PDB Chemical Component JZU

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for JZU

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
S N18 1.503 1.657
S O2S 1.461 1.421
S O3S 1.479 1.421
S N5' 1.536 1.656
N1 C2 1.340 1.320
N1 C6 1.361 1.329
C2 N3 1.359 1.317
N3 C4 1.357 1.329
C4 C5 1.385 1.405
C4 N9 1.325 1.372
C5 C6 1.485 1.406
C5 N7 1.345 1.354
C6 N6 1.340 1.383
N7 C8 1.343 1.301
C8 N9 1.348 1.363
N9 C1' 1.500 1.465
C1' C2' 1.507 1.550
C1' O4' 1.437 1.444
C2' O2' 1.436 1.430
C2' C3' 1.523 1.548
C3' O3' 1.421 1.429
C3' C4' 1.518 1.541
C4' O4' 1.454 1.438
C4' C5' 1.513 1.530
C5' N5' 1.429 1.465
C2 H2 1.080 1.080
N6 HN6 0.999 0.969
N6 HN6A 1.000 0.970
C8 H8 1.080 1.080
C1' H1' 1.100 1.090
N18 HN18 1.000 0.970
N18 HN1A 1.000 0.970
C2' H2' 1.099 1.090
O2' HO2' 0.950 0.967
C3' H3' 1.100 1.090
O3' HO3' 0.950 0.967
C4' H4' 1.100 1.089
C5' H5' 1.100 1.090
C5' H5'A 1.100 1.090
N5' HN5' 1.000 0.970

Bond Angles for JZU

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
N18 S O2S 104.5 106.4
N18 S O3S 111.2 106.4
N18 S N5' 110.7 107.2
S N18 HN18 109.5 120.0
S N18 HN1A 109.5 120.0
O2S S O3S 111.4 123.1
O2S S N5' 114.2 106.4
O3S S N5' 104.9 106.4
S N5' C5' 118.1 120.0
S N5' HN5' 106.7 120.0
C2 N1 C6 118.9 121.2
N1 C2 N3 123.5 122.5
N1 C2 H2 118.2 118.8
N1 C6 C5 119.3 118.4
N1 C6 N6 123.1 120.8
C2 N3 C4 120.8 120.6
N3 C2 H2 118.2 118.8
N3 C4 C5 119.6 119.1
N3 C4 N9 133.1 134.9
C5 C4 N9 107.3 106.0
C4 C5 C6 117.7 118.2
C4 C5 N7 110.0 107.1
C4 N9 C8 106.4 107.4
C4 N9 C1' 126.5 126.2
C6 C5 N7 132.3 134.7
C5 C6 N6 117.6 120.8
C5 N7 C8 103.9 109.4
C6 N6 HN6 109.5 120.0
C6 N6 HN6A 109.5 120.0
N7 C8 N9 112.5 110.0
N7 C8 H8 123.7 125.0
C8 N9 C1' 127.0 126.3
N9 C8 H8 123.8 125.0
N9 C1' C2' 109.1 110.6
N9 C1' O4' 115.5 110.6
N9 C1' H1' 103.9 110.6
C2' C1' O4' 103.5 103.5
C1' C2' O2' 114.5 110.9
C1' C2' C3' 106.0 102.1
C2' C1' H1' 115.8 110.7
C1' C2' H2' 110.8 111.0
C1' O4' C4' 108.4 107.0
O4' C1' H1' 109.4 110.8
O2' C2' C3' 115.5 110.9
O2' C2' H2' 100.2 110.8
C2' O2' HO2' 109.5 114.0
C2' C3' O3' 115.2 110.5
C2' C3' C4' 102.7 104.2
C3' C2' H2' 109.7 110.9
C2' C3' H3' 110.5 110.5
O3' C3' C4' 110.2 110.5
O3' C3' H3' 103.1 110.4
C3' O3' HO3' 109.5 114.0
C3' C4' O4' 108.3 107.2
C3' C4' C5' 105.8 109.9
C4' C3' H3' 115.6 110.6
