	C02	C18	105.2	104.2
C03	C02	O01	116.6	110.5
C03	C02	H3	106.6	110.5
C18	C17	C19	59.6	59.8
C17	C19	C18	61.1	60.4
C19	C17	H2	91.3	119.3
C17	C19	H13	119.8	117.4
C17	C19	H14	119.8	117.5
C17	C18	C02	108.0	106.6
C18	C17	H2	91.3	121.4
C17	C18	H12	90.1	121.3
C18	C02	O01	112.5	110.5
C18	C02	H3	106.8	110.5
C02	C18	H12	90.1	117.4
O01	C02	H3	108.7	110.4
C02	O01	H16	109.5	114.0
C19	C18	H12	90.1	119.7
H5	C06	H6	109.5	109.5
H10	C16	H11	109.5	110.6
H13	C19	H14	109.5	115.6

Torsion Angles for K5D

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C11	C10	C09	C08	0.4	0.0
C09	C10	C11	H1	180.0	179.6
C11	C10	C09	H7	180.4	180.0
C10	C11	C12	BR1	180.2	180.0
C10	C11	C12	C14	359.2	0.1
C12	C11	C10	H8	180.0	180.0
C09	C10	C11	C12	359.7	359.9
C11	C10	C09	H1	180.0	180.4
C09	C10	C11	H8	179.7	180.0
C10	C09	C08	C14	0.6	0.0
C10	C09	C08	O07	177.4	179.9
C12	C11	C10	H1	179.7	180.3
C10	C11	C12	H8	180.0	180.0
C14	C12	C11	BR1	179.0	180.1
C08	C14	C12	C11	2.0	360.0
C11	C12	C14	H9	182.1	179.9
C08	C09	C10	C11	0.4	0.0
C08	C09	C10	H1	180.4	179.7
C10	C09	C08	H7	180.0	180.0
C09	C08	C14	C12	358.2	360.0
C14	C08	C09	O07	183.2	180.1
C09	C08	C14	H9	178.2	180.0
C11	C12	BR1	C14	178.9	180.1
BR1	C12	C11	H8	0.2	360.0
C08	C14	C12	BR1	180.9	180.1
BR1	C12	C14	H9	0.9	0.0
C11	C12	C14	BR1	181.2	179.9
C14	C12	C11	H8	179.2	180.0
C12	C14	C08	O07	181.9	180.0
C08	C14	C12	H9	180.0	180.1
C11	C12	C14	C08	2.0	360.0
C09	C08	C14	O07	176.2	179.9
C12	C14	C08	H9	180.0	179.9
C09	C08	O07	C14	183.9	180.1
O07	C08	C14	C12	181.9	180.0
O07	C08	C14	H9	1.9	0.1
C08	O07	C06	H5	302.6	60.0
C08	O07	C06	H6	58.0	300.0
O07	C06	C05	O15	298.1	359.9
H5	C06	O07	H6	244.6	120.0
N04	C05	C06	O15	185.3	180.1
C06	C05	N04	H15	0.3	359.9
C06	C05	O15	N04	185.1	180.1
O15	C05	N04	H15	185.0	180.0
C06	C05	N04	O15	175.3	179.9
C05	N04	C03	H4	151.2	31.7
C16	C03	N04	H4	247.8	236.6
N04	C03	C02	O01	42.4	37.7
N04	C03	C02	H3	280.9	275.2
N04	C03	C16	H4	112.3	123.3
C03	C16	C17	C19	30.9	87.8
C03	C16	C17	C18	19.8	23.6
C03	C16	C17	H2	288.0	243.2
C16	C03	C02	C18	27.6	37.9
C16	C03	C02	O01	262.2	279.2
C16	C03	C02	H3	140.7	156.7
C18	C17	C16	C19	348.9	295.8
C16	C17	C19	C18	347.8	266.4
C19	C17	C16	H2	102.9	204.6
C16	C17	C19	H13	97.6	13.9
C16	C17	C19	H14	238.1	158.8
C16	C17	C18	C02	357.6	360.0
C18	C17	C16	H2	91.8	140.4
C16	C17	C18	H12	267.5	221.9
C17	C18	C02	C03	344.4	336.4
C18	C02	C03	O01	125.4	118.7
C18	C02	C03	H3	246.9	241.3
C03	C02	C18	H12	74.5	116.4
O01	C02	C03	H3	121.5	122.5
C03	C02	O01	H16	180.0	294.8
C16	C17	C19	H2	257.1	155.0
C19	C17	C18	C02	180.1	246.6
C18	C17	C19	H2	269.2	248.7
C19	C17	C18	H12	90.0	108.5
C17	C19	C18	H12	269.9	248.9
