PDB Chemical Component JS7
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for JS7
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N1 |
C2 |
1.329 |
1.317 |
| N1 |
C6 |
1.343 |
1.331 |
| C2 |
N3 |
1.318 |
1.318 |
| N3 |
C4 |
1.332 |
1.331 |
| C4 |
C5 |
1.431 |
1.394 |
| C4 |
N7 |
1.411 |
1.386 |
| C5 |
C6 |
1.433 |
1.388 |
| C5 |
N18 |
1.535 |
1.480 |
| C6 |
O21 |
1.499 |
1.355 |
| N7 |
C23 |
1.405 |
1.464 |
| C8 |
C9 |
1.390 |
1.382 |
| C8 |
C13 |
1.419 |
1.382 |
| C8 |
C24 |
1.497 |
1.507 |
| C9 |
C10 |
1.417 |
1.382 |
| C10 |
C11 |
1.385 |
1.382 |
| C11 |
C12 |
1.418 |
1.382 |
| C11 |
S14 |
1.837 |
1.763 |
| C12 |
C13 |
1.436 |
1.382 |
| S14 |
O15 |
1.490 |
1.421 |
| S14 |
O16 |
1.577 |
1.421 |
| S14 |
N17 |
1.657 |
1.656 |
| N18 |
O19 |
1.186 |
1.218 |
| N18 |
O20 |
1.345 |
1.218 |
| O21 |
C22 |
1.389 |
1.429 |
| C23 |
C24 |
1.521 |
1.530 |
| C2 |
H2 |
1.080 |
1.080 |
| N7 |
HN7 |
1.000 |
0.969 |
| C9 |
H9 |
1.080 |
1.080 |
| C10 |
H10 |
1.080 |
1.080 |
| C12 |
H12 |
1.080 |
1.080 |
| C13 |
H13 |
1.080 |
1.081 |
| N17 |
HN17 |
1.001 |
0.970 |
| N17 |
HN1A |
1.000 |
0.970 |
| C22 |
H22 |
1.100 |
1.091 |
| C22 |
H22A |
1.100 |
1.090 |
| C22 |
H22B |
1.100 |
1.090 |
| C23 |
H23 |
1.100 |
1.089 |
| C23 |
H23A |
1.100 |
1.091 |
| C24 |
H24 |
1.100 |
1.090 |
| C24 |
H24A |
1.099 |
1.090 |
Bond Angles for JS7
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
N1 |
C6 |
123.7 |
120.9 |
| N1 |
C2 |
N3 |
121.4 |
121.9 |
| N1 |
C2 |
H2 |
119.3 |
119.1 |
| N1 |
C6 |
C5 |
116.9 |
119.1 |
| N1 |
C6 |
O21 |
113.4 |
120.4 |
| C2 |
N3 |
C4 |
120.5 |
120.8 |
| N3 |
C2 |
H2 |
119.3 |
119.0 |
| N3 |
C4 |
C5 |
120.7 |
119.0 |
| N3 |
C4 |
N7 |
117.1 |
120.5 |
| C5 |
C4 |
N7 |
122.2 |
120.5 |
| C4 |
C5 |
C6 |
116.8 |
118.3 |
| C4 |
C5 |
N18 |
117.6 |
120.9 |
| C4 |
N7 |
C23 |
118.5 |
120.0 |
| C4 |
N7 |
HN7 |
106.6 |
120.0 |
| C6 |
C5 |
N18 |
125.6 |
120.9 |
| C5 |
C6 |
O21 |
129.7 |
120.5 |
| C5 |
N18 |
O19 |
121.7 |
120.0 |
| C5 |
N18 |
O20 |
119.9 |
120.0 |