C3' C4' H4' 112.7 109.9
O4' C4' C5' 109.8 109.9
O4' C4' H4' 108.9 109.9
C4' C5' N5' 102.8 109.5
C5' C4' H4' 111.2 110.0
C4' C5' H5' 111.8 109.5
C4' C5' H5'A 111.8 109.5
N5' C5' H5' 111.7 109.5
N5' C5' H5'A 111.8 109.5
C5' N5' HN5' 106.7 120.0
HN6 N6 HN6A 109.5 120.0
HN18 N18 HN1A 109.4 120.1
H5' C5' H5'A 107.1 109.5

Torsion Angles for JZU

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
O2S S N18 O3S 239.7 227.1
O2S S N18 N5' 123.4 113.5
O3S S N18 N5' 243.7 246.4
N18 S N5' C5' 74.0 65.0
N18 S N5' HN5' 194.0 245.0
HN18 N18 S HN1A 240.0 180.1
N18 S O2S O3S 120.2 123.0
N18 S O2S N5' 238.9 245.9
O2S S N18 HN18 180.0 113.6
O2S S N18 HN1A 300.0 293.5
O3S S O2S N5' 118.6 123.0
O2S S N5' C5' 316.4 311.5
O2S S N5' HN5' 76.4 131.5
N18 S O3S O2S 243.8 237.1
N18 S O3S N5' 119.8 114.1
O3S S N18 HN18 300.3 246.5
O3S S N18 HN1A 60.3 66.4
O2S S O3S N5' 236.0 237.1
O3S S N5' C5' 194.1 178.6
O3S S N5' HN5' 314.1 358.6
N18 S N5' O2S 117.6 113.5
N18 S N5' O3S 239.9 246.4
N5' S N18 HN18 56.6 0.0
N5' S N18 HN1A 176.6 180.0
O2S S N5' O3S 122.2 132.9
C4' C5' N5' S 149.9 165.0
S N5' C5' H5' 29.9 45.0
S N5' C5' H5'A 269.9 285.0
C5' N5' S HN5' 240.0 180.0
C2 N1 C6 C5 359.1 0.0
C2 N1 C6 N6 178.2 180.0
N1 C2 N3 C4 0.2 360.0
N3 C2 N1 H2 180.0 180.1
C6 N1 C2 N3 0.3 360.0
C6 N1 C2 H2 180.3 179.9
C4 C5 C6 N1 1.1 360.0
N1 C6 C5 N7 181.3 180.0
C5 C6 N1 N6 181.0 180.1
N1 C6 N6 HN6 360.0 0.1
N1 C6 N6 HN6A 120.0 180.0
N3 C2 N1 C6 0.3 360.0
N1 C2 N3 H2 180.0 179.9
C2 N3 C4 C5 0.0 0.0
C2 N3 C4 N9 178.4 180.0
C4 N3 C2 H2 180.2 180.1
C5 C4 N3 N9 181.6 180.1
N3 C4 C5 C6 359.4 0.0
N3 C4 C5 N7 179.2 180.0
N3 C4 N9 C8 179.9 180.1
N3 C4 N9 C1' 2.6 0.0
N1 C6 C5 C4 1.1 360.0
N3 C4 C5 N9 178.8 179.9
C5 C4 N9 C8 358.4 360.0
C5 C4 N9 C1' 181.2 180.0
C6 C5 C4 N7 180.1 180.0
C4 C5 C6 N6 182.0 180.1
C4 C5 N7 C8 0.8 360.0
N3 C4 N9 C5 181.5 180.1
N9 C4 C5 C6 180.6 180.1
N9 C4 C5 N7 0.5 0.0
N7 C8 N9 C4 2.2 360.0
C8 N9 C4 C1' 177.3 180.0
C4 N9 C8 H8 182.2 180.1
C4 N9 C1' C2' 126.1 85.0
C4 N9 C1' O4' 242.1 199.0
C4 N9 C1' H1' 2.0 322.1
N1 C6 C5 N6 179.1 179.9
C6 C5 C4 N9 180.6 180.1
C4 C5 C6 N7 179.8 179.9
C6 C5 N7 C8 180.7 179.9
C5 C6 N6 HN6 179.0 180.0
C5 C6 N6 HN6A 299.1 359.9
N7 C5 C4 N9 0.5 0.0
C4 C5 N7 C6 180.2 180.0
N7 C5 C6 N6 2.2 0.1
C5 N7 C8 N9 358.1 0.0
