PDB Chemical Component K5C

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for K5C

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C34 C33 1.532 1.530
C34 C18 1.532 1.532
C33 N21 1.519 1.468
N17 C18 1.471 1.465
N17 C16 1.394 1.387
N35 C16 1.369 1.316
N35 C36 1.357 1.353
N21 C22 1.502 1.469
N21 C20 1.553 1.469
C18 C19 1.476 1.532
C37 C36 1.457 1.404
C37 C38 1.360 1.324
C24 C25 1.390 1.382
C24 C23 1.414 1.382
C16 N15 1.359 1.327
C22 C23 1.492 1.506
C36 C40 1.408 1.397
C19 C20 1.475 1.530
C25 C26 1.408 1.382
C23 C32 1.390 1.383
N28 S27 1.662 1.656
C38 S39 1.729 1.756
N15 C14 1.323 1.326
C40 C14 1.372 1.403
C40 S39 1.694 1.758
C26 S27 1.758 1.762
C26 C31 1.408 1.382
C32 C31 1.404 1.382
C14 O13 1.345 1.355
S27 O29 1.426 1.422
S27 O30 1.421 1.420
O13 C12 1.387 1.358
C11 C10 1.514 1.507
C12 C10 1.406 1.390
C12 C02 1.425 1.391
C10 C09 1.399 1.376
C01 C02 1.522 1.506
C02 C03 1.413 1.377
C09 C04 1.397 1.400
C03 C04 1.414 1.400
C04 C05 1.501 1.470
C05 C06 1.358 1.349
C06 C07 1.383 1.432
C07 N08 1.183 1.136
C01 H1 1.100 1.090
C01 H2 1.100 1.090
C01 H3 1.100 1.090
C03 H4 1.080 1.079
C05 H5 1.080 1.080
C06 H6 1.080 1.080
C09 H7 1.080 1.080
C11 H8 1.100 1.090
C11 H9 1.100 1.090
C11 H10 1.100 1.090
C18 H11 1.100 1.089
C19 H12 1.100 1.090
C19 H13 1.100 1.090
C20 H14 1.100 1.089
C20 H15 1.100 1.090
C22 H16 1.100 1.090
C22 H17 1.100 1.090
C24 H18 1.080 1.080
C25 H19 1.079 1.080
C31 H20 1.080 1.080
C32 H21 1.079 1.080
C33 H22 1.100 1.090
C33 H23 1.100 1.090
C34 H24 1.100 1.091
C34 H25 1.099 1.090
C37 H26 1.080 1.079
C38 H27 1.080 1.080
N17 H28 1.000 0.970
N28 H30 1.000 0.970
N28 H31 1.000 0.970

Bond Angles for K5C

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C34 C33 N21 110.4 109.5
C34 C33 H22 109.2 109.5
C34 C33 H23 109.3 109.5
C34 C18 H11 107.1 109.5
N21 C33 H22 109.3 109.5
N21 C33 H23 109.2 109.5
N17 C18 H11 107.8 109.6
N21 C22 H16 108.9 109.4
N21 C22 H17 108.9 109.5
N21 C20 H14 109.3 109.4
N21 C20 H15 109.3 109.4
C18 C19 C20 110.9 109.3
C19 C18 H11 107.8 109.5
C18 C19 H12 109.1 109.5
C18 C19 H13 109.1 109.4
C37 C36 C40 111.9 112.5
C37 C38 S39 111.7 110.8
C38 C37 H26 124.0 122.1
C37 C38 H27 124.2 124.7
C24 C25 C26 124.6 120.0
C25 C24 H18 119.5 120.0
C24 C25 H19 117.7 120.0
C24 C23 C32 116.6 120.0
C22 C23 C32 126.1 120.0
C23 C22 H16 108.9 109.5
C23 C22 H17 108.9 109.5
C36 C40 S39 110.8 109.5
C20 C19 H12 109.1 109.5
C20 C19 H13 109.1 109.5
C19 C20 H14 109.3 109.5
C19 C20 H15 109.3 109.5
C25 C26 S27 122.3 120.0
C25 C26 C31 112.3 120.0