| C6 |
O21 |
C22 |
122.9 |
117.0 |
| N7 |
C23 |
C24 |
104.1 |
109.5 |
| C23 |
N7 |
HN7 |
106.6 |
120.0 |
| N7 |
C23 |
H23 |
111.3 |
109.5 |
| N7 |
C23 |
H23A |
111.3 |
109.5 |
| C9 |
C8 |
C13 |
119.4 |
120.0 |
| C9 |
C8 |
C24 |
117.0 |
120.0 |
| C8 |
C9 |
C10 |
119.9 |
120.0 |
| C8 |
C9 |
H9 |
120.0 |
120.0 |
| C13 |
C8 |
C24 |
123.6 |
120.0 |
| C8 |
C13 |
C12 |
118.8 |
120.0 |
| C8 |
C13 |
H13 |
120.6 |
120.0 |
| C8 |
C24 |
C23 |
104.2 |
109.5 |
| C8 |
C24 |
H24 |
111.3 |
109.4 |
| C8 |
C24 |
H24A |
111.3 |
109.5 |
| C9 |
C10 |
C11 |
123.5 |
120.0 |
| C10 |
C9 |
H9 |
120.0 |
120.0 |
| C9 |
C10 |
H10 |
118.3 |
120.0 |
| C10 |
C11 |
C12 |
116.2 |
120.0 |
| C10 |
C11 |
S14 |
121.2 |
120.0 |
| C11 |
C10 |
H10 |
118.3 |
120.0 |
| C12 |
C11 |
S14 |
122.6 |
120.0 |
| C11 |
C12 |
C13 |
122.1 |
120.0 |
| C11 |
C12 |
H12 |
118.9 |
120.0 |
| C11 |
S14 |
O15 |
106.5 |
106.4 |
| C11 |
S14 |
O16 |
103.6 |
106.4 |
| C11 |
S14 |
N17 |
103.4 |
107.2 |
| C13 |
C12 |
H12 |
118.9 |
120.0 |
| C12 |
C13 |
H13 |
120.6 |
120.0 |
| O15 |
S14 |
O16 |
117.4 |
123.2 |
| O15 |
S14 |
N17 |
112.1 |
106.4 |
| O16 |
S14 |
N17 |
112.2 |
106.4 |
| S14 |
N17 |
HN17 |
109.5 |
120.0 |
| S14 |
N17 |
HN1A |
109.5 |
120.0 |
| O19 |
N18 |
O20 |
118.4 |
120.0 |
| O21 |
C22 |
H22 |
109.5 |
109.5 |
| O21 |
C22 |
H22A |
109.5 |
109.4 |
| O21 |
C22 |
H22B |
109.5 |
109.5 |
| C24 |
C23 |
H23 |
111.3 |
109.5 |
| C24 |
C23 |
H23A |
111.3 |
109.5 |
| C23 |
C24 |
H24 |
111.3 |
109.4 |
| C23 |
C24 |
H24A |
111.2 |
109.5 |
| HN17 |
N17 |
HN1A |
109.4 |
120.0 |
| H22 |
C22 |
H22A |
109.5 |
109.4 |
| H22 |
C22 |
H22B |
109.5 |
109.4 |
| H22A |
C22 |
H22B |
109.4 |
109.5 |
| H23 |
C23 |
H23A |
107.5 |
109.4 |
| H24 |
C24 |
H24A |
107.6 |
109.5 |
Torsion Angles for JS7
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
N1 |
C6 |
C5 |
359.4 |
359.9 |
| C2 |
N1 |
C6 |
O21 |
179.1 |
180.0 |
| N1 |
C2 |
N3 |
C4 |
359.5 |
359.9 |
| N3 |
C2 |
N1 |
H2 |
180.0 |
180.0 |
| C6 |
N1 |
C2 |
N3 |
0.8 |
0.1 |
| C6 |
N1 |
C2 |
