PDB Chemical Component JVJ
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for JVJ
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N16 |
C15 |
1.510 |
1.468 |
| N16 |
C17 |
1.550 |
1.469 |
| C15 |
C14 |
1.575 |
1.531 |
| C17 |
C18 |
1.567 |
1.530 |
| C14 |
C13 |
1.542 |
1.531 |
| C18 |
C13 |
1.550 |
1.531 |
| C13 |
C12 |
1.541 |
1.530 |
| C12 |
O11 |
1.475 |
1.429 |
| O11 |
C10 |
1.390 |
1.356 |
| C10 |
N19 |
1.375 |
1.324 |
| C10 |
C9 |
1.367 |
1.393 |
| N19 |
C20 |
1.439 |
1.329 |
| C9 |
N8 |
1.351 |
1.319 |
| C22 |
C23 |
1.422 |
1.377 |
| C22 |
C21 |
1.459 |
1.395 |
| C23 |
C24 |
1.426 |
1.395 |
| C20 |
C21 |
1.520 |
1.481 |
| C20 |
C7 |
1.394 |
1.404 |
| C29 |
O28 |
1.432 |
1.341 |
| C29 |
C25 |
1.442 |
1.358 |
| C21 |
C31 |
1.450 |
1.396 |
| N8 |
C7 |
1.335 |
1.329 |
| C7 |
C6 |
1.437 |
1.482 |
| C24 |
C25 |
1.494 |
1.484 |
| C24 |
C30 |
1.475 |
1.394 |
| O28 |
C27 |
1.450 |
1.342 |
| C25 |
C26 |
1.416 |
1.467 |
| C31 |
C30 |
1.439 |
1.377 |
| C6 |
C32 |
1.436 |
1.395 |
| C6 |
C5 |
1.382 |
1.395 |
| C27 |
C26 |
1.411 |
1.344 |
| C32 |
C33 |
1.430 |
1.379 |
| C5 |
C4 |
1.449 |
1.380 |
| C33 |
C3 |
1.401 |
1.384 |
| C4 |
C3 |
1.433 |
1.384 |
| C3 |
C2 |
1.504 |
1.507 |
| C2 |
N1 |
1.498 |
1.470 |
| N1 |
H1 |
1.000 |
1.009 |
| N1 |
H2 |
1.000 |
1.010 |
| C2 |
H4 |
1.100 |
1.090 |
| C2 |
H5 |
1.100 |
1.090 |
| C33 |
H6 |
1.080 |
1.080 |
| C32 |
H7 |
1.080 |
1.080 |
| C5 |
H8 |
1.079 |
1.080 |
| C4 |
H9 |
1.080 |
1.080 |
| C31 |
H10 |
1.080 |
1.080 |
| C30 |
H11 |
1.080 |
1.080 |
| C29 |
H12 |
1.080 |
1.079 |
| C27 |
H13 |
1.080 |
1.079 |
| C26 |
H14 |
1.080 |
1.081 |
| C23 |
H15 |
1.080 |
1.079 |
| C22 |
H16 |
1.080 |
1.079 |
| C9 |
H17 |
1.080 |
1.079 |
| C12 |
H18 |
1.100 |
1.090 |
| C12 |
H19 |
1.100 |
1.090 |
| C13 |
H20 |
1.100 |
1.090 |
| C18 |
H21 |
1.100 |
1.090 |
| C18 |
H22 |
1.100 |
1.090 |
| C17 |
H23 |
1.100 |
1.089 |
| C17 |
H24 |
1.100 |
1.089 |
| N16 |
H25 |
1.000 |
1.009 |
| C15 |
H27 |
1.100 |
1.090 |
| C15 |
H28 |
1.100 |
1.090 |
| C14 |
H29 |
1.100 |
1.090 |
| C14 |
H30 |
1.100 |
1.090 |
Bond Angles for JVJ
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N16 |
C15 |
C14 |
113.3 |
109.6 |
| C15 |
N16 |
H25 |
108.0 |
111.0 |
| N16 |
C15 |
H27 |
108.5 |
109.5 |
| N16 |
C15 |
H28 |
108.5 |
109.5 |
| N16 |
C17 |
H23 |
109.0 |
109.5 |
| N16 |
C17 |
H24 |
109.0 |
109.5 |
| C14 |
C15 |
H27 |
108.5 |
109.4 |
| C14 |
