Atom Nomenclature for K3G

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for K3G

Atom Name (V3) Atom Name (V2)
MO1 MO1
MO2 MO2
MO3 MO3
MO4 MO4
MO5 MO5
MO6 MO6
MO7 MO7
MO8 MO8
MO9 MO9
MO10 MO10
MO11 MO11
MO12 MO12
P1 P1
O1 O1
O2 O2
O3 O3
O4 O4
O5 O5
O6 O6
O7 O7
O8 O8
O9 O9
O10 O10
O11 O11
O12 O12
O13 O13
O14 O14
O15 O15
O16 O16
O17 O17
O18 O18
O19 O19
O20 O20
O21 O21
O22 O22
O23 O23
O24 O24
O25 O25
O26 O26
O27 O27
O28 O28
O29 O29
O30 O30
O31 O31
O32 O32
O33 O33
O34 O34
O35 O35
O36 O36
O37 O37
O38 O38
O39 O39
O40 O40