PDB Chemical Component K1Y
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for K1Y
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C10 |
C9 |
1.401 |
1.384 |
| C10 |
C11 |
1.409 |
1.380 |
| C9 |
C8 |
1.398 |
1.383 |
| C11 |
C6 |
1.419 |
1.395 |
| C4 |
C3 |
1.467 |
1.507 |
| N1 |
C3 |
1.306 |
1.290 |
| N1 |
C5 |
1.418 |
1.325 |
| C8 |
C7 |
1.400 |
1.380 |
| C6 |
C7 |
1.431 |
1.395 |
| C6 |
C5 |
1.498 |
1.481 |
| C3 |
S |
1.718 |
1.760 |
| C5 |
C2 |
1.410 |
1.355 |
| C2 |
S |
1.766 |
1.763 |
| C2 |
N |
1.415 |
1.394 |
| N |
C1 |
1.404 |
1.348 |
| C1 |
O1 |
1.227 |
1.215 |
| C1 |
O |
1.410 |
1.346 |
| O |
C |
1.444 |
1.452 |
| C4 |
H1 |
1.100 |
1.091 |
| C4 |
H2 |
1.100 |
1.090 |
| C4 |
H3 |
1.100 |
1.090 |
| C7 |
H4 |
1.080 |
1.080 |
| C8 |
H5 |
1.080 |
1.080 |
| C10 |
H6 |
1.080 |
1.079 |
| N |
H7 |
1.000 |
0.970 |
| C |
H8 |
1.100 |
1.090 |
| C |
H9 |
1.100 |
1.089 |
| C |
H10 |
1.100 |
1.090 |
| C11 |
H11 |
1.080 |
1.079 |
| C9 |
H12 |
1.080 |
1.080 |
Bond Angles for K1Y
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C11 |
C10 |
C9 |
121.3 |
120.1 |
| C9 |
C10 |
H6 |
119.4 |
119.9 |
| C10 |
C9 |
H12 |
120.1 |
119.9 |
| C11 |
C10 |
H6 |
119.4 |
119.9 |
| C10 |
C11 |
H11 |
120.2 |
120.1 |
| C9 |
C8 |
H5 |
120.0 |
120.0 |
| N1 |
C3 |
C4 |
123.6 |
125.1 |
| C4 |
C3 |
S |
120.0 |
125.2 |
| C3 |
C4 |
H1 |
109.5 |
109.5 |
| C3 |
C4 |
H2 |
109.5 |
109.4 |
| C3 |
C4 |
H3 |
109.5 |
109.5 |
| C5 |
N1 |
C3 |
111.7 |
117.2 |
| N1 |
C3 |
S |
116.4 |
109.6 |
| N1 |
C5 |
C2 |
113.0 |
115.1 |
| C8 |
C7 |
H4 |
119.5 |
120.1 |
| C6 |
C7 |
H4 |
119.4 |
120.0 |
| C6 |
C5 |
C2 |
129.1 |
122.5 |
| C2 |
S |
C3 |
89.5 |
90.0 |
| C5 |
C2 |
S |
109.5 |
108.0 |
| C5 |
C2 |
N |
124.6 |
126.0 |
| C2 |
N |
H7 |
117.5 |
120.0 |
| N |
C1 |
O1 |
126.6 |
120.0 |
| N |
C1 |
O |
110.1 |
120.0 |
| C1 |
N |
H7 |
117.5 |
120.0 |
| O |
C |
H8 |
109.5 |
109.5 |
| O |
C |
H9 |
109.5 |
109.5 |
| O |
C |
H10 |
109.5 |
109.5 |
| H1 |
C4 |
H2 |
109.5 |
109.5 |
| H1 |
C4 |
H3 |
109.5 |
109.4 |
| H2 |
C4 |
H3 |
109.4 |
109.5 |
| H8 |
C |
H9 |
109.4 |
109.4 |
| H8 |
C |
H10 |
109.5 |
109.4 |
| H9 |
C |
H10 |
109.5 |
109.5 |
Torsion Angles for K1Y
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C11 |
C10 |
C9 |
H6 |
180.0 |
180.8 |
| C9 |
C10 |
C11 |
H11 |
179.8 |
180.0 |
| C10 |
C9 |
C8 |
H5 |
179.7 |
179.5 |
| C9 |
C10 |
C11 |
H6 |
180.0 |
179.2 |
| C11 |
C10 |
C9 |
H12 |
180.6 |
180.0 |
| C9 |
C8 |
C7 |
H4 |
179.6 |
180.0 |
| C11 |
C6 |
C7 |
H4 |
180.7 |
180.2 |
| C11 |
C6 |
C5 |
C2 |
219.0 |
324.7 |
| C5 |
N1 |
C3 |
C4 |
182.7 |
180.0 |
| N1 |
C3 |
C4 |
S |
177.6 |
180.0 |
| C2 |
S |
C3 |
C4 |
177.0 |
180.0 |
| H1 |
C4 |
C3 |
H2 |
240.0 |
240.0 |
| H1 |
C4 |
C3 |
H3 |
120.0 |
120.0 |
| H2 |
C4 |
C3 |
H3 |
240.0 |
240.0 |
| C4 |