H2 |
180.7 |
180.1 |
| C4 |
C5 |
C6 |
N1 |
0.2 |
0.0 |
| N1 |
C6 |
C5 |
N18 |
179.8 |
180.0 |
| C5 |
C6 |
N1 |
O21 |
180.4 |
180.0 |
| N1 |
C6 |
O21 |
C22 |
62.0 |
360.0 |
| N3 |
C2 |
N1 |
C6 |
0.8 |
0.1 |
| N1 |
C2 |
N3 |
H2 |
180.0 |
180.0 |
| C2 |
N3 |
C4 |
C5 |
0.1 |
0.0 |
| C2 |
N3 |
C4 |
N7 |
178.9 |
180.0 |
| C4 |
N3 |
C2 |
H2 |
179.5 |
179.9 |
| C5 |
C4 |
N3 |
N7 |
181.3 |
180.1 |
| N3 |
C4 |
C5 |
C6 |
0.0 |
360.0 |
| N3 |
C4 |
C5 |
N18 |
180.4 |
180.0 |
| N3 |
C4 |
N7 |
C23 |
21.0 |
0.0 |
| N3 |
C4 |
N7 |
HN7 |
141.0 |
180.0 |
| N1 |
C6 |
C5 |
C4 |
0.2 |
0.0 |
| N3 |
C4 |
C5 |
N7 |
178.7 |
179.9 |
| C5 |
C4 |
N7 |
C23 |
199.7 |
180.0 |
| C5 |
C4 |
N7 |
HN7 |
319.7 |
359.9 |
| C6 |
C5 |
C4 |
N18 |
179.6 |
180.0 |
| C4 |
C5 |
C6 |
O21 |
180.6 |
180.0 |
| C4 |
C5 |
N18 |
O19 |
122.4 |
90.0 |
| C4 |
C5 |
N18 |
O20 |
302.0 |
270.0 |
| N3 |
C4 |
N7 |
C5 |
181.3 |
180.1 |
| N7 |
C4 |
C5 |
C6 |
181.4 |
180.1 |
| N7 |
C4 |
C5 |
N18 |
1.7 |
0.1 |
| C4 |
N7 |
C23 |
C24 |
100.9 |
180.0 |
| C23 |
N7 |
C4 |
HN7 |
240.0 |
180.0 |
| C4 |
N7 |
C23 |
H23 |
220.9 |
300.0 |
| C4 |
N7 |
C23 |
H23A |
340.9 |
60.0 |
| N1 |
C6 |
C5 |
O21 |
179.6 |
180.0 |
| C6 |
C5 |
C4 |
N7 |
181.4 |
180.1 |
| C4 |
C5 |
C6 |
N18 |
180.4 |
180.0 |
| C6 |
C5 |
N18 |
O19 |
302.8 |
270.0 |
| C6 |
C5 |
N18 |
O20 |
122.4 |
90.0 |
| C5 |
C6 |
O21 |
C22 |
241.6 |
180.0 |
| N18 |
C5 |
C4 |
N7 |
1.7 |
0.1 |
| C4 |
C5 |
N18 |
C6 |
179.6 |
180.0 |
| N18 |
C5 |
C6 |
O21 |
0.2 |
360.0 |
| O19 |
N18 |
C5 |
O20 |
180.4 |
179.9 |
| N1 |
C6 |
O21 |
C5 |
180.4 |
180.0 |
| O21 |
C6 |
C5 |
N18 |
0.2 |
360.0 |
| C6 |
O21 |
C22 |
H22 |
180.0 |
180.0 |
| C6 |
O21 |
C22 |
H22A |
300.0 |
300.0 |
| C6 |
O21 |
C22 |
H22B |
60.0 |
60.1 |
| C4 |
N7 |
C23 |
HN7 |
120.0 |
180.0 |
| C8 |
C24 |
C23 |
N7 |
176.0 |
180.0 |
| C24 |
C23 |
N7 |
H23 |
240.0 |
240.0 |
| C24 |
C23 |
N7 |
H23A |
120.0 |
120.0 |
| N7 |
C23 |
C24 |
H24 |
56.0 |
60.0 |
| N7 |
C23 |
C24 |
H24A |
296.0 |
300.0 |
| H23 |
C23 |
N7 |
H23A |
240.0 |
240.0 |
