PDB Chemical Component JVH

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for JVH

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
O1	C2	1.200	1.213
O6	C5	1.228	1.213
C32	C34	1.559	1.569
C32	C38	1.562	1.558
C32	C30	1.552	1.558
C8	N7	1.446	1.465
C8	C9	1.502	1.507
C5	N7	1.345	1.348
C5	C4	1.485	1.506
C2	C30	1.504	1.512
C2	N3	1.320	1.338
C34	C35	1.546	1.569
C38	C37	1.598	1.546
C4	N3	1.439	1.465
C30	C28	1.575	1.555
C10	C9	1.383	1.382
C10	C11	1.377	1.384
N3	C26	1.327	1.338
C9	C25	1.384	1.383
C17	C11	1.516	1.509
C17	C16	1.555	1.533
C17	O19	1.462	1.437
C11	C12	1.408	1.386
C35	C37	1.567	1.560
C35	C28	1.545	1.558
C26	C28	1.522	1.511
C26	O27	1.200	1.212
C25	C24	1.380	1.380
C16	C14	1.541	1.535
O19	C20	1.440	1.432
C12	C24	1.390	1.391
C12	N13	1.418	1.399
C14	N13	1.481	1.466
C14	C21	1.529	1.527
C20	C21	1.544	1.530
C21	O23	1.426	1.429
C4	H1	1.100	1.090
C4	H2	1.100	1.090
C8	H3	1.101	1.090
C8	H4	1.100	1.090
N13	H5	1.000	0.969
C16	H6	1.100	1.090
C16	H7	1.100	1.089
C17	H8	1.100	1.090
C21	H9	1.100	1.090
C24	H10	1.080	1.080
C30	H11	1.100	1.089
C32	H12	1.100	1.091
C34	H13	1.100	1.090
C34	H14	1.099	1.090
C35	H15	1.100	1.090
C37	H16	1.100	1.090
C37	H17	1.100	1.090
C38	H18	1.100	1.090
C38	H19	1.100	1.090
N7	H20	1.000	0.969
C10	H21	1.080	1.079
C14	H22	1.100	1.090
C20	H23	1.100	1.090
C20	H24	1.100	1.090
O23	H25	0.950	0.967
C25	H26	1.081	1.080
C28	H27	1.100	1.091

Bond Angles for JVH

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
O1	C2	N3	122.2	125.3
O6	C5	N7	124.6	120.0
C34	C32	C38	101.2	100.7
C32	C34	C35	98.1	96.1
C34	C32	H12	116.5	116.2
C32	C34	H13	112.3	112.0
C32	C34	H14	112.2	112.0
C32	C38	C37	104.0	104.6
C38	C32	H12	116.5	116.4
C32	C38	H18	110.9	110.5
C32	C38	H19	110.9	110.4
C32	C30	C28	104.6	104.4
C32	C30	H11	111.2	113.6
N7	C8	C9	118.9	109.5
C5	N7	C8	122.9	120.0
N7	C8	H3	107.1	109.5
N7	C8	H4	107.1	109.5
C8	N7	H20	118.6	120.0
C8	C9	C25	118.6	120.0
C9	C8	H3	107.0	109.4
C9	C8	H4	107.1	109.5
C5	N7	H20	118.5	120.0
C5	C4	N3	119.9	109.5
C5	C4	H1	106.8	109.5
C5	C4	H2	106.8	109.5
C30	C2	N3	108.8	109.5
C2	C30	C28	105.5	103.3
C2	C30	H11	111.9	113.0
C2	N3	C4	120.2	122.7
C2	N3	C26	114.1	114.5
C34	C35	C37	101.1	100.7
C34	C35	C28	99.0	100.7
C35	C34	H13	112.2	112.0
C35	C34	H14	112.3	112.0
C34	C35	H15	115.9	116.2
C38	C37	H16	110.9	110.4
C38	C37	H17	110.9	110.5
C4	N3	C26	125.5	122.8
N3	C4	H1	106.8	109.5
N3	C4	H2	106.8	109.4
C30	C28	C35	104.1	104.5
C30	C28	C26	99.2	103.3
C28	C30	H11	110.9	113.2
C30	C28	H27	111.9	113.1
C10	C9	C25	121.1	120.1