C15 |
H28 |
108.5 |
109.4 |
| C15 |
C14 |
H29 |
109.3 |
109.4 |
| C15 |
C14 |
H30 |
109.3 |
109.5 |
| C17 |
C18 |
H21 |
109.3 |
109.5 |
| C17 |
C18 |
H22 |
109.3 |
109.6 |
| C14 |
C13 |
H20 |
108.0 |
109.5 |
| C18 |
C13 |
H20 |
107.9 |
109.6 |
| C13 |
C12 |
H18 |
109.8 |
109.5 |
| C13 |
C12 |
H19 |
109.8 |
109.4 |
| C10 |
C9 |
N8 |
118.9 |
120.3 |
| C10 |
C9 |
H17 |
120.5 |
119.9 |
| N8 |
C9 |
H17 |
120.5 |
119.9 |
| C22 |
C23 |
H15 |
121.2 |
120.0 |
| C20 |
C21 |
C31 |
120.6 |
120.0 |
| C29 |
O28 |
C27 |
106.0 |
110.8 |
| O28 |
C29 |
H12 |
126.9 |
125.8 |
| C29 |
C25 |
C26 |
111.8 |
105.8 |
| C21 |
C31 |
C30 |
117.9 |
120.0 |
| C21 |
C31 |
H10 |
121.1 |
120.0 |
| C24 |
C25 |
C26 |
125.1 |
127.1 |
| C24 |
C30 |
H11 |
120.5 |
120.0 |
| O28 |
C27 |
C26 |
111.7 |
108.9 |
| O28 |
C27 |
H13 |
124.1 |
125.5 |
| C25 |
C26 |
C27 |
104.4 |
106.1 |
| C25 |
C26 |
H14 |
127.8 |
127.0 |
| C30 |
C31 |
H10 |
121.0 |
120.0 |
| C31 |
C30 |
H11 |
120.5 |
120.0 |
| C6 |
C32 |
H7 |
120.5 |
120.0 |
| C6 |
C5 |
C4 |
116.8 |
119.9 |
| C6 |
C5 |
H8 |
121.6 |
120.0 |
| C26 |
C27 |
H13 |
124.2 |
125.5 |
| C27 |
C26 |
H14 |
127.8 |
127.0 |
| C32 |
C33 |
H6 |
120.8 |
120.0 |
| C4 |
C5 |
H8 |
121.6 |
120.1 |
| C5 |
C4 |
H9 |
119.9 |
119.9 |
| C3 |
C2 |
H4 |
109.1 |
109.5 |
| C3 |
C2 |
H5 |
109.1 |
109.4 |
| C2 |
N1 |
H1 |
109.5 |
111.0 |
| C2 |
N1 |
H2 |
109.5 |
110.9 |
| H1 |
N1 |
H2 |
109.5 |
111.1 |
| H4 |
C2 |
H5 |
109.5 |
109.5 |
| H18 |
C12 |
H19 |
109.4 |
109.5 |
| H21 |
C18 |
H22 |
109.5 |
109.5 |
| H23 |
C17 |
H24 |
109.5 |
109.5 |
| H27 |
C15 |
H28 |
109.4 |
109.4 |
| H29 |
C14 |
H30 |
109.4 |
109.6 |
Torsion Angles for JVJ
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C15 |
N16 |
C17 |
H23 |
169.5 |
301.8 |
| C15 |
N16 |
C17 |
H24 |
289.0 |
181.8 |
| C14 |
C15 |
N16 |
H27 |
239.4 |
240.0 |
| C14 |
C15 |
N16 |
H28 |
120.6 |
120.0 |
| N16 |
C15 |
C14 |
H29 |
170.4 |
299.2 |
| N16 |
C15 |
C14 |
H30 |
290.1 |
179.1 |
| H27 |
C15 |
N16 |
H28 |
241.2 |
240.0 |
| N16 |
C17 |
C18 |
H21 |
67.1 |
180.9 |
| N16 |
C17 |
C18 |
H22 |
187.0 |
60.8 |
| H23 |
C17 |
N16 |
H24 |
240.6 |
120.0 |
| C14 |
C15 |
N16 |
H25 |
72.9 |
62.4 |
| N16 |
C15 |
C14 |
H27 |
120.6 |
120.1 |
| N16 |
C15 |
C14 |
H28 |
239.4 |
239.9 |
| C15 |
C14 |
C13 |
H20 |
62.6 |
62.4 |
| H27 |
C15 |
C14 |
H28 |
118.8 |
119.8 |
| H29 |
C14 |
C15 |
H30 |
240.3 |
120.1 |
| C17 |
C18 |
C13 |
H20 |
