PDB Chemical Component JRZ

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for JRZ

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1	C2	1.505	1.543
C1	C5	1.540	1.513
N1	C13	1.460	1.469
N1	C15	1.452	1.469
O1	C10	1.436	1.359
O1	C11	1.432	1.429
C2	C3	1.514	1.543
O2	C12	1.410	1.429
C3	C4	1.549	1.513
C4	C5	1.402	1.382
C4	C10	1.404	1.390
C5	C6	1.389	1.386
C6	C7	1.522	1.507
C6	C8	1.390	1.382
C8	C9	1.394	1.381
C9	C10	1.403	1.386
C11	C12	1.554	1.530
C12	C13	1.558	1.530
C13	C14	1.523	1.531
C15	C16	1.522	1.529
C15	C17	1.525	1.530
C1	H1	1.100	1.090
C1	H1A	1.100	1.090
N1	HN1	1.000	1.009
C2	H2	1.100	1.090
C2	H2A	1.100	1.090
O2	HO2	0.949	0.968
C3	H3	1.100	1.090
C3	H3A	1.100	1.090
C7	H7	1.100	1.090
C7	H7A	1.100	1.090
C7	H7B	1.100	1.090
C8	H8	1.080	1.080
C9	H9	1.080	1.080
C11	H11	1.100	1.090
C11	H11A	1.100	1.091
C12	H12	1.100	1.091
C13	H13	1.100	1.089
C14	H14	1.100	1.090
C14	H14A	1.100	1.090
C14	H14B	1.100	1.091
C15	H15	1.100	1.091
C16	H16	1.100	1.091
C16	H16A	1.100	1.090
C16	H16B	1.100	1.090
C17	H17	1.100	1.090
C17	H17A	1.100	1.090
C17	H17B	1.100	1.090

Bond Angles for JRZ

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C2	C1	C5	101.6	105.2
C1	C2	C3	107.5	102.4
C2	C1	H1	112.2	110.3
C2	C1	H1A	112.2	110.3
C1	C2	H2	110.1	110.9
C1	C2	H2A	110.1	110.8
C1	C5	C4	110.3	109.7
C1	C5	C6	129.9	130.4
C5	C1	H1	112.2	110.4
C5	C1	H1A	112.2	110.3
C13	N1	C15	114.0	111.0
N1	C13	C12	108.7	109.5
N1	C13	C14	108.0	109.5
C13	N1	HN1	108.0	110.9
N1	C13	H13	111.5	109.5
N1	C15	C16	108.9	109.5
N1	C15	C17	109.8	109.4
C15	N1	HN1	108.0	111.0
N1	C15	H15	109.2	109.5
C10	O1	C11	121.9	117.0
O1	C10	C4	119.9	119.9
O1	C10	C9	120.3	120.0
O1	C11	C12	110.3	109.5
O1	C11	H11	109.2	109.5
O1	C11	H11A	109.2	109.4
C2	C3	C4	101.8	105.2
C3	C2	H2	110.1	110.8
C3	C2	H2A	110.1	110.8
C2	C3	H3	112.1	110.3
C2	C3	H3A	112.1	110.3
O2	C12	C11	108.8	109.5
O2	C12	C13	110.2	109.5
C12	O2	HO2	109.5	114.0
O2	C12	H12	110.6	109.5
C3	C4	C5	108.8	109.8
C3	C4	C10	131.2	130.4
C4	C3	H3	112.1	110.3
C4	C3	H3A	112.1	110.3
C5	C4	C10	119.8	119.8
C4	C5	C6	119.8	119.9
C4	C10	C9	119.7	120.1