| C13 |
C8 |
C9 |
C24 |
181.2 |
180.2 |
| C9 |
C8 |
C13 |
C12 |
359.1 |
0.1 |
| C9 |
C8 |
C13 |
H13 |
179.1 |
180.1 |
| C9 |
C8 |
C24 |
C23 |
171.9 |
90.0 |
| C9 |
C8 |
C24 |
H24 |
291.9 |
209.9 |
| C9 |
C8 |
C24 |
H24A |
51.9 |
330.0 |
| C8 |
C9 |
C10 |
C11 |
358.4 |
360.0 |
| C10 |
C9 |
C8 |
H9 |
180.0 |
180.0 |
| C8 |
C9 |
C10 |
H10 |
178.4 |
180.0 |
| C9 |
C8 |
C13 |
C24 |
178.7 |
179.8 |
| C13 |
C8 |
C9 |
C10 |
1.7 |
360.0 |
| C13 |
C8 |
C9 |
H9 |
181.7 |
180.0 |
| C13 |
C8 |
C24 |
C23 |
350.7 |
269.8 |
| C13 |
C8 |
C24 |
H24 |
110.7 |
29.7 |
| C13 |
C8 |
C24 |
H24A |
230.7 |
149.7 |
| C11 |
C12 |
C13 |
C8 |
359.9 |
359.9 |
| C8 |
C13 |
C12 |
H12 |
179.9 |
180.0 |
| C12 |
C13 |
C8 |
H13 |
180.0 |
180.0 |
| N7 |
C23 |
C24 |
C8 |
176.0 |
180.0 |
| C9 |
C8 |
C24 |
C13 |
181.3 |
180.2 |
| C24 |
C8 |
C9 |
C10 |
180.5 |
179.7 |
| C24 |
C8 |
C9 |
H9 |
0.5 |
359.8 |
| C24 |
C8 |
C13 |
C12 |
180.4 |
180.3 |
| C24 |
C8 |
C13 |
H13 |
0.4 |
0.3 |
| C8 |
C24 |
C23 |
H23 |
56.0 |
60.0 |
| C8 |
C24 |
C23 |
H23A |
296.0 |
300.0 |
| C23 |
C24 |
C8 |
H24 |
240.0 |
240.1 |
| C23 |
C24 |
C8 |
H24A |
120.0 |
120.0 |
| H24 |
C24 |
C8 |
H24A |
240.0 |
240.0 |
| C10 |
C9 |
C8 |
C13 |
1.7 |
360.0 |
| C10 |
C9 |
C8 |
C24 |
180.5 |
179.7 |
| C8 |
C9 |
C10 |
H9 |
180.0 |
180.0 |
| C9 |
C10 |
C11 |
C12 |
0.5 |
0.0 |
| C9 |
C10 |
C11 |
S14 |
181.5 |
179.9 |
| C11 |
C10 |
C9 |
H10 |
180.0 |
180.0 |
| C11 |
C10 |
C9 |
H9 |
178.4 |
180.0 |
| C9 |
C10 |
C11 |
H10 |
180.0 |
180.0 |
| C12 |
C11 |
C10 |
S14 |
179.1 |
180.1 |
| C10 |
C11 |
C12 |
C13 |
0.3 |
0.0 |
| C10 |
C11 |
C12 |
H12 |
180.3 |
180.0 |
| C10 |
C11 |
S14 |
O15 |
251.1 |
203.6 |
| C10 |
C11 |
S14 |
O16 |
15.6 |
336.5 |
| C10 |
C11 |
S14 |
N17 |
132.8 |
90.0 |
| C8 |
C13 |
C12 |
C11 |
359.9 |
359.9 |
| C10 |
C11 |
C12 |
S14 |
180.9 |
179.9 |
| C12 |
C11 |
C10 |
H10 |
180.6 |
180.0 |
| C12 |
C11 |
S14 |
O15 |
72.1 |
23.5 |
| C12 |
C11 |
S14 |
O16 |
196.5 |
156.4 |
| C12 |
C11 |
S14 |
N17 |
313.7 |
269.9 |
| C13 |
C12 |
C11 |