299.5 |
297.8 |
| H21 |
C18 |
C17 |
H22 |
240.2 |
120.1 |
| C18 |
C13 |
C14 |
H20 |
241.0 |
240.1 |
| C14 |
C13 |
C12 |
H18 |
39.9 |
174.9 |
| C14 |
C13 |
C12 |
H19 |
160.3 |
54.9 |
| C14 |
C13 |
C18 |
H20 |
119.1 |
119.9 |
| C18 |
C13 |
C12 |
H18 |
275.5 |
55.1 |
| C18 |
C13 |
C12 |
H19 |
35.8 |
295.1 |
| H18 |
C12 |
C13 |
H19 |
239.7 |
120.0 |
| O11 |
C10 |
C9 |
H17 |
3.4 |
360.0 |
| N8 |
C9 |
C10 |
H17 |
180.0 |
179.8 |
| C10 |
C9 |
N8 |
H17 |
180.0 |
180.2 |
| C22 |
C21 |
C31 |
H10 |
178.4 |
180.2 |
| C23 |
C24 |
C30 |
H11 |
182.5 |
180.0 |
| C20 |
C21 |
C31 |
C30 |
183.3 |
180.0 |
| C20 |
C21 |
C31 |
H10 |
3.4 |
359.9 |
| O28 |
C29 |
C25 |
C26 |
1.1 |
0.3 |
| C29 |
O28 |
C27 |
C26 |
1.3 |
359.8 |
| C29 |
O28 |
C27 |
H13 |
181.3 |
180.0 |
| C24 |
C25 |
C29 |
C26 |
177.1 |
179.7 |
| C29 |
C25 |
C26 |
C27 |
359.7 |
359.5 |
| C29 |
C25 |
C26 |
H14 |
179.7 |
179.8 |
| C30 |
C31 |
C21 |
H10 |
180.0 |
180.0 |
| C21 |
C31 |
C30 |
H11 |
178.9 |
180.0 |
| C7 |
C6 |
C32 |
H7 |
359.1 |
0.1 |
| C7 |
C6 |
C5 |
H8 |
1.5 |
0.0 |
| C29 |
C25 |
C24 |
C26 |
183.3 |
180.3 |
| C25 |
C24 |
C30 |
H11 |
359.1 |
0.1 |
| C24 |
C25 |
C26 |
C27 |
182.7 |
179.8 |
| C24 |
C25 |
C26 |
H14 |
2.7 |
0.0 |
| C24 |
C30 |
C31 |
H10 |
178.9 |
180.1 |
| C31 |
C30 |
C24 |
H11 |
180.0 |
180.0 |
| C27 |
O28 |
C29 |
H12 |
178.6 |
180.0 |
| C25 |
C26 |
C27 |
O28 |
359.4 |
0.4 |
| C26 |
C27 |
O28 |
H13 |
180.0 |
179.8 |
| O28 |
C27 |
C26 |
H14 |
179.4 |
180.2 |
| O28 |
C27 |
C26 |
C25 |
359.4 |
0.4 |
| C25 |
C26 |
C27 |
H13 |
179.4 |
180.2 |
| C27 |
C26 |
C25 |
H14 |
180.0 |
179.8 |
| C21 |
C31 |
C30 |
H10 |
180.0 |
180.0 |
| C24 |
C30 |
C31 |
H11 |
180.0 |
180.0 |
| C6 |
C32 |
C33 |
H6 |
179.5 |
180.0 |
| C5 |
C6 |
C32 |
H7 |
178.4 |
180.1 |
| C4 |
C5 |
C6 |
H8 |
180.0 |
179.8 |
| C6 |
C5 |
C4 |
H9 |
179.0 |
180.1 |
| O28 |
C27 |
C26 |
H13 |
180.0 |
180.2 |
| C25 |
C26 |
C27 |
H14 |
180.0 |
180.2 |
| C6 |
C5 |
C4 |
H8 |
180.0 |
180.2 |
| C33 |
C3 |
C2 |
H4 |
290.5 |
330.0 |
| C33 |
C3 |
C2 |
H5 |
50.1 |
210.0 |
| C4 |
C3 |
C2 |
H4 |
112.2 |
149.8 |
| C4 |
C3 |
C2 |
H5 |
231.8 |
29.8 |
| C3 |
C2 |
N1 |
H1 |
180.0 |
56.0 |
| C3 |
C2 |
N1 |
H2 |
300.0 |
180.0 |
| H4 |
C2 |
C3 |
H5 |
240.4 |
120.0 |
| H1 |
N1 |
C2 |
H2 |
240.0 |
236.0 |
| C2 |
N1 |
H1 |
H2 |
120.0 |
123.9 |
| C2 |
N1 |
H2 |
H1 |
239.9 |
236.1 |
| C3 |
C2 |
H4 |
H5 |
119.4 |
240.0 |
| H4 |
C2 |
N1 |
H1 |
59.8 |
176.0 |