C5 N7 C8 H8 178.1 179.9
N1 C6 N6 C5 180.9 180.1
N6 C6 C5 N7 2.2 0.1
HN6 N6 C6 HN6A 240.0 180.1
C4 N9 C8 N7 2.2 360.0
N7 C8 N9 C1' 179.5 180.0
N9 C8 N7 H8 180.0 180.1
C4 N9 C8 C1' 182.8 180.0
N7 C8 N9 H8 180.0 179.9
C8 N9 C1' C2' 309.4 265.0
C8 N9 C1' O4' 65.4 19.0
C8 N9 C1' H1' 185.3 142.1
C4 N9 C1' C8 176.7 180.0
C1' N9 C8 H8 359.5 0.1
C2' C1' N9 O4' 243.9 246.0
N9 C1' C2' O2' 285.4 273.7
N9 C1' C2' C3' 156.8 155.5
C2' C1' N9 H1' 124.1 122.9
N9 C1' C2' H2' 37.8 37.2
N9 C1' O4' C4' 209.9 201.4
O4' C1' N9 H1' 240.1 236.9
N9 C1' C2' O4' 123.5 118.4
N9 C1' C2' H1' 243.3 237.1
C2' C1' O4' C4' 329.1 319.9
O4' C1' C2' H1' 119.8 118.7
O2' C2' C1' C3' 128.5 118.2
O2' C2' C1' H2' 247.5 236.4
C1' C2' O2' HO2' 180.0 180.0
C1' C2' C3' O3' 97.1 97.8
C1' C2' C3' C4' 337.2 339.1
C3' C2' C1' H2' 119.0 118.2
C1' C2' C3' H3' 213.4 220.3
N9 C1' O4' C2' 240.8 241.6
N9 C1' O4' H1' 116.8 123.0
O4' C1' C2' O2' 161.9 155.2
O4' C1' C2' C3' 33.3 37.1
C2' C1' O4' H1' 236.0 241.4
O4' C1' C2' H2' 274.3 278.8
C3' C4' O4' C1' 16.9 26.6
C1' O4' C4' C5' 132.0 145.9
C1' O4' C4' H4' 254.0 267.1
O2' C2' C1' O4' 161.9 155.2
C1' C2' O2' C3' 236.4 247.3
O2' C2' C1' H1' 42.1 36.6
C1' C2' O2' H2' 118.6 123.7
O2' C2' C3' O3' 329.1 339.6
O2' C2' C3' C4' 209.2 221.0
C3' C2' O2' H2' 242.2 236.4
O2' C2' C3' H3' 85.4 102.1
C3' C2' C1' O4' 33.3 37.1
C1' C2' C3' O2' 128.0 118.2
C3' C2' C1' H1' 273.6 278.4
C1' C2' C3' H2' 240.3 241.7
O2' C2' C3' H2' 112.3 123.6
C3' C2' O2' HO2' 303.6 292.7
O3' C3' C2' C4' 119.9 118.6
O3' C3' C2' H3' 243.7 237.5
C2' C3' O3' HO3' 180.0 61.5
C2' C3' C4' O4' 4.3 357.9
C2' C3' C4' C5' 246.6 238.6
C4' C3' C2' H3' 123.8 118.8
C2' C3' C4' H4' 124.8 117.4
C2' C3' O3' C4' 244.4 245.2
O3' C3' C2' H2' 216.8 216.0
C2' C3' O3' H3' 120.5 122.6
O3' C3' C4' O4' 241.0 239.3
O3' C3' C4' C5' 123.3 119.9
C4' C3' O3' H3' 236.1 237.3
O3' C3' C4' H4' 1.5 358.7
C1' O4' C4' C3' 16.9 26.6
C2' C3' C4' O3' 123.3 118.7
C4' C3' C2' H2' 96.9 97.4
C2' C3' C4' H3' 239.6 241.2
O3' C3' C4' H3' 116.3 122.6
C4' C3' O3' HO3' 295.6 176.3
O4' C4' C3' C5' 117.7 119.4
O4' C4' C3' H4' 239.4 240.6
C3' C4' C5' N5' 262.2 185.0
C5' C4' C3' H4' 121.8 121.2
C3' C4' C5' H5' 22.2 304.9
C3' C4' C5' H5'A 142.2 65.0
C4' O4' C1' H1' 93.1 78.5
C3' C4' O4' C5' 244.9 240.6
O4' C4' C3' H3' 124.7 116.7
