PDB Chemical Component JSP

Ideal Model

Chemical Description

Name (1R)-1-(4-amino-1-methyl-2-oxo-1,2-dihydropyrimidin-5-yl)-1,4-anhydro-2-deoxy-5-O-phosphono-D-erythro-pentitol
Formula C10 H16 N3 O7 P
Formal charge 0
Molecular weight 321.224 g/mol
Component type DNA linking

Chemical features

Atom count 37
Chiral atom count 3
Chiral atoms C1' C3' C4'
Observed leaving atoms OP3 H15
Bond count 38
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) (1R)-1-(4-amino-1-methyl-2-oxo-1,2-dihydropyrimidin-5-yl)-1,4-anhydro-2-deoxy-5-O-phosphono-D-erythro-pentitol
Systematic name (OpenEye OEToolkits) [(2~{R},3~{S},5~{R})-5-(4-azanyl-1-methyl-2-oxidanylidene-pyrimidin-5-yl)-3-oxidanyl-oxolan-2-yl]methyl dihydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) CN1C=C([C@H]2C[C@H](O)[C@@H](CO[P](O)(O)=O)O2)C(=NC1=O)N
SMILES (CACTVS) CN1C=C([CH]2C[CH](O)[CH](CO[P](O)(O)=O)O2)C(=NC1=O)N
Stereo SMILES (OpenEye) CN1C=C(C(=NC1=O)N)[C@H]2C[C@@H]([C@H](O2)COP(=O)(O)O)O
InChI descriptor InChI=1S/C10H16N3O7P/c1-13-3-5(9(11)12-10(13)15)7-2-6(14)8(20-7)4-19-21(16,17)18/h3,6-8,14H,2,4H2,1H3,(H2,11,12,15)(H2,16,17,18)/t6-,7+,8+/m0/s1
InChIKey descriptor NSXSEZCKIMJZGT-XLPZGREQSA-N

Status Information

Last modified 2019-02-22
Created 2018-09-20
Release status REL
Model PDB code 6MIG
Processing site RCSB