PDB Chemical Component JTF
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for JTF
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C01 |
N01 |
1.461 |
1.469 |
N01 |
C02 |
1.460 |
1.469 |
N01 |
C03 |
1.465 |
1.469 |
C03 |
C04 |
1.516 |
1.530 |
C04 |
N02 |
1.454 |
1.465 |
N02 |
C05 |
1.374 |
1.398 |
C05 |
C06 |
1.397 |
1.385 |
C05 |
C1 |
1.409 |
1.398 |
C06 |
C07 |
1.385 |
1.387 |
C07 |
C08 |
1.382 |
1.367 |
C08 |
C09 |
1.397 |
1.400 |
C09 |
C10 |
1.436 |
1.464 |
C09 |
C1 |
1.406 |
1.406 |
C10 |
C11 |
1.352 |
1.356 |
C11 |
C12 |
1.505 |
1.507 |
C11 |
C13 |
1.463 |
1.412 |
C13 |
O1 |
1.231 |
1.219 |
C13 |
N1 |
1.357 |
1.345 |
N1 |
C1 |
1.385 |
1.379 |
C01 |
H011 |
1.100 |
1.090 |
C01 |
H012 |
1.100 |
1.091 |
C01 |
H013 |
1.100 |
1.090 |
C02 |
H021 |
1.100 |
1.090 |
C02 |
H022 |
1.100 |
1.090 |
C02 |
H023 |
1.100 |
1.090 |
C03 |
H031 |
1.100 |
1.090 |
C03 |
H032 |
1.100 |
1.090 |
C04 |
H041 |
1.100 |
1.090 |
C04 |
H042 |
1.100 |
1.090 |
N02 |
H02 |
1.000 |
0.971 |
C06 |
H06 |
1.080 |
1.080 |
C07 |
H07 |
1.080 |
1.080 |
C08 |
H08 |
1.080 |
1.080 |
C10 |
H10 |
1.080 |
1.080 |
C12 |
H121 |
1.100 |
1.090 |
C12 |
H122 |
1.100 |
1.090 |
C12 |
H123 |
1.100 |
1.089 |
N1 |
H1 |
1.000 |
0.970 |
Bond Angles for JTF
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C01 |
N01 |
C02 |
109.9 |
111.0 |
C01 |
N01 |
C03 |
110.6 |
111.0 |
N01 |
C01 |
H011 |
109.5 |
109.5 |
N01 |
C01 |
H012 |
109.5 |
109.5 |
N01 |
C01 |
H013 |
109.5 |
109.5 |
C02 |
N01 |
C03 |
111.4 |
111.0 |
N01 |
C02 |
H021 |
109.5 |
109.4 |
N01 |
C02 |
H022 |
109.5 |
109.5 |
N01 |
C02 |
H023 |
109.5 |
109.5 |
N01 |
C03 |
C04 |
112.6 |
109.5 |
N01 |
C03 |
H031 |
108.7 |
109.4 |
N01 |
C03 |
H032 |
108.7 |
109.4 |
C03 |
C04 |
N02 |
110.3 |
109.5 |
C04 |
C03 |
H031 |
108.7 |
109.5 |
C04 |
C03 |
H032 |
108.7 |
109.5 |
C03 |
C04 |
H041 |
109.3 |
109.5 |
C03 |
C04 |
H042 |
109.3 |
109.5 |
C04 |
N02 |
C05 |
125.0 |
120.0 |
N02 |
C04 |
H041 |
109.3 |
109.4 |
N02 |
C04 |
H042 |
109.3 |
109.4 |
C04 |
N02 |
H02 |
105.5 |
120.0 |
N02 |
C05 |
C06 |
123.2 |
120.2 |
N02 |
C05 |
C1 |
119.0 |
120.2 |
C05 |
N02 |