C26 C25 H19 117.7 120.0
C23 C32 C31 120.5 120.0
C23 C32 H21 119.7 120.0
C26 S27 N28 107.6 107.2
N28 S27 O29 106.8 106.4
N28 S27 O30 108.5 106.4
S27 N28 H30 109.5 120.0
S27 N28 H31 109.5 120.0
C38 S39 C40 93.6 91.5
S39 C38 H27 124.2 124.6
N15 C14 O13 115.9 120.5
C40 C14 O13 120.6 120.5
C31 C26 S27 125.4 120.0
C26 S27 O29 110.8 106.4
C26 S27 O30 108.9 106.4
C26 C31 H20 117.5 120.0
C32 C31 H20 117.5 120.0
C10 C09 H7 118.3 120.1
C01 C02 C03 124.3 119.9
C02 C01 H1 109.5 109.5
C02 C01 H2 109.5 109.5
C02 C01 H3 109.4 109.5
C02 C03 C04 124.1 119.9
C02 C03 H4 118.0 120.1
C03 C04 C05 125.7 120.1
C04 C03 H4 117.9 120.0
C04 C05 C06 128.4 120.0
C04 C05 H5 115.8 120.0
C05 C06 C07 119.6 120.0
C06 C05 H5 115.8 120.0
C05 C06 H6 120.2 120.0
C06 C07 N08 179.0 180.0
C07 C06 H6 120.2 120.0
H1 C01 H2 109.5 109.5
H1 C01 H3 109.5 109.5
H2 C01 H3 109.5 109.4
H8 C11 H9 109.5 109.5
H8 C11 H10 109.5 109.5
H9 C11 H10 109.5 109.5
H12 C19 H13 109.5 109.5
H14 C20 H15 109.5 109.5
H16 C22 H17 109.5 109.4
H22 C33 H23 109.5 109.4
H24 C34 H25 109.5 109.6
H30 N28 H31 109.4 120.0

Torsion Angles for K5C

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C33 C34 C18 H11 298.1 297.8
N21 C33 C34 H22 239.8 240.0
N21 C33 C34 H23 120.2 120.0
H22 C33 C34 H23 240.3 240.0
N17 C18 C34 H11 244.0 239.8
C19 C18 C34 H11 118.7 119.9
C34 C18 C19 H12 60.2 62.3
C34 C18 C19 H13 179.7 182.4
C34 C33 N21 H22 120.1 120.0
C34 C33 N21 H23 239.8 240.0
C33 N21 C22 H16 281.1 50.0
C33 N21 C22 H17 40.4 290.0
C33 N21 C20 H14 67.5 178.2
C33 N21 C20 H15 187.3 58.2
H22 C33 N21 H23 119.7 119.9
C34 C18 N17 H11 115.5 120.2
C19 C18 N17 H11 241.4 239.8
N17 C18 C19 H12 297.0 302.3
N17 C18 C19 H13 56.6 62.4
N35 C36 C40 S39 180.4 180.0
C22 N21 C20 H14 305.1 54.1
C22 N21 C20 H15 65.0 294.1
C23 C22 N21 H16 239.7 120.0
C23 C22 N21 H17 120.3 240.0
H16 C22 N21 H17 240.7 120.0
N21 C20 C19 H12 295.3 299.2
N21 C20 C19 H13 175.7 179.1
C19 C20 N21 H14 239.9 120.0
C19 C20 N21 H15 120.1 240.0
H14 C20 N21 H15 240.2 120.0
C34 C18 C19 H11 241.7 240.1
N17 C18 C19 H11 118.6 120.2
C20 C19 C18 H12 239.8 240.0
C20 C19 C18 H13 120.2 119.9
C18 C19 C20 H14 295.4 179.2
C18 C19 C20 H15 175.6 299.2
H12 C19 C18 H13 240.4 239.9
C37 C36 C40 S39 359.9 0.0
C38 C37 C36 C40 0.5 360.0
C37 C38 S39 C40 0.6 0.0
S39 C38 C37 H27 180.0 180.0
C25 C24 C23 C32 0.1 0.3
C24 C25 C26 S27 179.9 180.0
C24 C25 C26 C31 359.7 0.0
C26 C25 C24 H19 180.0 180.0
C22 C23 C24 C32 179.6 179.7
C24 C23 C22 H16 210.9 30.3
C24 C23 C22 H17 91.5 150.3
C24 C23 C32 C31 359.8 359.5
C24 C23 C32 H21 179.8 179.7