H12 |
180.0 |
180.1 |
| C11 |
C12 |
C13 |
H13 |
179.9 |
179.9 |
| C10 |
C11 |
S14 |
C12 |
179.0 |
180.1 |
| S14 |
C11 |
C10 |
H10 |
1.5 |
359.9 |
| S14 |
C11 |
C12 |
C13 |
179.4 |
180.1 |
| S14 |
C11 |
C12 |
H12 |
359.4 |
0.0 |
| O15 |
S14 |
C11 |
O16 |
235.5 |
227.1 |
| O15 |
S14 |
C11 |
N17 |
118.3 |
113.6 |
| O16 |
S14 |
C11 |
N17 |
242.8 |
246.5 |
| C11 |
S14 |
N17 |
HN17 |
180.0 |
149.9 |
| C11 |
S14 |
N17 |
HN1A |
300.0 |
330.1 |
| C12 |
C13 |
C8 |
C24 |
180.4 |
180.3 |
| C8 |
C13 |
C12 |
H13 |
180.0 |
180.0 |
| C13 |
C12 |
C11 |
S14 |
179.4 |
180.1 |
| C11 |
C12 |
C13 |
H12 |
180.0 |
179.9 |
| C11 |
S14 |
O15 |
O16 |
115.5 |
122.9 |
| C11 |
S14 |
O15 |
N17 |
247.5 |
245.9 |
| O16 |
S14 |
O15 |
N17 |
132.0 |
123.0 |
| O15 |
S14 |
N17 |
HN17 |
65.6 |
36.4 |
| O15 |
S14 |
N17 |
HN1A |
185.6 |
216.5 |
| C11 |
S14 |
O16 |
O15 |
242.9 |
237.1 |
| C11 |
S14 |
O16 |
N17 |
110.9 |
114.1 |
| O15 |
S14 |
O16 |
N17 |
228.0 |
237.0 |
| O16 |
S14 |
N17 |
HN17 |
291.0 |
263.5 |
| O16 |
S14 |
N17 |
HN1A |
51.0 |
83.6 |
| C11 |
S14 |
N17 |
O15 |
114.4 |
113.5 |
| C11 |
S14 |
N17 |
O16 |
249.0 |
246.5 |
| O15 |
S14 |
N17 |
O16 |
134.6 |
132.9 |
| HN17 |
N17 |
S14 |
HN1A |
240.0 |
179.9 |
| C5 |
N18 |
O19 |
O20 |
179.6 |
180.1 |
| C5 |
N18 |
O20 |
O19 |
180.4 |
179.9 |
| H22 |
C22 |
O21 |
H22A |
240.0 |
240.1 |
| H22 |
C22 |
O21 |
H22B |
120.1 |
120.0 |
| H22A |
C22 |
O21 |
H22B |
240.1 |
239.9 |
| C24 |
C23 |
N7 |
HN7 |
340.9 |
-0.0 |
| N7 |
C23 |
C24 |
H23 |
120.0 |
120.0 |
| N7 |
C23 |
C24 |
H23A |
240.0 |
240.0 |
| C8 |
C24 |
C23 |
H24 |
120.0 |
120.0 |
| C8 |
C24 |
C23 |
H24A |
240.0 |
240.0 |
| H23 |
C23 |
C24 |
H23A |
120.0 |
120.0 |
| H24 |
C24 |
C23 |
H24A |
120.0 |
120.0 |
| H2 |
C2 |
N1 |
C6 |
180.7 |
180.1 |
| N1 |
C2 |
H2 |
N3 |
180.0 |
180.0 |
| H2 |
C2 |
N3 |
C4 |
179.5 |
179.9 |
| C4 |
N7 |
HN7 |
C23 |
232.6 |
180.0 |
| HN7 |
N7 |
C23 |
C24 |
340.9 |
-0.0 |
| HN7 |
N7 |
C23 |
H23 |
100.9 |
120.0 |
| HN7 |
N7 |
C23 |
H23A |
220.9 |
240.0 |
| H9 |
C9 |