C5	C6	C7	119.8	119.8
C5	C6	C8	120.7	120.3
C7	C6	C8	119.5	119.8
C6	C7	H7	109.5	109.5
C6	C7	H7A	109.5	109.5
C6	C7	H7B	109.4	109.5
C6	C8	C9	120.0	120.0
C6	C8	H8	120.0	120.0
C8	C9	C10	120.0	119.9
C9	C8	H8	120.0	120.0
C8	C9	H9	120.0	120.0
C10	C9	H9	120.0	120.1
C11	C12	C13	112.6	109.5
C12	C11	H11	109.2	109.5
C12	C11	H11A	109.2	109.5
C11	C12	H12	108.1	109.5
C12	C13	C14	111.1	109.4
C13	C12	H12	106.6	109.5
C12	C13	H13	108.5	109.5
C14	C13	H13	109.1	109.5
C13	C14	H14	109.5	109.5
C13	C14	H14A	109.5	109.4
C13	C14	H14B	109.5	109.4
C16	C15	C17	108.0	109.5
C16	C15	H15	110.9	109.5
C15	C16	H16	109.5	109.5
C15	C16	H16A	109.5	109.5
C15	C16	H16B	109.4	109.5
C17	C15	H15	110.0	109.5
C15	C17	H17	109.5	109.5
C15	C17	H17A	109.5	109.5
C15	C17	H17B	109.5	109.5
H1	C1	H1A	106.6	110.3
H2	C2	H2A	108.8	110.9
H3	C3	H3A	106.7	110.3
H7	C7	H7A	109.5	109.5
H7	C7	H7B	109.5	109.4
H7A	C7	H7B	109.5	109.5
H11	C11	H11A	109.7	109.4
H14	C14	H14A	109.5	109.5
H14	C14	H14B	109.5	109.5
H14A	C14	H14B	109.5	109.4
H16	C16	H16A	109.5	109.5
H16	C16	H16B	109.5	109.4
H16A	C16	H16B	109.5	109.4
H17	C17	H17A	109.5	109.4
H17	C17	H17B	109.5	109.5
H17A	C17	H17B	109.5	109.5

Torsion Angles for JRZ

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C2	C1	C5	C4	18.8	17.3
C2	C1	C5	C6	201.1	197.2
C5	C1	C2	H1	240.0	241.0
C5	C1	C2	H1A	120.0	118.9
C1	C2	C3	C4	30.7	26.3
C3	C2	C1	H2	240.0	241.8
C3	C2	C1	H2A	120.0	118.2
C1	C2	C3	H3	150.7	145.3
C1	C2	C3	H3A	270.7	267.4
H1	C1	C2	H1A	240.0	237.9
H2	C2	C1	H2A	240.0	236.4
C5	C1	C2	C3	329.4	333.6
C2	C1	C5	H1	120.0	119.0
C2	C1	C5	H1A	240.0	241.1
C5	C1	C2	H2	89.4	91.9
C5	C1	C2	H2A	209.4	215.4
C3	C4	C5	C1	359.9	359.9
C1	C5	C4	C10	183.1	180.0
C4	C5	C1	C6	177.7	180.1
C1	C5	C6	C7	358.8	0.0
C1	C5	C6	C8	178.2	180.0
H1	C1	C5	H1A	120.0	122.1
C13	N1	C15	C16	141.1	84.9
C13	N1	C15	C17	259.2	205.0
C15	N1	C13	HN1	240.0	236.1
C13	N1	C15	H15	19.9	324.9
O2	C12	C13	N1	317.1	295.1
C11	C12	C13	N1	195.4	175.0
C12	C13	N1	C14	120.6	119.9
N1	C13	C12	H12	77.1	55.1
C12	C13	N1	H13	240.5	239.9
C14	C13	N1	H13	119.9	120.0
N1	C13	C14	H14	180.0	180.0
N1	C13	C14	H14A	300.0	300.0