N3	C26	C28	112.2	109.5
N3	C26	O27	123.2	125.2
C9	C25	H26	120.3	120.0
C17	C16	C14	108.4	108.1
C17	C16	H6	109.7	109.7
C17	C16	H7	109.7	109.8
C17	O19	C20	118.1	112.6
O19	C17	H8	111.2	111.1
C11	C12	C24	119.6	119.9
C11	C12	N13	121.4	120.9
C37	C35	C28	107.2	104.6
C37	C35	H15	115.5	115.9
C35	C37	H16	110.9	110.4
C35	C37	H17	110.9	110.4
C35	C28	C26	115.6	108.4
C28	C35	H15	115.9	116.5
C35	C28	H27	112.3	113.0
O27	C26	C28	124.6	125.3
C26	C28	H27	112.7	113.6
C25	C24	H10	119.9	120.0
C16	C14	C21	109.7	109.6
C14	C16	H6	109.7	109.7
C14	C16	H7	109.7	109.7
C16	C14	H22	108.8	109.5
O19	C20	H23	109.2	109.4
O19	C20	H24	109.2	109.5
N13	C12	C24	118.8	119.2
C12	C24	H10	119.9	120.0
C12	N13	H5	106.9	120.1
C14	N13	H5	106.9	120.2
C14	C21	O23	108.0	109.4
C14	C21	H9	108.6	109.4
C20	C21	O23	109.5	109.4
C20	C21	H9	108.4	109.2
O23	C21	H9	109.9	109.4
C21	O23	H25	109.5	114.0
H1	C4	H2	109.5	109.4
H3	C8	H4	109.4	109.4
H6	C16	H7	109.5	109.8
H13	C34	H14	109.5	111.8
H16	C37	H17	109.5	110.4
H18	C38	H19	109.4	110.4
H23	C20	H24	109.5	109.5

Torsion Angles for JVH

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C30	C2	O1	N3	176.4	179.7
O1	C2	C30	C28	178.4	180.2
O1	C2	C30	H11	57.7	57.5
O1	C2	N3	C4	356.3	359.8
O1	C2	N3	C26	179.9	179.8
O6	C5	N7	C8	0.6	360.0
O6	C5	N7	H20	180.6	179.9
O6	C5	C4	H1	83.3	120.1
O6	C5	C4	H2	200.4	240.1
C34	C32	C38	C37	328.1	326.2
C38	C32	C34	H12	232.6	233.3
C34	C32	C38	H18	87.2	85.0
C34	C32	C38	H19	209.0	207.4
C34	C32	C30	C28	29.0	33.7
C34	C32	C30	H11	148.8	157.6
C32	C34	C35	C37	306.5	306.5
C32	C34	C35	C28	56.2	53.7
C35	C34	C32	H13	241.9	243.3
C35	C34	C32	H14	118.1	116.7
C32	C34	C35	H15	180.8	180.5
H13	C34	C32	H14	236.2	233.4
C38	C32	C34	C35	53.0	53.6
C34	C32	C38	H12	127.4	126.5
C38	C32	C34	H13	171.1	170.3
C38	C32	C34	H14	294.9	296.9
C38	C32	C30	C28	284.9	289.6
C38	C32	C30	H11	44.6	53.4
C32	C38	C37	H16	118.2	241.3
C32	C38	C37	H17	240.1	118.9
H18	C38	C32	H19	238.3	237.5
C32	C30	C2	N3	108.5	110.3
C2	C30	C32	C28	246.1	250.4
C2	C30	C32	H11	126.4	126.6
C32	C30	C28	C35	5.3	0.1
C32	C30	C28	C26	245.9	246.8
C28	C30	C32	H11	240.3	236.2
C32	C30	C28	H27	126.8	123.4
N7	C8	C9	C25	309.1	89.9
C9	C8	N7	H3	238.7	240.0
C9	C8	N7	H4	121.4	120.1
C5	N7	C8	H20	180.0	179.9
H3	C8	N7	H4	242.7	240.0
C5	N7	C8	C9	127.0	180.0
N7	C8	C9	H3	121.4	120.0
N7	C8	C9	H4	238.6	239.9
C9	C8	N7	H20	307.0	0.1
C10	C9	C8	C25	182.7	180.2
C8	C9	C25	H26	4.0	0.4
H3	C8	C9	H4	117.3	119.9
C5	N7	C8	H3	248.3	300.0
C5	N7	C8	H4	5.6	59.9
C8	N7	C5	H20	180.0	180.1
N7	C5	C4	N3	146.2	180.0