H13	C19	C17	H14	219.6	215.2
C16	C17	C18	C19	177.5	113.4
C16	C17	C18	H2	268.3	221.4
C03	C02	C18	C17	344.4	336.4
C18	C17	C19	C18	-0.0	360.0
C19	C17	C18	H2	90.8	108.0
C18	C17	C19	H13	109.8	107.6
C18	C17	C19	H14	250.2	252.4
C17	C18	C02	O01	112.3	95.1
C17	C18	C02	H3	231.4	217.6
C02	C18	C17	H12	90.1	138.1
C19	C18	C17	H12	270.0	251.5
C03	C02	C18	O01	232.1	241.3
C03	C02	C18	H3	113.1	118.8
C02	C18	C17	C19	180.1	246.6
C17	C19	C18	C02	0.6	93.6
C02	C18	C17	H2	89.4	138.6
C17	C18	C02	H12	269.9	220.0
O01	C02	C18	H3	240.9	237.5
C18	C02	O01	H16	58.4	180.0
C19	C18	C02	H12	269.4	155.8
C03	C02	O01	C18	121.6	114.8
C03	C02	O01	H3	239.6	237.4
C18	C02	O01	H3	118.0	122.6
O01	C02	C18	H12	202.4	235.1
C18	C19	C17	H2	90.8	111.3
C17	C19	C18	H13	109.8	107.6
C17	C19	C18	H14	250.3	252.4
C19	C18	C17	H2	269.2	252.0
C17	C18	C19	H12	90.1	111.1
C19	C18	C02	O01	111.8	30.9
C19	C18	C02	H3	230.9	153.4
C02	C18	C19	H12	90.6	204.8
C09	C10	H1	C11	180.0	180.4
H1	C10	C11	C12	179.7	180.3
H1	C10	C11	H8	359.7	0.3
H1	C10	C09	C08	180.4	179.7
H1	C10	C09	H7	0.4	359.6
C16	C17	H2	C19	169.0	204.9
C16	C17	H2	C18	109.4	134.3
C18	C17	H2	C19	59.6	70.5
H2	C17	C19	C18	90.8	111.3
H2	C17	C19	H13	200.5	218.9
H2	C17	C19	H14	341.0	3.7
H2	C17	C18	C02	89.4	138.6
H2	C17	C18	H12	359.3	0.6
C03	C02	H3	C18	247.9	245.2
C03	C02	H3	O01	126.4	122.6
C18	C02	H3	O01	238.5	237.4
H3	C02	C18	H12	321.5	357.6
H3	C02	O01	H16	300.5	57.4
H4	C03	C02	C18	281.2	279.6
H4	C03	C02	O01	155.9	160.9
H4	C03	C02	H3	34.3	38.3
O07	C06	H5	H6	112.2	240.0
H5	C06	C05	O15	175.9	120.0
H5	C06	C05	N04	1.1	300.1
O07	C06	H6	H5	247.8	120.0
H6	C06	C05	O15	60.5	240.0
H6	C06	C05	N04	245.7	60.1
H7	C09	C10	C11	180.4	180.0
C10	C09	H7	C08	180.0	180.0
H7	C09	C10	H1	0.4	359.6
H7	C09	C08	C14	180.6	180.0
H7	C09	C08	O07	357.4	360.0
C10	C11	H8	C12	180.0	180.0
H8	C11	C10	H1	359.7	0.3
H8	C11	C12	BR1	0.2	360.0
H8	C11	C12	C14	179.2	180.0
H9	C14	C12	BR1	0.9	0.0
C08	C14	H9	C12	180.0	179.9
H9	C14	C08	O07	1.9	0.1
H10	C16	C03	H4	196.8	321.7
H10	C16	C17	C19	271.7	206.5
H10	C16	C17	C18	260.6	142.3
H10	C16	C17	H2	168.8	1.9
H11	C16	C03	H4	318.4	199.1
H11	C16	C17	C19	150.1	329.2
H11	C16	C17	C18	139.0	265.0
H11	C16	C17	H2	47.1	124.6
H12	C18	C17	C19	90.0	108.5
C17	C18	H12	C02	108.0	133.8
H12	C18	C17	H2	359.3	0.6
H12	C18	C02	O01	202.4	235.1
H12	C18	C02	H3	321.5	357.6
C17	C19	H13	C18	288.3	291.0
H13	C19	C17	H2	200.5	218.9
C17	C19	H13	H14	144.1	145.5
H13	C19	C18	H12	160.2	141.3
C17	C19	H14	C18	71.7	69.0
H14	C19	C17	H2	341.0	3.7
C17	C19	H14	H13	215.9	214.5
H14	C19	C18	H12	19.7	356.5
H15	N04	C05	O15	185.0	180.0
H15	N04	C03	H4	331.2	211.8
H16	O01	C02	H3	300.5	57.4