C3' C4' O4' H4' 122.9 119.5
O4' C4' C5' N5' 145.6 67.2
C5' C4' O4' H4' 237.9 238.8
O4' C4' C5' H5' 265.6 187.2
O4' C4' C5' H5'A 25.6 307.2
S N5' C5' C4' 149.9 165.0
C3' C4' C5' O4' 116.6 117.8
C5' C4' C3' H3' 7.0 357.3
C3' C4' C5' H4' 237.3 238.9
O4' C4' C5' H4' 120.7 121.1
N5' C5' C4' H5' 240.0 240.0
N5' C5' C4' H5'A 120.0 120.0
C4' C5' N5' HN5' 30.0 344.9
H5' C5' C4' H5'A 240.0 240.0
S N5' C5' HN5' 120.0 180.0
N5' C5' C4' H4' 24.9 306.1
C4' C5' N5' H5' 120.0 120.0
C4' C5' N5' H5'A 240.0 240.0
H5' C5' N5' H5'A 120.0 120.0
H2 C2 N1 C6 180.3 179.9
N1 C2 H2 N3 180.0 180.1
H2 C2 N3 C4 180.2 180.1
C6 N6 HN6 HN6A 120.0 179.9
C6 N6 HN6A HN6 240.0 180.1
N7 C8 H8 N9 180.0 180.1
H8 C8 N9 C1' 359.5 0.1
N9 C1' H1' C2' 119.6 122.9
N9 C1' H1' O4' 236.1 237.1
C2' C1' H1' O4' 116.5 114.1
H1' C1' C2' O2' 42.1 36.6
H1' C1' C2' C3' 273.6 278.4
H1' C1' C2' H2' 154.6 160.1
H1' C1' O4' C4' 93.1 78.5
HN18 N18 S O2S 180.0 113.6
HN18 N18 S O3S 300.3 246.5
HN18 N18 S N5' 56.6 0.0
S N18 HN18 HN1A 120.0 179.9
HN1A N18 S O2S 300.0 293.5
HN1A N18 S O3S 60.3 66.4
HN1A N18 S N5' 176.6 180.0
S N18 HN1A HN18 240.0 180.1
H2' C2' C1' O4' 274.3 278.8
C1' C2' H2' O2' 238.7 236.4
C1' C2' H2' C3' 116.7 112.7
H2' C2' C1' H1' 154.6 160.1
O2' C2' H2' C3' 238.1 236.4
H2' C2' O2' HO2' 61.4 56.3
H2' C2' C3' O3' 216.8 216.0
H2' C2' C3' C4' 96.9 97.4
H2' C2' C3' H3' 333.1 338.5
HO2' O2' C2' C3' 303.6 292.7
HO2' O2' C2' H2' 61.4 56.3
C2' C3' H3' O3' 236.3 237.5
C2' C3' H3' C4' 116.0 114.9
H3' C3' C2' H2' 333.1 338.5
O3' C3' H3' C4' 239.7 237.4
H3' C3' O3' HO3' 59.5 298.9
H3' C3' C4' O4' 124.7 116.7
H3' C3' C4' C5' 7.0 357.3
H3' C3' C4' H4' 245.2 236.2
HO3' O3' C3' C4' 295.6 176.3
HO3' O3' C3' H3' 59.5 298.9
C3' C4' H4' O4' 239.8 242.2
C3' C4' H4' C5' 118.7 121.1
H4' C4' C3' H3' 245.2 236.2
O4' C4' H4' C5' 238.8 238.9
H4' C4' C5' N5' 24.9 306.1
H4' C4' C5' H5' 144.9 66.1
H4' C4' C5' H5'A 264.9 186.1
C4' C5' H5' N5' 245.4 240.0
H5' C5' C4' H4' 144.9 66.1
C4' C5' H5' H5'A 122.7 120.0
N5' C5' H5' H5'A 237.3 240.0
H5' C5' N5' HN5' 270.0 225.0
C4' C5' H5'A N5' 114.6 120.0
H5'A C5' C4' H4' 264.9 186.1
C4' C5' H5'A H5' 237.3 240.0
N5' C5' H5'A H5' 122.7 120.0
H5'A C5' N5' HN5' 150.0 105.0
S N5' HN5' C5' 232.9 180.0
HN5' N5' C5' H5' 270.0 225.0
HN5' N5' C5' H5'A 150.0 105.0