H02 |
105.5 |
120.0 |
C06 |
C05 |
C1 |
117.8 |
119.6 |
C05 |
C06 |
C07 |
121.2 |
120.6 |
C05 |
C06 |
H06 |
119.4 |
119.7 |
C05 |
C1 |
C09 |
121.4 |
119.4 |
C05 |
C1 |
N1 |
120.0 |
120.9 |
C06 |
C07 |
C08 |
120.4 |
120.7 |
C07 |
C06 |
H06 |
119.4 |
119.7 |
C06 |
C07 |
H07 |
119.8 |
119.7 |
C07 |
C08 |
C09 |
120.5 |
119.8 |
C08 |
C07 |
H07 |
119.8 |
119.6 |
C07 |
C08 |
H08 |
119.8 |
120.1 |
C08 |
C09 |
C10 |
124.1 |
121.1 |
C08 |
C09 |
C1 |
118.6 |
119.9 |
C09 |
C08 |
H08 |
119.7 |
120.1 |
C10 |
C09 |
C1 |
117.2 |
119.0 |
C09 |
C10 |
C11 |
122.8 |
118.6 |
C09 |
C10 |
H10 |
118.6 |
120.7 |
C09 |
C1 |
N1 |
118.6 |
119.7 |
C10 |
C11 |
C12 |
121.6 |
119.9 |
C10 |
C11 |
C13 |
119.6 |
120.2 |
C11 |
C10 |
H10 |
118.6 |
120.7 |
C12 |
C11 |
C13 |
118.9 |
119.9 |
C11 |
C12 |
H121 |
109.5 |
109.5 |
C11 |
C12 |
H122 |
109.5 |
109.4 |
C11 |
C12 |
H123 |
109.5 |
109.5 |
C11 |
C13 |
O1 |
124.6 |
119.2 |
C11 |
C13 |
N1 |
116.1 |
121.6 |
O1 |
C13 |
N1 |
119.3 |
119.2 |
C13 |
N1 |
C1 |
125.6 |
120.9 |
C13 |
N1 |
H1 |
117.2 |
119.5 |
C1 |
N1 |
H1 |
117.2 |
119.6 |
H011 |
C01 |
H012 |
109.4 |
109.4 |
H011 |
C01 |
H013 |
109.5 |
109.5 |
H012 |
C01 |
H013 |
109.5 |
109.5 |
H021 |
C02 |
H022 |
109.5 |
109.5 |
H021 |
C02 |
H023 |
109.5 |
109.5 |
H022 |
C02 |
H023 |
109.5 |
109.5 |
H031 |
C03 |
H032 |
109.5 |
109.5 |
H041 |
C04 |
H042 |
109.5 |
109.5 |
H121 |
C12 |
H122 |
109.4 |
109.5 |
H121 |
C12 |
H123 |
109.5 |
109.5 |
H122 |
C12 |
H123 |
109.5 |
109.5 |
Torsion Angles for JTF
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C02 |
N01 |
C01 |
C03 |
123.4 |
236.0 |
C01 |
N01 |
C02 |
H021 |
180.0 |
64.0 |
C01 |
N01 |
C02 |
H022 |
300.0 |
184.0 |
C01 |
N01 |
C02 |
H023 |
60.0 |
304.0 |
C01 |
N01 |
C03 |
C04 |
195.6 |
66.0 |
C01 |
N01 |
C03 |
H031 |
316.1 |
186.0 |
C01 |
N01 |
C03 |
H032 |
75.2 |
306.0 |
H011 |
C01 |
N01 |
H012 |
240.0 |
240.1 |
H011 |
C01 |
N01 |
H013 |
120.0 |
120.1 |
H012 |
C01 |
N01 |
H013 |
240.0 |
240.0 |
C01 |
N01 |
C02 |
C03 |
237.1 |
124.0 |
C02 |
N01 |
C01 |
H011 |
180.0 |
60.0 |
C02 |
N01 |
C01 |
H012 |
300.0 |
180.0 |
C02 |
N01 |
C01 |
H013 |