N7	C5	C4	H1	267.7	300.0
N7	C5	C4	H2	24.8	60.0
C2	N3	C4	C5	111.3	90.0
C5	C4	N3	C26	287.2	270.0
N3	C4	C5	H1	238.5	240.0
N3	C4	C5	H2	121.5	120.0
H1	C4	C5	H2	242.9	240.0
O1	C2	C30	N3	183.2	180.3
C32	C30	C2	C28	113.3	110.4
C32	C30	C2	H11	234.0	233.1
C30	C2	N3	C4	179.2	180.1
C30	C2	N3	C26	2.9	0.0
C2	C30	C28	C35	124.0	113.4
C2	C30	C28	C26	4.6	0.1
C28	C30	C2	H11	120.7	122.7
C2	C30	C28	H27	245.5	236.7
C5	C4	N3	C2	111.3	90.0
N3	C2	C30	C28	355.2	359.9
N3	C2	C30	H11	234.5	237.2
C4	N3	C2	C26	176.3	180.0
C2	N3	C4	H1	349.8	330.0
C2	N3	C4	H2	232.8	210.0
C2	N3	C26	C28	0.5	0.0
C2	N3	C26	O27	179.3	180.0
C35	C34	C32	C38	53.0	53.6
C35	C34	C32	H12	180.4	180.3
C32	C34	C35	H13	118.1	116.7
C32	C34	C35	H14	241.9	243.3
C30	C28	C35	C34	322.2	326.1
C37	C35	C34	C28	250.3	252.8
C37	C35	C34	H15	125.7	126.0
C34	C35	C37	H16	274.5	152.5
C34	C35	C37	H17	152.7	274.8
C34	C35	C28	C26	69.8	75.8
C28	C35	C34	H15	235.3	233.2
C34	C35	C28	H27	200.9	202.7
H13	C34	C35	H14	123.8	126.6
C37	C38	C32	H12	200.7	199.6
C32	C38	C37	H18	119.1	118.9
C32	C38	C37	H19	240.9	241.2
C38	C37	C35	C28	290.4	289.5
C38	C37	C35	H15	159.5	159.9
C35	C37	C38	H16	240.9	118.8
C35	C37	C38	H17	119.1	241.2
H16	C37	C38	H17	238.1	122.4
C5	C4	N3	H1	121.5	120.0
C5	C4	N3	H2	238.5	240.0
C2	N3	C4	C26	184.1	180.0
C4	N3	C26	C28	184.4	180.0
C4	N3	C26	O27	3.2	360.0
H1	C4	N3	H2	117.1	119.9
C32	C30	C28	H11	119.9	124.1
C28	C30	C2	N3	355.2	359.9
C2	C30	C28	H11	238.7	237.4
C34	C35	C28	C30	322.2	326.1
N3	C26	C28	C30	356.7	360.0
C37	C35	C28	C30	66.8	70.2
C35	C28	C30	C26	119.4	113.3
C30	C28	C35	H15	197.5	199.5
C35	C28	C30	H27	238.5	236.7
O27	C26	C28	C30	177.9	180.0
C26	C28	C30	H27	119.1	123.3
C8	C9	C10	C25	177.2	179.8
C10	C9	C8	H3	10.4	150.2
C10	C9	C8	H4	253.2	30.2
C10	C9	C25	H26	181.2	180.2
C2	N3	C26	C4	176.1	180.0
C26	N3	C4	H1	165.7	150.0
C26	N3	C4	H2	48.7	30.1
C30	C28	C26	N3	356.7	360.0
C35	C28	C26	N3	246.2	249.5
O27	C26	N3	C28	178.8	180.0
N3	C26	C28	H27	115.2	122.9
C25	C9	C8	H3	187.7	330.0
C25	C9	C8	H4	70.4	210.0
C9	C25	C24	H10	177.0	180.2
C17	C11	C12	C24	179.6	180.7
C17	C16	C14	C21	60.0	57.3
C14	C16	C17	H6	240.1	240.4
C14	C16	C17	H7	119.8	119.6
C17	C16	C14	H22	179.0	177.5
H6	C16	C17	H7	239.7	239.2
O19	C17	C16	C14	299.8	298.5
O19	C17	C16	H6	59.7	58.1
O19	C17	C16	H7	180.0	178.8
C17	O19	C20	H23	67.6	177.7
C17	O19	C20	H24	187.3	57.7
N13	C12	C11	C24	184.9	180.7
C11	C12	C24	H10	184.5	179.7
C11	C12	N13	H5	115.0	170.4
C32	C38	C37	C35	359.1	0.1
C34	C35	C37	C28	103.2	104.2
C37	C35	C34	H13	188.4	189.8
C37	C35	C34	H14	64.6	63.2