N1	C13	C14	H14B	60.0	59.9
C15	N1	C13	C12	205.5	205.0
C15	N1	C13	C14	84.9	85.1
C13	N1	C15	HN1	120.0	123.8
C15	N1	C13	H13	325.1	325.1
C16	C15	N1	C17	241.9	240.0
C16	C15	N1	H15	121.2	120.0
N1	C15	C16	H16	180.0	60.0
N1	C15	C16	H16A	300.0	180.0
N1	C15	C16	H16B	60.0	300.0
C17	C15	N1	H15	239.3	240.0
N1	C15	C17	H17	180.0	60.0
N1	C15	C17	H17A	300.0	179.9
N1	C15	C17	H17B	60.0	300.0
C10	O1	C11	C12	156.9	180.0
C10	O1	C11	H11	276.9	300.1
C10	O1	C11	H11A	36.9	60.0
C3	C4	C10	O1	5.3	0.1
C5	C4	C10	O1	181.2	180.0
C4	C10	O1	C9	176.4	180.0
C8	C9	C10	O1	178.3	180.0
O1	C10	C9	H9	358.3	0.0
C11	O1	C10	C4	199.8	179.9
C11	O1	C10	C9	23.4	359.9
O2	C12	C11	O1	176.6	65.0
O1	C11	C12	C13	299.0	185.1
C12	C11	O1	H11	240.0	239.9
C12	C11	O1	H11A	120.0	120.0
O1	C11	C12	H12	56.5	305.0
H11	C11	O1	H11A	240.0	240.1
C3	C2	C1	C5	329.4	333.6
C3	C2	C1	H1	89.4	92.6
C3	C2	C1	H1A	209.4	214.7
C1	C2	C3	H2	120.0	118.3
C1	C2	C3	H2A	240.0	241.8
C2	C3	C4	C5	341.5	342.9
C2	C3	C4	C10	157.8	162.8
C4	C3	C2	H3	240.0	241.0
C4	C3	C2	H3A	120.0	118.9
H2	C2	C3	H2A	120.0	123.5
H3	C3	C2	H3A	240.0	237.8
N1	C13	C12	O2	317.1	295.1
O1	C11	C12	O2	176.6	65.0
C11	C12	O2	C13	123.9	120.0
O2	C12	C11	H11	56.5	304.9
O2	C12	C11	H11A	296.5	185.0
C11	C12	O2	H12	241.5	240.0
O2	C12	C13	C14	75.8	55.0
C13	C12	O2	H12	117.6	120.0
O2	C12	C13	H13	195.7	175.0
C1	C5	C4	C3	359.9	359.9
O1	C10	C4	C3	5.3	0.1
C4	C3	C2	H2	270.7	268.1
C4	C3	C2	H2A	150.7	144.5
C2	C3	C4	H3	120.0	119.0
C2	C3	C4	H3A	240.0	241.1
C5	C4	C3	C10	183.7	180.1
C3	C4	C5	C6	177.8	180.0
C3	C4	C10	C9	181.7	180.1
H3	C3	C4	H3A	120.0	122.1
C1	C5	C4	C6	182.1	179.9
C4	C5	C1	H1	258.8	258.3
C4	C5	C1	H1A	138.8	136.1
O1	C10	C4	C5	181.2	180.0
C3	C4	C5	C10	176.8	179.9
C5	C4	C3	H3	221.5	223.9
C5	C4	C3	H3A	101.5	101.8
C5	C4	C10	C9	357.7	360.0
C4	C5	C6	C7	181.4	180.0
C4	C5	C6	C8	0.7	359.9
C4	C10	O1	C11	199.8	179.9
O1	C10	C4	C9	183.6	180.0
C3	C4	C10	C5	184.0	180.1
C10	C4	C3	H3	37.8	43.8
C10	C4	C3	H3A	277.8	281.7
C10	C4	C5	C6	1.0	0.0
C8	C9	C10	C4	1.9	0.0
C4	C10	C9	H9	181.9	180.0
C1	C5	C6	C4	177.5	180.1
C6	C5	C1	H1	81.1	78.2
C6	C5	C1	H1A	321.1	316.1