60.0 |
300.0 |
C02 |
N01 |
C03 |
C04 |
73.2 |
190.0 |
C02 |
N01 |
C03 |
H031 |
193.6 |
310.0 |
C02 |
N01 |
C03 |
H032 |
312.7 |
70.0 |
H021 |
C02 |
N01 |
H022 |
240.0 |
240.0 |
H021 |
C02 |
N01 |
H023 |
120.0 |
120.0 |
H022 |
C02 |
N01 |
H023 |
240.0 |
240.0 |
C01 |
N01 |
C03 |
C02 |
122.5 |
236.0 |
C03 |
N01 |
C01 |
H011 |
56.6 |
184.0 |
C03 |
N01 |
C01 |
H012 |
176.6 |
304.0 |
C03 |
N01 |
C01 |
H013 |
296.6 |
63.9 |
C03 |
N01 |
C02 |
H021 |
302.9 |
300.0 |
C03 |
N01 |
C02 |
H022 |
62.9 |
60.0 |
C03 |
N01 |
C02 |
H023 |
182.9 |
180.0 |
N01 |
C03 |
C04 |
N02 |
264.7 |
180.0 |
C04 |
C03 |
N01 |
H031 |
239.5 |
240.0 |
C04 |
C03 |
N01 |
H032 |
120.5 |
120.0 |
N01 |
C03 |
C04 |
H041 |
24.9 |
300.0 |
N01 |
C03 |
C04 |
H042 |
144.6 |
60.0 |
H031 |
C03 |
N01 |
H032 |
240.9 |
240.0 |
N01 |
C03 |
C04 |
H031 |
120.4 |
120.0 |
N01 |
C03 |
C04 |
H032 |
239.5 |
240.0 |
C03 |
C04 |
N02 |
C05 |
238.2 |
180.0 |
N02 |
C04 |
C03 |
H041 |
239.9 |
240.0 |
N02 |
C04 |
C03 |
H042 |
120.1 |
120.0 |
C03 |
C04 |
N02 |
H02 |
0.4 |
0.0 |
H031 |
C03 |
C04 |
H032 |
119.1 |
120.0 |
H041 |
C04 |
C03 |
H042 |
240.3 |
239.9 |
N02 |
C04 |
C03 |
H031 |
144.3 |
60.0 |
N02 |
C04 |
C03 |
H032 |
25.2 |
300.0 |
C03 |
C04 |
N02 |
H041 |
120.1 |
120.0 |
C03 |
C04 |
N02 |
H042 |
239.9 |
240.0 |
C04 |
N02 |
C05 |
C06 |
42.6 |
0.0 |
C04 |
N02 |
C05 |
C1 |
221.4 |
179.7 |
C05 |
N02 |
C04 |
H02 |
237.9 |
179.9 |
H041 |
C04 |
N02 |
H042 |
119.8 |
120.0 |
C05 |
N02 |
C04 |
H041 |
118.1 |
60.0 |
C05 |
N02 |
C04 |
H042 |
358.3 |
300.0 |
C04 |
N02 |
C05 |
H02 |
122.1 |
180.1 |
C06 |
C05 |
N02 |
C1 |
181.2 |
180.4 |
N02 |
C05 |
C06 |
C07 |
179.6 |
180.0 |
N02 |
C05 |
C06 |
H06 |
359.6 |
359.9 |
N02 |
C05 |
C1 |
C09 |
180.5 |
179.7 |
N02 |
C05 |
C1 |
N1 |
0.9 |
0.7 |
N02 |
C05 |
C06 |
C1 |
178.8 |
179.7 |
C06 |
C05 |
N02 |
H02 |
280.4 |
180.0 |
C06 |
C05 |
C1 |
C09 |
359.3 |
359.4 |
C06 |
C05 |
C1 |
N1 |
179.8 |
180.3 |
C05 |
C06 |
C07 |
C08 |
359.4 |
360.0 |
C07 |
C06 |
C05 |
H06 |
180.0 |
180.0 |
C05 |
C06 |
C07 |
H07 |
179.4 |
180.0 |
N02 |
C05 |
C1 |
C06 |
181.1 |
180.4 |
C1 |
C05 |
N02 |
H02 |
99.2 |