C3 |
N1 |
S |
182.3 |
180.0 |
| N1 |
C3 |
C4 |
H1 |
360.0 |
90.0 |
| N1 |
C3 |
C4 |
H2 |
120.0 |
210.0 |
| N1 |
C3 |
C4 |
H3 |
240.0 |
330.0 |
| C3 |
N1 |
C5 |
C2 |
0.2 |
0.1 |
| C2 |
S |
C3 |
N1 |
359.3 |
0.0 |
| C5 |
N1 |
C3 |
S |
0.4 |
359.9 |
| C6 |
C5 |
N1 |
C2 |
181.6 |
180.0 |
| N1 |
C5 |
C2 |
S |
359.3 |
359.9 |
| N1 |
C5 |
C2 |
N |
178.8 |
180.0 |
| C6 |
C7 |
C8 |
H4 |
180.0 |
180.0 |
| C8 |
C7 |
C6 |
H4 |
180.0 |
180.0 |
| C7 |
C6 |
C5 |
C2 |
38.5 |
145.0 |
| C6 |
C5 |
N1 |
C3 |
181.8 |
180.0 |
| N1 |
C5 |
C6 |
C2 |
178.1 |
180.0 |
| C6 |
C5 |
C2 |
S |
177.4 |
180.0 |
| C6 |
C5 |
C2 |
N |
356.9 |
0.0 |
| N1 |
C3 |
S |
C4 |
182.2 |
180.0 |
| S |
C3 |
C4 |
H1 |
182.4 |
270.0 |
| S |
C3 |
C4 |
H2 |
302.4 |
30.0 |
| S |
C3 |
C4 |
H3 |
62.4 |
150.0 |
| C5 |
C2 |
S |
C3 |
0.8 |
0.0 |
| C2 |
C5 |
N1 |
C3 |
0.2 |
0.1 |
| C5 |
C2 |
N |
H7 |
8.4 |
360.0 |
| C4 |
C3 |
S |
C2 |
177.0 |
180.0 |
| N1 |
C3 |
S |
C2 |
359.3 |
0.0 |
| C5 |
C2 |
S |
N |
179.5 |
180.1 |
| S |
C2 |
N |
H7 |
187.9 |
180.0 |
| C5 |
C2 |
N |
S |
180.6 |
179.9 |
| C2 |
N |
C1 |
O1 |
357.9 |
359.9 |
| C1 |
N |
C2 |
H7 |
180.0 |
180.0 |
| C5 |
C2 |
N |
C1 |
188.4 |
180.0 |
| C2 |
N |
C1 |
H7 |
180.0 |
180.0 |
| N |
C1 |
O1 |
O |
181.7 |
180.1 |
| O1 |
C1 |
N |
H7 |
177.9 |
180.0 |
| N |
C1 |
O |
O1 |
178.6 |
179.9 |
| O |
C1 |
N |
H7 |
359.4 |
0.0 |
| C1 |
O |
C |
H8 |
180.0 |
300.0 |
| C1 |
O |
C |
H9 |
300.0 |
59.9 |
| C1 |
O |
C |
H10 |
60.0 |
180.0 |
| N |
C1 |
O |
C |
179.0 |
180.0 |
| H8 |
C |
O |
H9 |
240.0 |
240.0 |
| H8 |
C |
O |
H10 |
120.0 |
120.0 |
| H9 |
C |
O |
H10 |
240.0 |
239.9 |
| H1 |
C4 |
C3 |
S |
182.4 |
270.0 |
| C3 |
C4 |
H1 |
H2 |
120.0 |
120.0 |
| C3 |
C4 |
H1 |
H3 |
240.0 |
239.9 |
| H2 |
C4 |
H1 |
H3 |
120.0 |
120.0 |
| H2 |
C4 |
C3 |
S |
302.4 |
30.0 |
| C3 |
C4 |
H2 |
H1 |
240.0 |
240.0 |
| C3 |
C4 |
H2 |
H3 |
120.0 |
120.1 |
| H1 |
C4 |
H2 |
H3 |
240.0 |
240.0 |
| H3 |
C4 |
C3 |
S |
62.4 |
150.0 |
| C3 |
C4 |
H3 |
H1 |
120.0 |
120.0 |
| C3 |
C4 |
H3 |
H2 |
240.0 |
240.0 |
| H1 |
C4 |
H3 |
H2 |
120.0 |
120.0 |
| H5 |
C8 |
C7 |
H4 |
359.6 |
0.0 |
| C11 |
C10 |
H6 |
C9 |
180.0 |
179.2 |
| H6 |
C10 |
C9 |
H12 |
0.5 |
359.2 |
| H6 |
C10 |
C11 |
H11 |
359.8 |
0.8 |
| H7 |
N |
C1 |
O1 |
177.9 |
180.0 |
| H7 |
N |
C1 |
O |
359.4 |
0.0 |
| O |
C |
H8 |
H9 |
120.0 |
120.0 |
| O |
C |
H8 |
H10 |
240.0 |
240.0 |
| H9 |
C |
H8 |
H10 |
120.0 |
120.0 |
| O |
C |
H9 |
H8 |
240.0 |
240.0 |
| O |
C |
H9 |
H10 |
120.0 |
120.1 |
| H8 |
C |
H9 |
H10 |
240.0 |
240.0 |
| O |
C |
H10 |
H8 |
120.0 |
120.0 |
| O |
C |
H10 |
H9 |
240.0 |
239.9 |
| H8 |
C |
H10 |
H9 |
120.0 |
120.0 |
| H11 |
C11 |
C10 |
C9 |
179.8 |
180.0 |
| H11 |
C11 |
C10 |
H6 |
359.8 |
0.8 |
| H12 |
C9 |
C10 |
H6 |
0.5 |
359.2 |
| H12 |
C9 |
C8 |
H5 |
359.7 |
0.2 |