C6	C5	C4	C10	1.0	0.0
C7	C6	C5	C8	180.6	180.1
C5	C6	C7	H7	89.7	89.9
C5	C6	C7	H7A	209.7	210.0
C5	C6	C7	H7B	329.7	330.0
C5	C6	C8	C9	358.8	0.1
C5	C6	C8	H8	178.8	180.0
C5	C6	C7	C8	179.4	179.9
C7	C6	C8	C9	178.2	180.0
C7	C6	C8	H8	358.2	360.0
H7	C7	C6	H7A	240.0	240.0
H7	C7	C6	H7B	120.0	119.9
H7A	C7	C6	H7B	240.0	240.0
C5	C6	C8	C7	180.6	180.1
C8	C6	C7	H7	270.3	270.0
C8	C6	C7	H7A	30.3	30.0
C8	C6	C7	H7B	150.3	150.1
C6	C8	C9	C10	359.9	360.0
C9	C8	C6	H8	180.0	180.0
C6	C8	C9	H9	179.9	180.0
O1	C10	C9	C8	178.3	180.0
C4	C10	C9	C8	1.9	0.0
C6	C8	C9	H8	180.0	180.0
C10	C9	C8	H9	180.0	180.0
C9	C10	O1	C11	23.4	359.9
O1	C10	C9	C4	176.4	180.0
C10	C9	C8	H8	179.9	180.0
C8	C9	C10	H9	180.0	180.0
N1	C13	C12	C11	195.4	175.0
O1	C11	C12	H11	120.0	120.1
O1	C11	C12	H11A	240.0	240.0
O2	C12	C11	C13	237.5	239.9
C11	C12	O2	HO2	180.0	60.1
O2	C12	C11	H12	120.1	120.0
C11	C12	C13	C14	314.2	295.0
C13	C12	C11	H12	242.6	240.0
C11	C12	C13	H13	74.1	55.0
H11	C11	C12	H11A	120.0	119.9
C12	C13	N1	C15	205.5	205.0
N1	C13	C12	C14	241.3	240.0
C12	C13	N1	HN1	325.6	328.9
N1	C13	C12	H13	121.4	120.0
O2	C12	C13	C11	121.7	120.0
C13	C12	O2	HO2	56.1	300.0
O2	C12	C13	H12	240.0	240.0
C13	C12	C11	H11	179.0	65.0
C13	C12	C11	H11A	59.0	305.0
C11	C12	C13	H12	118.3	120.0
C14	C13	C12	H13	240.1	240.0
C12	C13	C14	H14	60.9	60.0
C12	C13	C14	H14A	180.9	180.1
C12	C13	C14	H14B	300.8	300.0
C14	C13	N1	C15	84.9	85.1
N1	C13	C14	C12	119.1	120.0
C14	C13	N1	HN1	204.9	208.9
N1	C13	C14	H13	238.7	240.0
C14	C13	C12	H12	195.9	175.0
C12	C13	C14	H13	119.5	120.0
H14	C14	C13	H14A	240.0	240.0
H14	C14	C13	H14B	120.0	120.0
H14A	C14	C13	H14B	240.0	240.1
N1	C15	C16	C17	119.2	120.0
C16	C15	N1	HN1	21.1	321.1
N1	C15	C16	H15	239.8	240.0
C17	C15	C16	H15	120.6	120.0
C16	C15	C17	H17	298.7	180.1
C16	C15	C17	H17A	58.7	300.0
C16	C15	C17	H17B	178.7	60.0
H16	C16	C15	H16A	240.0	240.0
H16	C16	C15	H16B	120.0	120.0
H16A	C16	C15	H16B	240.0	240.0
N1	C15	C17	C16	241.3	240.0
C17	C15	N1	HN1	139.3	81.1
N1	C15	C17	H15	120.2	120.0
C16	C15	C17	H15	238.8	240.0
C17	C15	C16	H16	60.8	300.0
C17	C15	C16	H16A	180.8	60.0
C17	C15	C16	H16B	300.8	180.0