359.6 |
C1 |
C05 |
C06 |
C07 |
0.8 |
0.3 |
C1 |
C05 |
C06 |
H06 |
180.8 |
180.3 |
C08 |
C09 |
C1 |
C05 |
0.3 |
0.6 |
C10 |
C09 |
C1 |
C05 |
180.4 |
180.4 |
C09 |
C1 |
C05 |
N1 |
179.5 |
179.1 |
C13 |
N1 |
C1 |
C05 |
180.1 |
179.6 |
C05 |
C1 |
N1 |
H1 |
0.1 |
359.3 |
C07 |
C06 |
C05 |
C1 |
0.8 |
0.3 |
C05 |
C06 |
C07 |
H06 |
180.0 |
180.0 |
C06 |
C07 |
C08 |
C09 |
0.1 |
0.0 |
C08 |
C07 |
C06 |
H07 |
180.0 |
180.0 |
C06 |
C07 |
C08 |
H08 |
180.1 |
179.9 |
C08 |
C07 |
C06 |
H06 |
179.4 |
180.0 |
C06 |
C07 |
C08 |
H07 |
180.0 |
180.0 |
C07 |
C08 |
C09 |
C10 |
179.8 |
179.9 |
C07 |
C08 |
C09 |
C1 |
0.0 |
359.7 |
C09 |
C08 |
C07 |
H08 |
180.0 |
180.1 |
C05 |
C1 |
C09 |
C08 |
0.3 |
0.6 |
C09 |
C08 |
C07 |
H07 |
180.1 |
180.0 |
C07 |
C08 |
C09 |
H08 |
180.0 |
179.9 |
C10 |
C09 |
C08 |
C1 |
179.8 |
180.3 |
C08 |
C09 |
C10 |
C11 |
180.0 |
180.0 |
C08 |
C09 |
C10 |
H10 |
360.0 |
0.0 |
C08 |
C09 |
C1 |
N1 |
179.8 |
179.7 |
C05 |
C1 |
C09 |
C10 |
180.4 |
180.4 |
C08 |
C09 |
C10 |
C1 |
180.2 |
179.7 |
C10 |
C09 |
C08 |
H08 |
359.8 |
0.0 |
C10 |
C09 |
C1 |
N1 |
360.0 |
359.4 |
C09 |
C10 |
C11 |
C12 |
180.1 |
180.0 |
C09 |
C10 |
C11 |
C13 |
360.0 |
0.0 |
C11 |
C10 |
C09 |
H10 |
180.0 |
180.0 |
C05 |
C1 |
C09 |
N1 |
180.5 |
180.9 |
C08 |
C09 |
C1 |
C10 |
179.8 |
180.3 |
C1 |
C09 |
C08 |
H08 |
180.0 |
179.8 |
C1 |
C09 |
C10 |
C11 |
359.8 |
0.3 |
C1 |
C09 |
C10 |
H10 |
179.8 |
180.3 |
C13 |
N1 |
C1 |
C09 |
0.5 |
0.5 |
C09 |
C1 |
N1 |
H1 |
180.5 |
180.3 |
C11 |
C10 |
C09 |
C1 |
359.8 |
0.3 |
C09 |
C10 |
C11 |
H10 |
180.0 |
180.0 |
C12 |
C11 |
C10 |
C13 |
180.1 |
180.0 |
C10 |
C11 |
C12 |
H121 |
180.0 |
90.0 |
C10 |
C11 |
C12 |
H122 |
300.0 |
210.0 |
C10 |
C11 |
C12 |
H123 |
60.0 |
330.0 |
C10 |
C11 |
C13 |
O1 |
180.0 |
180.0 |
C10 |
C11 |
C13 |
N1 |
0.5 |
359.9 |
C10 |
C11 |
C12 |
C13 |
179.9 |
180.0 |
C12 |
C11 |
C10 |
H10 |
0.1 |
0.0 |
C12 |
C11 |
C13 |
O1 |
359.9 |
0.1 |
C12 |
C11 |
C13 |
N1 |
180.3 |
179.9 |
H121 |
C12 |
C11 |
H122 |
240.0 |
240.0 |
H121 |
C12 |
C11 |
H123 |
120.0 |
120.0 |
H122 |
C12 |
C11 |
H123 |
240.0 |
240.0 |
C10 |
C11 |
C13 |
C12 |
180.1 |