C34	C35	C37	H15	234.1	233.8
C38	C37	C35	H16	119.1	241.2
C38	C37	C35	H17	240.9	118.9
C30	C28	C35	C37	66.8	70.2
C37	C35	C28	C26	174.4	179.9
C28	C35	C37	H15	130.9	129.6
C37	C35	C28	H27	305.6	306.8
H16	C37	C35	H17	121.8	237.7
C34	C35	C28	C37	255.3	255.9
C28	C35	C34	H13	298.0	297.0
C28	C35	C34	H14	174.2	170.5
C34	C35	C28	H15	124.7	126.6
C30	C28	C35	C26	252.4	250.3
C35	C28	C30	H11	245.4	236.0
C30	C28	C35	H27	121.2	123.4
N3	C26	C28	C35	246.2	249.5
C37	C35	C28	H15	229.3	230.7
C28	C35	C37	H16	171.3	48.4
C28	C35	C37	H17	49.5	170.6
O27	C26	C28	C35	67.4	69.5
C26	C28	C35	H27	228.8	233.1
C30	C28	C26	C35	110.5	110.5
C26	C28	C30	H11	126.0	122.7
C30	C28	C26	H27	241.5	237.0
N3	C26	C28	O27	178.8	180.0
C26	C28	C35	H15	305.1	309.2
C35	C28	C26	H27	131.0	126.5
C30	C28	C26	O27	177.9	180.0
N3	C26	O27	C28	181.4	180.0
C35	C28	C26	O27	67.4	69.5
O27	C26	C28	H27	296.4	303.0
C8	C9	C25	C24	183.9	180.2
C12	C24	C25	H10	180.0	179.9
C17	C16	C14	H6	119.9	119.6
C17	C16	C14	H7	240.1	240.3
C16	C14	N13	H5	273.8	220.6
C16	C14	C21	O23	67.3	65.8
C16	C14	C21	H9	186.5	185.6
H6	C16	C14	H7	120.3	120.7
C20	O19	C17	H8	179.3	186.8
O19	C20	C21	O23	287.5	295.1
O19	C20	C21	H9	167.6	175.5
H23	C20	O19	H24	240.3	120.0
C11	C12	C24	N13	184.7	180.7
C25	C24	C12	H10	180.0	180.1
C24	C12	N13	H5	299.8	351.1
C11	C12	N13	C24	175.2	179.3
N13	C12	C24	H10	359.8	359.0
C14	N13	C12	H5	238.6	180.0
C12	N13	C14	H5	121.4	180.0
C21	C14	C16	H6	300.1	297.7
C21	C14	C16	H7	179.8	177.0
C16	C14	C21	H22	118.9	120.2
C21	C14	N13	H5	152.9	100.7
C20	C21	C14	O23	239.0	239.8
C20	C21	C14	H9	119.9	120.0
O23	C21	C14	H9	240.8	240.3
C14	C21	O23	H25	180.0	179.7
C17	O19	C20	C21	307.4	297.7
C14	C21	C20	O23	120.1	120.2
C14	C21	C20	H9	240.0	239.9
O23	C21	C20	H9	119.9	119.6
C20	C21	O23	H25	302.8	300.5
C14	C21	O23	H9	118.3	119.8
C20	C21	O23	H9	241.0	240.5
C5	C4	H1	N3	230.6	240.0
C5	C4	H1	H2	115.3	120.0
H1	C4	N3	C26	165.7	150.0
N3	C4	H1	H2	244.7	240.1
C5	C4	H2	N3	129.4	120.0
C5	C4	H2	H1	244.7	240.0
H2	C4	N3	C26	48.7	30.1
N3	C4	H2	H1	115.3	120.0
N7	C8	H3	C9	231.4	240.0
N7	C8	H3	H4	115.7	120.0
H3	C8	N7	H20	68.3	120.0
H3	C8	C9	C25	187.7	330.0
C9	C8	H3	H4	244.3	240.0
N7	C8	H4	C9	128.6	120.1
N7	C8	H4	H3	244.3	240.0
H4	C8	N7	H20	185.6	240.0
H4	C8	C9	C25	70.4	210.0
C9	C8	H4	H3	115.7	119.9
H5	N13	C12	C24	299.8	351.1
C17	C16	H6	C14	240.9	241.4
C17	C16	H6	H7	120.5	120.8
H6	C16	C14	C21	300.1	297.7
C14	C16	H6	H7	239.5	239.4
H6	C16	C14	H22	59.1	57.9
C17	C16	H7	C14	119.0	118.6
C17	C16	H7	H6	239.5	239.3
H7	C16	C14	C21	179.8	177.0