C8 |
C13 |
181.7 |
180.0 |
| H9 |
C9 |
C8 |
C24 |
0.5 |
359.8 |
| C8 |
C9 |
H9 |
C10 |
180.0 |
180.0 |
| H9 |
C9 |
C10 |
C11 |
178.4 |
180.0 |
| H9 |
C9 |
C10 |
H10 |
358.4 |
360.0 |
| C9 |
C10 |
H10 |
C11 |
180.0 |
180.0 |
| H10 |
C10 |
C9 |
H9 |
358.4 |
360.0 |
| H10 |
C10 |
C11 |
C12 |
180.6 |
180.0 |
| H10 |
C10 |
C11 |
S14 |
1.5 |
359.9 |
| H12 |
C12 |
C11 |
S14 |
359.4 |
0.0 |
| C11 |
C12 |
H12 |
C13 |
180.0 |
180.1 |
| H12 |
C12 |
C13 |
H13 |
359.9 |
0.0 |
| H13 |
C13 |
C8 |
C24 |
0.4 |
0.3 |
| C8 |
C13 |
H13 |
C12 |
180.0 |
180.0 |
| H13 |
C13 |
C12 |
H12 |
359.9 |
0.0 |
| S14 |
N17 |
HN17 |
HN1A |
120.0 |
180.1 |
| S14 |
N17 |
HN1A |
HN17 |
240.0 |
179.9 |
| O21 |
C22 |
H22 |
H22A |
120.0 |
119.9 |
| O21 |
C22 |
H22 |
H22B |
240.0 |
240.0 |
| H22A |
C22 |
H22 |
H22B |
120.0 |
120.0 |
| O21 |
C22 |
H22A |
H22 |
240.0 |
240.0 |
| O21 |
C22 |
H22A |
H22B |
120.0 |
120.0 |
| H22 |
C22 |
H22A |
H22B |
240.0 |
240.0 |
| O21 |
C22 |
H22B |
H22 |
120.1 |
120.0 |
| O21 |
C22 |
H22B |
H22A |
240.0 |
240.0 |
| H22 |
C22 |
H22B |
H22A |
120.0 |
120.0 |
| N7 |
C23 |
H23 |
C24 |
244.4 |
240.0 |
| H23 |
C23 |
N7 |
HN7 |
100.9 |
120.0 |
| N7 |
C23 |
H23 |
H23A |
122.2 |
120.0 |
| C24 |
C23 |
H23 |
H23A |
237.8 |
240.0 |
| H23 |
C23 |
C24 |
H24 |
296.0 |
300.0 |
| H23 |
C23 |
C24 |
H24A |
176.0 |
180.0 |
| N7 |
C23 |
H23A |
C24 |
115.6 |
120.0 |
| H23A |
C23 |
N7 |
HN7 |
220.9 |
240.0 |
| N7 |
C23 |
H23A |
H23 |
237.8 |
240.0 |
| C24 |
C23 |
H23A |
H23 |
122.2 |
120.0 |
| H23A |
C23 |
C24 |
H24 |
176.0 |
180.0 |
| H23A |
C23 |
C24 |
H24A |
56.0 |
60.0 |
| C8 |
C24 |
H24 |
C23 |
244.3 |
240.0 |
| C8 |
C24 |
H24 |
H24A |
122.1 |
120.0 |
| H24 |
C24 |
C23 |
H23 |
296.0 |
300.0 |
| H24 |
C24 |
C23 |
H23A |
176.0 |
180.0 |
| C23 |
C24 |
H24 |
H24A |
237.9 |
240.0 |
| C8 |
C24 |
H24A |
C23 |
115.7 |
120.0 |
| C8 |
C24 |
H24A |
H24 |
237.9 |
240.0 |
| H24A |
C24 |
C23 |
H23 |
176.0 |
180.0 |
| H24A |
C24 |
C23 |
H23A |
56.0 |
60.0 |
| C23 |
C24 |
H24A |
H24 |
122.1 |
120.0 |