180.0 |
C13 |
C11 |
C10 |
H10 |
180.0 |
180.1 |
C13 |
C11 |
C12 |
H121 |
0.1 |
270.0 |
C13 |
C11 |
C12 |
H122 |
120.1 |
30.0 |
C13 |
C11 |
C12 |
H123 |
240.1 |
150.0 |
O1 |
C13 |
C11 |
N1 |
179.5 |
180.2 |
C11 |
C13 |
N1 |
C1 |
359.3 |
359.8 |
C11 |
C13 |
N1 |
H1 |
179.3 |
180.1 |
C11 |
C13 |
O1 |
N1 |
180.5 |
179.9 |
O1 |
C13 |
N1 |
C1 |
179.7 |
179.7 |
O1 |
C13 |
N1 |
H1 |
359.7 |
359.9 |
C05 |
C1 |
N1 |
C13 |
180.1 |
179.6 |
C09 |
C1 |
N1 |
C13 |
0.5 |
0.5 |
C11 |
C13 |
N1 |
O1 |
179.6 |
180.2 |
C1 |
N1 |
C13 |
H1 |
180.0 |
179.8 |
C05 |
C1 |
N1 |
C09 |
179.6 |
179.1 |
C13 |
N1 |
C1 |
H1 |
180.0 |
180.2 |
H011 |
C01 |
N01 |
C02 |
180.0 |
60.0 |
H011 |
C01 |
N01 |
C03 |
56.6 |
184.0 |
N01 |
C01 |
H011 |
H012 |
120.0 |
120.0 |
N01 |
C01 |
H011 |
H013 |
240.0 |
240.0 |
H012 |
C01 |
H011 |
H013 |
120.0 |
120.0 |
H012 |
C01 |
N01 |
C02 |
300.0 |
180.0 |
H012 |
C01 |
N01 |
C03 |
176.6 |
304.0 |
N01 |
C01 |
H012 |
H011 |
240.0 |
240.0 |
N01 |
C01 |
H012 |
H013 |
120.0 |
120.0 |
H011 |
C01 |
H012 |
H013 |
240.0 |
240.0 |
H013 |
C01 |
N01 |
C02 |
60.0 |
300.0 |
H013 |
C01 |
N01 |
C03 |
296.6 |
63.9 |
N01 |
C01 |
H013 |
H011 |
120.0 |
120.1 |
N01 |
C01 |
H013 |
H012 |
240.0 |
240.0 |
H011 |
C01 |
H013 |
H012 |
120.0 |
120.0 |
H021 |
C02 |
N01 |
C03 |
302.9 |
300.0 |
N01 |
C02 |
H021 |
H022 |
120.0 |
120.0 |
N01 |
C02 |
H021 |
H023 |
240.0 |
240.0 |
H022 |
C02 |
H021 |
H023 |
120.0 |
120.0 |
H022 |
C02 |
N01 |
C03 |
62.9 |
60.0 |
N01 |
C02 |
H022 |
H021 |
240.0 |
240.1 |
N01 |
C02 |
H022 |
H023 |
120.0 |
120.0 |
H021 |
C02 |
H022 |
H023 |
240.0 |
239.9 |
H023 |
C02 |
N01 |
C03 |
182.9 |
180.0 |
N01 |
C02 |
H023 |
H021 |
120.0 |
120.0 |
N01 |
C02 |
H023 |
H022 |
240.0 |
240.0 |
H021 |
C02 |
H023 |
H022 |
120.0 |
120.0 |
N01 |
C03 |
H031 |
C04 |
237.2 |
240.0 |
N01 |
C03 |
H031 |
H032 |
118.6 |
120.0 |
H031 |
C03 |
C04 |
N02 |
144.3 |
60.0 |
C04 |
C03 |
H031 |
H032 |
241.4 |
240.0 |
H031 |
C03 |
C04 |
H041 |
264.4 |
180.0 |
H031 |
C03 |
C04 |
H042 |
24.2 |
300.1 |
N01 |
C03 |
H032 |
C04 |
122.8 |
120.0 |
N01 |
C03 |
H032 |
H031 |
241.5 |
240.0 |
H032 |
C03 |
C04 |