C14	C16	H7	H6	120.5	120.6
H7	C16	C14	H22	298.8	297.2
H8	C17	C16	C14	178.9	176.9
H8	C17	C16	H6	298.8	296.5
H8	C17	C16	H7	59.1	57.3
H8	C17	O19	C20	179.3	186.8
C14	C21	H9	O23	242.1	240.3
C20	C21	H9	O23	119.7	119.6
H9	C21	O23	H25	61.7	60.0
C32	C30	H11	C28	244.1	241.1
H11	C30	C2	N3	234.5	237.2
C2	C30	H11	C28	117.5	117.0
H11	C30	C28	C35	245.4	236.0
H11	C30	C28	C26	126.0	122.7
H11	C30	C28	H27	6.9	359.3
C34	C32	H12	C38	240.5	241.6
H12	C32	C34	C35	180.4	180.3
H12	C32	C34	H13	298.5	297.0
H12	C32	C34	H14	62.3	63.6
H12	C32	C38	C37	200.7	199.6
H12	C32	C38	H18	319.8	318.4
H12	C32	C38	H19	81.5	80.9
H12	C32	C30	C28	155.8	160.0
H12	C32	C30	H11	275.5	283.8
H13	C34	C32	C38	171.1	170.3
C32	C34	H13	C35	250.7	253.3
H13	C34	C32	H12	298.5	297.0
C32	C34	H13	H14	125.3	126.7
H13	C34	C35	C37	188.4	189.8
H13	C34	C35	C28	298.0	297.0
C35	C34	H13	H14	234.7	233.3
H13	C34	C35	H15	62.7	63.8
H14	C34	C32	C38	294.9	296.9
C32	C34	H14	C35	109.3	106.7
H14	C34	C32	H12	62.3	63.6
C32	C34	H14	H13	234.7	233.3
H14	C34	C35	C37	64.6	63.2
H14	C34	C35	C28	174.2	170.5
C35	C34	H14	H13	125.3	126.7
H14	C34	C35	H15	298.9	297.3
C34	C35	H15	C37	118.0	117.9
C34	C35	H15	C28	244.6	241.5
H15	C35	C34	H13	62.7	63.8
H15	C35	C34	H14	298.9	297.3
C37	C35	H15	C28	126.6	123.6
H15	C35	C37	H16	40.5	278.7
H15	C35	C37	H17	278.6	41.0
H15	C35	C28	C26	305.1	309.2
H15	C35	C28	H27	76.3	76.1
C38	C37	H16	H17	122.7	237.5
H16	C37	C35	C28	171.3	48.4
H16	C37	C35	H15	40.5	278.7
C35	C37	H16	H17	237.4	122.3
C38	C37	H17	H16	237.3	122.5
H17	C37	C35	C28	49.5	170.6
H17	C37	C35	H15	278.6	41.0
C35	C37	H17	H16	122.6	237.7
C32	C38	H18	C37	245.1	244.8
H18	C38	C32	H12	319.8	318.4
C32	C38	H18	H19	122.6	122.5
H18	C38	C37	H16	359.1	122.4
H18	C38	C37	H17	120.9	0.0
C32	C38	H19	C37	114.9	115.2
H19	C38	C32	H12	81.5	80.9
C32	C38	H19	H18	237.4	237.5
H19	C38	C37	H16	237.4	0.1
H19	C38	C37	H17	359.2	237.7
H20	N7	C8	C9	307.0	0.1
C5	N7	H20	C8	180.0	180.1
H20	N7	C8	H3	68.3	120.0
H20	N7	C8	H4	185.6	240.0
H21	C10	C9	C25	179.1	180.1
C16	C14	H22	C21	240.5	239.8
H22	C14	C16	H6	59.1	57.9
H22	C14	C16	H7	298.8	297.2
H22	C14	N13	H5	33.0	340.0
H22	C14	C21	O23	308.4	305.6
H22	C14	C21	H9	67.6	65.4
O19	C20	H23	H24	119.6	240.0
H23	C20	C21	O23	167.4	55.1
H23	C20	C21	H9	47.5	295.5
O19	C20	H24	H23	240.5	120.0
H24	C20	C21	O23	47.7	175.1
H24	C20	C21	H9	287.8	55.5
H25	O23	C21	H9	61.7	60.0
H26	C25	C24	H10	357.0	360.0
C30	C28	H27	C35	243.4	241.5
C30	C28	H27	C26	110.7	117.4
H27	C28	C30	H11	6.9	359.3
C35	C28	H27	C26	227.4	235.9
H27	C28	C35	H15	76.3	76.1