H17	C17	C15	H17A	240.0	240.1
H17	C17	C15	H17B	120.0	120.0
H17A	C17	C15	H17B	240.0	239.9
C2	C1	H1	C5	246.4	244.2
H1	C1	C2	C3	89.4	92.6
C2	C1	H1	H1A	123.2	122.1
H1	C1	C2	H2	209.3	210.9
H1	C1	C2	H2A	329.4	334.4
H1	C1	C5	C4	258.8	258.3
H1	C1	C5	C6	81.1	78.2
C5	C1	H1	H1A	236.8	237.8
C2	C1	H1A	C5	113.6	115.7
H1A	C1	C2	C3	209.4	214.7
C2	C1	H1A	H1	236.8	237.9
H1A	C1	C2	H2	329.4	332.9
H1A	C1	C2	H2A	89.4	96.5
H1A	C1	C5	C4	138.8	136.1
H1A	C1	C5	C6	321.1	316.1
C5	C1	H1A	H1	123.2	122.2
C13	N1	HN1	C15	236.3	236.2
HN1	N1	C13	C12	325.6	328.9
HN1	N1	C13	C14	204.9	208.9
HN1	N1	C13	H13	85.1	88.9
HN1	N1	C15	C16	21.1	321.1
HN1	N1	C15	C17	139.3	81.1
HN1	N1	C15	H15	259.9	201.1
H2	C2	C1	C5	89.4	91.9
C1	C2	H2	C3	241.6	247.0
H2	C2	C1	H1	209.3	210.9
H2	C2	C1	H1A	329.4	332.9
C1	C2	H2	H2A	120.8	123.5
H2	C2	C3	C4	270.7	268.1
C3	C2	H2	H2A	239.2	236.5
H2	C2	C3	H3	30.7	27.0
H2	C2	C3	H3A	150.7	149.2
H2A	C2	C1	C5	209.4	215.4
C1	C2	H2A	C3	118.4	112.9
H2A	C2	C1	H1	329.4	334.4
H2A	C2	C1	H1A	89.4	96.5
C1	C2	H2A	H2	239.2	236.4
H2A	C2	C3	C4	150.7	144.5
C3	C2	H2A	H2	120.8	123.5
H2A	C2	C3	H3	270.7	263.5
H2A	C2	C3	H3A	30.7	25.7
HO2	O2	C12	C11	180.0	60.1
HO2	O2	C12	C13	56.1	300.0
HO2	O2	C12	H12	298.5	180.0
C2	C3	H3	C4	246.2	244.2
H3	C3	C2	H2	30.7	27.0
H3	C3	C2	H2A	270.7	263.5
C2	C3	H3	H3A	123.1	122.2
H3	C3	C4	C5	221.5	223.9
H3	C3	C4	C10	37.8	43.8
C4	C3	H3	H3A	236.9	237.9
C2	C3	H3A	C4	113.8	115.7
H3A	C3	C2	H2	150.7	149.2
H3A	C3	C2	H2A	30.7	25.7
C2	C3	H3A	H3	236.9	237.8
H3A	C3	C4	C5	101.5	101.8
H3A	C3	C4	C10	277.8	281.7
C4	C3	H3A	H3	123.1	122.1
H7	C7	C6	C8	270.3	270.0
C6	C7	H7	H7A	120.0	120.1
C6	C7	H7	H7B	240.0	240.0
H7A	C7	H7	H7B	120.0	120.0
H7A	C7	C6	C8	30.3	30.0
C6	C7	H7A	H7	240.0	239.9
C6	C7	H7A	H7B	120.0	120.0
H7	C7	H7A	H7B	240.0	240.1
H7B	C7	C6	C8	150.3	150.1
C6	C7	H7B	H7	120.0	120.0
C6	C7	H7B	H7A	240.0	240.0
H7	C7	H7B	H7A	120.0	120.0
C6	C8	H8	C9	180.0	180.0
H8	C8	C9	C10	179.9	180.0
H8	C8	C9	H9	359.9	0.0
C8	C9	H9	C10	180.0	180.0
H9	C9	C8	H8	359.9	0.0
O1	C11	H11	C12	239.3	239.9
O1	C11	H11	H11A	119.7	119.9
H11	C11	C12	C13	179.0	65.0
C12	C11	H11	H11A	240.3	240.0