C16 N15 C14 O13 179.6 180.0
N21 C22 C23 H16 120.3 240.0
N21 C22 C23 H17 239.7 120.0
C24 C23 C22 C32 180.5 180.3
C22 C23 C32 C31 180.3 179.8
C22 C23 C32 H21 0.3 360.0
H16 C22 C23 H17 119.4 240.0
C38 S39 C40 C36 359.7 360.0
C36 C40 C14 O13 180.3 180.0
N21 C20 C19 H14 120.1 240.0
N21 C20 C19 H15 239.9 120.0
C20 C19 C18 H11 58.2 62.2
C18 C19 C20 H12 120.2 120.0
C18 C19 C20 H13 239.8 240.1
H12 C19 C20 H13 119.5 120.1
H14 C20 C19 H15 119.8 239.9
C26 C25 C24 H18 180.2 180.0
C24 C25 C26 H19 180.0 180.0
C25 C26 S27 N28 316.6 90.0
C31 C26 C25 S27 179.8 180.0
C25 C26 S27 O29 73.0 203.5
C25 C26 S27 O30 199.1 336.4
C25 C26 C31 H20 180.2 179.9
C32 C23 C22 H16 30.4 210.0
C32 C23 C22 H17 271.1 330.0
C23 C32 C31 H20 180.0 180.3
C31 C26 S27 N28 136.8 270.0
C26 S27 N28 O29 119.1 113.5
C26 S27 N28 O30 242.3 246.4
H30 N28 S27 H31 240.0 180.0
S39 C38 C37 H26 179.3 180.0
C37 C38 S39 H27 180.0 180.0
C36 C40 S39 C38 359.7 360.0
C40 C14 N15 O13 180.3 179.8
N15 C14 C40 O13 179.7 180.2
C40 S39 C38 H27 180.6 180.0
S39 C40 C14 O13 360.0 360.0
C25 C26 S27 C31 179.8 180.0
S27 C26 C25 H19 359.9 360.0
N28 S27 C26 O29 243.6 246.5
N28 S27 C26 O30 117.5 113.6
C26 S27 N28 H30 180.0 150.0
C26 S27 N28 H31 300.0 330.0
S27 C26 C31 H20 0.0 360.0
C25 C26 C31 S27 180.2 180.0
C31 C26 C25 H19 179.7 180.0
C23 C32 C31 C26 0.0 0.4
C31 C26 S27 O29 253.2 23.5
C31 C26 S27 O30 19.3 156.4
C32 C31 C26 H20 180.0 179.9
C23 C32 C31 H21 180.0 180.2
C32 C31 C26 S27 180.0 179.8
C26 C31 C32 H20 180.0 180.1
C26 S27 O29 N28 243.1 245.9
N28 S27 O29 O30 240.2 237.0
O29 S27 N28 H30 61.0 36.5
O29 S27 N28 H31 180.9 216.5
C26 S27 O29 O30 123.2 123.0
C26 S27 O30 N28 116.9 114.1
N28 S27 O30 O29 118.9 122.9
O30 S27 N28 H30 297.7 263.6
O30 S27 N28 H31 57.7 83.6
C26 S27 O30 O29 235.7 237.1
C11 C10 C09 H7 359.7 0.0
C12 C10 C09 H7 180.1 179.7
C12 C02 C01 H1 90.0 269.7
C12 C02 C01 H2 210.0 29.7
C12 C02 C01 H3 330.0 149.7
C12 C02 C03 H4 179.7 180.3
C01 C02 C03 C04 179.6 180.0
C01 C02 C03 H4 359.6 360.0
H1 C01 C02 H2 240.0 240.0
H1 C01 C02 H3 120.0 120.1
H2 C01 C02 H3 240.0 240.1
C03 C02 C01 H1 270.1 90.0
C03 C02 C01 H2 30.1 210.0
C03 C02 C01 H3 150.0 330.0
C02 C03 C04 C05 181.6 180.0
C04 C03 C02 H4 180.0 180.0
C09 C04 C03 H4 179.1 180.0
C09 C04 C05 H5 127.0 180.0
C02 C03 C04 H4 180.0 180.0
C03 C04 C05 C06 124.4 180.0
C03 C04 C05 H5 304.4 359.9
C05 C04 C03 H4 1.6 0.1
C04 C05 C06 C07 181.3 180.0
C06 C05 C04 H5 180.0 180.1
C04 C05 C06 H6 1.3 360.0
C04 C05 C06 H5 180.0 179.9
C05 C06 C07 N08 153.8 329.1
C07 C06 C05 H6 180.0 180.1