N02 |
25.2 |
300.0 |
C04 |
C03 |
H032 |
H031 |
118.6 |
120.0 |
H032 |
C03 |
C04 |
H041 |
145.3 |
60.0 |
H032 |
C03 |
C04 |
H042 |
265.1 |
180.0 |
C03 |
C04 |
H041 |
N02 |
239.2 |
240.0 |
H041 |
C04 |
C03 |
H031 |
264.4 |
180.0 |
H041 |
C04 |
C03 |
H032 |
145.3 |
60.0 |
C03 |
C04 |
H041 |
H042 |
119.6 |
120.0 |
H041 |
C04 |
N02 |
C05 |
118.1 |
60.0 |
N02 |
C04 |
H041 |
H042 |
240.4 |
240.0 |
H041 |
C04 |
N02 |
H02 |
240.2 |
240.0 |
C03 |
C04 |
H042 |
N02 |
120.7 |
120.0 |
H042 |
C04 |
C03 |
H031 |
24.2 |
300.1 |
H042 |
C04 |
C03 |
H032 |
265.1 |
180.0 |
C03 |
C04 |
H042 |
H041 |
240.4 |
240.0 |
H042 |
C04 |
N02 |
C05 |
358.3 |
300.0 |
N02 |
C04 |
H042 |
H041 |
119.6 |
120.0 |
H042 |
C04 |
N02 |
H02 |
120.5 |
120.0 |
C04 |
N02 |
H02 |
C05 |
226.0 |
179.9 |
H02 |
N02 |
C04 |
H041 |
240.2 |
240.0 |
H02 |
N02 |
C04 |
H042 |
120.5 |
120.0 |
H02 |
N02 |
C05 |
C06 |
280.4 |
180.0 |
H02 |
N02 |
C05 |
C1 |
99.2 |
359.6 |
H06 |
C06 |
C05 |
C1 |
180.8 |
180.3 |
C05 |
C06 |
H06 |
C07 |
180.0 |
180.0 |
H06 |
C06 |
C07 |
C08 |
179.4 |
180.0 |
H06 |
C06 |
C07 |
H07 |
359.4 |
0.0 |
C06 |
C07 |
H07 |
C08 |
180.0 |
180.0 |
H07 |
C07 |
C06 |
H06 |
359.4 |
0.0 |
H07 |
C07 |
C08 |
C09 |
180.1 |
180.0 |
H07 |
C07 |
C08 |
H08 |
0.1 |
359.9 |
C07 |
C08 |
H08 |
C09 |
180.0 |
180.1 |
H08 |
C08 |
C07 |
H07 |
0.1 |
359.9 |
H08 |
C08 |
C09 |
C10 |
359.8 |
0.0 |
H08 |
C08 |
C09 |
C1 |
180.0 |
179.8 |
H10 |
C10 |
C09 |
C1 |
179.8 |
180.3 |
C09 |
C10 |
H10 |
C11 |
180.0 |
180.0 |
H10 |
C10 |
C11 |
C12 |
0.1 |
0.0 |
H10 |
C10 |
C11 |
C13 |
180.0 |
180.1 |
H121 |
C12 |
C11 |
C13 |
0.1 |
270.0 |
C11 |
C12 |
H121 |
H122 |
120.0 |
120.0 |
C11 |
C12 |
H121 |
H123 |
240.0 |
240.0 |
H122 |
C12 |
H121 |
H123 |
120.0 |
120.0 |
H122 |
C12 |
C11 |
C13 |
120.1 |
30.0 |
C11 |
C12 |
H122 |
H121 |
240.0 |
240.0 |
C11 |
C12 |
H122 |
H123 |
120.0 |
120.0 |
H121 |
C12 |
H122 |
H123 |
240.0 |
240.0 |
H123 |
C12 |
C11 |
C13 |
240.1 |
150.0 |
C11 |
C12 |
H123 |
H121 |
120.0 |
120.0 |
C11 |
C12 |
H123 |
H122 |
240.0 |
240.0 |
H121 |
C12 |
H123 |
H122 |
119.9 |
120.0 |
C13 |
N1 |
H1 |
C1 |
180.0 |
179.8 |