| H4 |
C2 |
N1 |
H2 |
179.8 |
300.0 |
| C3 |
C2 |
H5 |
H4 |
240.7 |
120.0 |
| H5 |
C2 |
N1 |
H1 |
300.2 |
296.1 |
| H5 |
C2 |
N1 |
H2 |
60.2 |
60.0 |
| H7 |
C32 |
C33 |
H6 |
359.6 |
359.9 |
| C6 |
C5 |
H8 |
C4 |
180.0 |
179.8 |
| H8 |
C5 |
C4 |
H9 |
359.0 |
359.9 |
| H9 |
C4 |
C5 |
H8 |
359.0 |
359.9 |
| C21 |
C31 |
H10 |
C30 |
180.0 |
180.0 |
| H10 |
C31 |
C30 |
H11 |
358.9 |
0.0 |
| H11 |
C30 |
C31 |
H10 |
358.9 |
0.0 |
| H12 |
C29 |
O28 |
C27 |
178.6 |
180.0 |
| H12 |
C29 |
C25 |
C26 |
181.1 |
180.2 |
| O28 |
C27 |
H13 |
C26 |
180.0 |
179.7 |
| H13 |
C27 |
C26 |
H14 |
359.4 |
360.0 |
| C25 |
C26 |
H14 |
C27 |
180.0 |
179.7 |
| H14 |
C26 |
C27 |
H13 |
359.4 |
360.0 |
| H16 |
C22 |
C23 |
H15 |
358.3 |
359.8 |
| C10 |
C9 |
H17 |
N8 |
180.0 |
179.8 |
| C13 |
C12 |
H18 |
H19 |
120.5 |
240.0 |
| C13 |
C12 |
H19 |
H18 |
239.5 |
120.0 |
| H20 |
C13 |
C12 |
H18 |
156.7 |
294.9 |
| H20 |
C13 |
C12 |
H19 |
277.1 |
174.9 |
| C17 |
C18 |
H21 |
H22 |
119.7 |
239.9 |
| H21 |
C18 |
C13 |
H20 |
179.4 |
57.7 |
| C17 |
C18 |
H22 |
H21 |
240.3 |
120.1 |
| H22 |
C18 |
C13 |
H20 |
59.5 |
177.7 |
| N16 |
C17 |
H23 |
H24 |
119.1 |
240.0 |
| H23 |
C17 |
C18 |
H21 |
306.8 |
300.9 |
| H23 |
C17 |
C18 |
H22 |
66.7 |
180.8 |
| N16 |
C17 |
H24 |
H23 |
240.9 |
120.0 |
| H24 |
C17 |
C18 |
H21 |
187.4 |
60.9 |
| H24 |
C17 |
C18 |
H22 |
307.3 |
300.8 |
| H25 |
N16 |
C15 |
C14 |
72.9 |
62.4 |
| H25 |
N16 |
C15 |
H27 |
193.5 |
182.4 |
| H25 |
N16 |
C15 |
H28 |
312.3 |
302.3 |
| H25 |
N16 |
C17 |
H23 |
48.7 |
177.6 |
| H25 |
N16 |
C17 |
H24 |
168.1 |
57.7 |
| N16 |
C15 |
H27 |
C14 |
236.5 |
239.9 |
| H27 |
C15 |
N16 |
H25 |
193.5 |
182.4 |
| N16 |
C15 |
H27 |
H28 |
118.2 |
120.0 |
| C14 |
C15 |
H27 |
H28 |
241.7 |
240.1 |
| H27 |
C15 |
C14 |
H29 |
49.8 |
179.2 |
| H27 |
C15 |
C14 |
H30 |
169.6 |
59.0 |
| N16 |
C15 |
H28 |
C14 |
123.5 |
120.1 |
| H28 |
C15 |
N16 |
H25 |
312.3 |
302.3 |
| N16 |
C15 |
H28 |
H27 |
241.8 |
240.0 |
| C14 |
C15 |
H28 |
H27 |
118.3 |
119.8 |
| H28 |
C15 |
C14 |
H29 |
291.0 |
59.3 |
| H28 |
C15 |
C14 |
H30 |
50.7 |
299.2 |
| H29 |
C14 |
C15 |
H27 |
49.8 |
179.2 |
| H29 |
C14 |
C15 |
H28 |
291.0 |
59.3 |
| C15 |
C14 |
H29 |
H30 |
119.6 |
239.9 |
| H29 |
C14 |
C13 |
H20 |
302.5 |
182.2 |
| H30 |
C14 |
C15 |
H27 |
169.6 |
59.0 |
| H30 |
C14 |
C15 |
H28 |
50.7 |
299.2 |
| C15 |
C14 |
H30 |
H29 |
240.4 |
120.0 |
| H30 |
C14 |
C13 |
H20 |
182.7 |
302.4 |