Atom Nomenclature for K02

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for K02

Atom Name (V3) Atom Name (V2)
O1 O1
C13 C13
C14 C14
S2 S2
C15 C15
C16 C16
C17 C17
N2 N2
C12 C12
S1 S1
C6 C6
C5 C5
C11 C11
C9 C9
C10 C10
C8 C8
C7 C7
C4 C4
C3 C3
O2 O2
N1 N1
C2 C2
C1 C1
C18 C18
C19 C19
H2 H2
H17 H17
H15 H15
H16 H16
H7C1 1H7C
H7C2 2H7C
H111 1H11
H112 2H11
H9 H9
H101 1H10
H102 2H10
H103 3H10
H8C1 1H8C
H8C2 2H8C
H2C1 1H2C
H2C2 2H2C
H181 1H18
H182 2H18
H1C1 1H1C
H1C2 2H1C
H1C3 3H1C
H191 1H19
H192 2H19
H193 3H19