C07 C06 C05 H5 1.3 0.1
C05 C06 C07 H6 180.0 179.9
N08 C07 C06 H6 333.8 149.2
H1 C01 C02 C03 270.1 90.0
C02 C01 H1 H2 120.0 120.0
C02 C01 H1 H3 240.0 240.0
H2 C01 H1 H3 120.0 120.0
H2 C01 C02 C03 30.1 210.0
C02 C01 H2 H1 240.0 240.0
C02 C01 H2 H3 119.9 119.9
H1 C01 H2 H3 240.0 240.0
H3 C01 C02 C03 150.0 330.0
C02 C01 H3 H1 120.0 120.0
C02 C01 H3 H2 240.0 240.0
H1 C01 H3 H2 120.0 120.0
C02 C03 H4 C04 180.0 180.0
H4 C03 C04 C05 1.6 0.1
C04 C05 H5 C06 180.0 180.1
H5 C05 C06 C07 1.3 0.1
H5 C05 C06 H6 181.3 180.0
C05 C06 H6 C07 180.0 180.1
H6 C06 C05 H5 181.3 180.0
H6 C06 C07 N08 333.8 149.2
H9 C11 H8 H10 120.0 120.1
H8 C11 H9 H10 240.0 239.9
H8 C11 H10 H9 120.0 120.1
H11 C18 C19 C20 58.2 62.2
H11 C18 C19 H12 178.4 182.2
H11 C18 C19 H13 298.0 302.3
C18 C19 H12 C20 238.7 240.2
H12 C19 C18 H11 178.4 182.2
C18 C19 H12 H13 119.3 120.0
C20 C19 H12 H13 240.7 239.9
H12 C19 C20 H14 175.2 59.2
H12 C19 C20 H15 55.4 179.3
C18 C19 H13 C20 121.4 119.8
H13 C19 C18 H11 298.0 302.3
C18 C19 H13 H12 240.7 239.9
C20 C19 H13 H12 119.3 120.1
H13 C19 C20 H14 55.6 299.1
H13 C19 C20 H15 295.8 59.1
N21 C20 H14 H15 119.7 240.0
H14 C20 C19 H12 175.2 59.2
H14 C20 C19 H13 55.6 299.1
C19 C20 H14 H15 240.3 120.0
N21 C20 H15 H14 240.3 120.0
H15 C20 C19 H12 55.4 179.3
H15 C20 C19 H13 295.8 59.1
C19 C20 H15 H14 119.7 240.0
N21 C22 H16 H17 119.0 240.0
H16 C22 C23 C32 30.4 210.0
C23 C22 H16 H17 241.0 120.0
N21 C22 H17 H16 241.0 120.0
H17 C22 C23 C32 271.1 330.0
C23 C22 H17 H16 119.0 240.0
H18 C24 C25 C26 180.2 180.0
H18 C24 C25 H19 0.2 0.0
H18 C24 C23 C32 180.0 180.2
C24 C25 H19 C26 180.0 180.0
H19 C25 C24 H18 0.2 0.0
H19 C25 C26 S27 359.9 360.0
H19 C25 C26 C31 179.7 180.0
H20 C31 C26 S27 0.0 360.0
C23 C32 H21 C31 180.0 179.8
H21 C32 C31 H20 0.0 0.1
C34 C33 H22 N21 239.1 239.9
C34 C33 H22 H23 119.6 120.0
N21 C33 H22 H23 240.4 240.0
C34 C33 H23 N21 120.9 120.1
C34 C33 H23 H22 240.5 240.0
N21 C33 H23 H22 119.6 120.0
H24 C34 C33 N21 69.9 180.9
H24 C34 C33 H22 190.0 300.9
H24 C34 C33 H23 309.7 60.9
H24 C34 C18 H11 178.0 57.7
H25 C34 C33 N21 189.6 60.7
H25 C34 C33 H22 309.8 180.8
H25 C34 C33 H23 69.5 300.7
H25 C34 C18 H11 58.2 177.8
H26 C37 C36 C40 180.5 180.0
H26 C37 C38 S39 179.3 180.0
H26 C37 C38 H27 359.3 0.0
C37 C38 H27 S39 180.0 180.0
H27 C38 C37 H26 359.3 0.0
H27 C38 S39 C40 180.6 180.0
H28 N17 C18 H11 163.9 145.2
H30 N28 S27 O29 61.0 36.5
H30 N28 S27 O30 297.7 263.6
S27 N28 H30 H31 120.0 180.0
H31 N28 S27 O29 180.9 216.5
H31 N28 S27 O30 57.7 83.6
S27 N28 H31 H30 240.0 180.0