H11	C11	C12	H12	296.5	184.9
O1	C11	H11A	C12	120.6	120.0
O1	C11	H11A	H11	240.3	240.0
H11A	C11	C12	C13	59.0	305.0
C12	C11	H11A	H11	119.7	120.0
H11A	C11	C12	H12	176.5	65.0
O2	C12	H12	C11	241.0	240.0
O2	C12	H12	C13	119.8	120.1
H12	C12	O2	HO2	298.5	180.0
C11	C12	H12	C13	238.7	240.0
H12	C12	C11	H11	296.5	184.9
H12	C12	C11	H11A	176.5	65.0
H12	C12	C13	C14	195.9	175.0
H12	C12	C13	H13	315.7	295.0
H13	C13	N1	C15	325.1	325.1
N1	C13	H13	C12	240.3	240.0
N1	C13	H13	C14	119.2	120.0
H13	C13	N1	HN1	85.1	88.9
C12	C13	H13	C14	238.9	240.0
H13	C13	C12	H12	315.7	295.0
H13	C13	C14	H14	301.3	300.0
H13	C13	C14	H14A	61.3	60.0
H13	C13	C14	H14B	181.3	179.9
H14	C14	C13	H13	301.3	300.0
C13	C14	H14	H14A	120.0	120.0
C13	C14	H14	H14B	240.0	240.0
H14A	C14	H14	H14B	120.0	120.0
H14A	C14	C13	H13	61.3	60.0
C13	C14	H14A	H14	240.0	240.0
C13	C14	H14A	H14B	120.0	119.9
H14	C14	H14A	H14B	240.0	239.9
H14B	C14	C13	H13	181.3	179.9
C13	C14	H14B	H14	120.0	120.0
C13	C14	H14B	H14A	240.0	240.1
H14	C14	H14B	H14A	120.0	120.1
N1	C15	H15	C16	120.0	120.0
N1	C15	H15	C17	239.5	240.1
H15	C15	N1	HN1	259.9	201.1
C16	C15	H15	C17	119.5	120.0
H15	C15	C16	H16	300.2	180.0
H15	C15	C16	H16A	60.2	300.0
H15	C15	C16	H16B	180.2	60.0
H15	C15	C17	H17	59.8	300.1
H15	C15	C17	H17A	179.8	60.0
H15	C15	C17	H17B	299.8	180.0
H16	C16	C15	C17	60.8	300.0
H16	C16	C15	H15	300.2	180.0
C15	C16	H16	H16A	120.0	120.0
C15	C16	H16	H16B	240.0	240.0
H16A	C16	H16	H16B	120.0	119.9
H16A	C16	C15	C17	180.8	60.0
H16A	C16	C15	H15	60.2	300.0
C15	C16	H16A	H16	240.0	240.0
C15	C16	H16A	H16B	120.0	120.0
H16	C16	H16A	H16B	240.0	240.1
H16B	C16	C15	C17	300.8	180.0
H16B	C16	C15	H15	180.2	60.0
C15	C16	H16B	H16	120.0	120.0
C15	C16	H16B	H16A	240.0	240.0
H16	C16	H16B	H16A	120.0	120.0
H17	C17	C15	H15	59.8	300.1
C15	C17	H17	H17A	120.0	120.0
C15	C17	H17	H17B	240.0	240.0
H17A	C17	H17	H17B	120.0	120.0
H17A	C17	C15	H15	179.8	60.0
C15	C17	H17A	H17	240.0	240.0
C15	C17	H17A	H17B	120.0	120.0
H17	C17	H17A	H17B	240.0	240.0
H17B	C17	C15	H15	299.8	180.0
C15	C17	H17B	H17	120.0	120.0
C15	C17	H17B	H17A	240.0	240.0
H17	C17	H17B	H17A	120.0	119.9