PDB Chemical Component JPL
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for JPL
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C14 |
C15 |
1.705 |
1.530 |
| C14 |
C19 |
1.756 |
1.530 |
| C15 |
C16 |
1.462 |
1.530 |
| C16 |
C17 |
1.372 |
1.530 |
| C19 |
C13 |
1.354 |
1.530 |
| C13 |
C17 |
1.381 |
1.530 |
| C13 |
C18 |
1.512 |
1.530 |
| C18 |
C6 |
1.505 |
1.508 |
| C5 |
C4 |
1.393 |
1.382 |
| C5 |
C6 |
1.392 |
1.382 |
| C4 |
C3 |
1.386 |
1.386 |
| C6 |
C1 |
1.393 |
1.383 |
| C10 |
C9 |
1.400 |
1.381 |
| C10 |
C11 |
1.402 |
1.384 |
| C9 |
C8 |
1.404 |
1.388 |
| CL5 |
C11 |
1.539 |
1.735 |
| C11 |
C12 |
1.408 |
1.384 |
| C3 |
O1 |
1.388 |
1.360 |
| C3 |
C2 |
1.388 |
1.392 |
| C1 |
C2 |
1.399 |
1.385 |
| C8 |
O1 |
1.374 |
1.359 |
| C8 |
C7 |
1.397 |
1.388 |
| C2 |
O2 |
1.349 |
1.360 |
| C12 |
C7 |
1.419 |
1.382 |
| C7 |
CL1 |
1.524 |
1.736 |
| C4 |
H1 |
1.080 |
1.080 |
| C5 |
H2 |
1.080 |
1.080 |
| C9 |
H3 |
1.080 |
1.080 |
| C10 |
H4 |
1.080 |
1.080 |
| C12 |
H5 |
1.080 |
1.080 |
| C15 |
H6 |
1.101 |
1.090 |
| C15 |
H7 |
1.100 |
1.090 |
| C16 |
H8 |
1.100 |
1.090 |
| C16 |
H9 |
1.100 |
1.090 |
| C18 |
H10 |
1.100 |
1.089 |
| C18 |
H11 |
1.100 |
1.090 |
| C19 |
H12 |
1.100 |
1.090 |
| C19 |
H13 |
1.100 |
1.090 |
| O2 |
H14 |
0.950 |
0.966 |
| C1 |
H15 |
1.080 |
1.080 |
| C14 |
H16 |
1.100 |
1.089 |
| C14 |
H17 |
1.100 |
1.089 |
| C17 |
H18 |
1.100 |
1.090 |
| C13 |
H19 |
1.100 |
1.090 |
| C17 |
H20 |
1.100 |
1.090 |
Bond Angles for JPL
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C14 |
C15 |
H6 |
113.7 |
109.5 |
| C14 |
C15 |
H7 |
113.7 |
109.5 |
| C14 |
C19 |
H12 |
110.1 |
109.5 |
| C14 |
C19 |
H13 |
110.1 |
109.5 |
| C15 |
C16 |
C17 |
124.8 |
109.4 |
| C16 |
C15 |
H6 |
113.7 |
109.4 |
| C16 |
C15 |
H7 |
113.7 |
109.5 |
| C15 |
C16 |
H8 |
105.5 |
109.5 |
| C15 |
C16 |
H9 |
105.5 |
109.5 |
| C16 |
C17 |
C13 |
123.2 |
109.5 |
| C17 |
C16 |
H8 |
105.5 |
109.5 |
| C17 |
C16 |
H9 |
105.5 |
109.5 |
| C16 |
C17 |
H18 |
105.9 |
109.5 |
| C16 |
C17 |
H20 |
105.9 |
109.5 |
| C19 |
C13 |
C17 |
115.3 |
109.5 |
| C13 |
C19 |
H12 |
110.1 |
109.4 |
| C13 |
C19 |
H13 |
110.1 |
109.5 |
| C19 |
C13 |
H19 |
92.6 |
109.4 |
| C13 |
C17 |
H18 |
105.9 |
109.5 |
| C17 |
C13 |
H19 |
92.6 |
109.5 |
| C13 |
C17 |
H20 |
105.9 |
109.5 |
| C13 |
C18 |
H10 |
107.5 |
109.5 |
| C13 |
C18 |
H11 |
107.5 |
109.4 |
| C5 |
C6 |
C18 |
119.1 |
119.9 |
| C18 |
C6 |
C1 |
121.2 |
119.9 |
| C6 |
C18 |
H10 |
107.5 |
109.5 |
| C6 |
C18 |
H11 |
107.5 |
109.4 |
| C5 |
C4 |
H1 |
119.7 |
120.0 |
| C5 |
C6 |
C1 |
119.6 |
120.2 |
| C6 |
C5 |
H2 |
119.8 |
119.9 |
| C4 |
C3 |
O1 |
120.9 |
120.0 |
| C6 |
C1 |
H15 |
120.4 |
120.0 |
| C10 |
C9 |
H3 |
119.8 |
120.0 |
| C10 |
C11 |
C12 |
117.8 |
120.1 |
| C11 |
C10 |
H4 |
119.4 |
120.0 |
| C9 |
C8 |
O1 |
120.6 |
120.0 |
| C11 |
C12 |
H5 |
119.1 |
120.0 |
| C3 |
O1 |
C8 |
123.3 |
118.0 |
| C3 |
C2 |
O2 |
118.7 |
120.1 |
| C8 |
C7 |
CL1 |
119.2 |
120.0 |
| C2 |
O2 |
H14 |
109.5 |
114.1 |
| C12 |
C7 |
CL1 |
121.9 |
120.0 |
| H6 |
C15 |
H7 |
109.5 |
109.4 |
| H8 |
C16 |
H9 |
109.5 |
109.5 |
| H10 |
C18 |
H11 |
109.5 |
109.5 |
| H12 |
C19 |
H13 |
109.4 |
109.5 |
| H16 |
C14 |
H17 |
109.5 |
109.5 |
| H18 |
C17 |
H20 |
109.5 |
109.4 |
Torsion Angles for JPL
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C14 |
C15 |
C16 |
C17 |
55.9 |
60.1 |
| C16 |
C15 |
C14 |
H6 |
243.1 |
119.9 |
| C16 |
C15 |
C14 |
H7 |
116.9 |
239.9 |
| C14 |
C15 |
C16 |
H8 |
178.0 |
180.0 |
| C14 |
C15 |
C16 |
H9 |
293.9 |
300.0 |
| H6 |
C15 |
C14 |
H7 |
233.8 |
120.0 |
| C19 |
C14 |
C15 |
H6 |
44.9 |
180.0 |
| C19 |
C14 |
C15 |
H7 |
171.1 |
60.0 |
| C14 |
C19 |
C13 |
C17 |
317.6 |
300.0 |
| C13 |
C19 |
C14 |
H12 |
240.4 |
120.0 |
| C13 |
C19 |
C14 |
H13 |
119.6 |
240.0 |
| C14 |
C19 |
C13 |
H19 |
51.7 |
60.0 |
| H12 |
C19 |
C14 |
H13 |
239.2 |
120.0 |
| C14 |
C15 |
C16 |
H6 |
116.9 |
240.0 |
| C14 |
C15 |
C16 |
H7 |
243.1 |
120.1 |
| C15 |
C16 |
C17 |
C13 |
335.5 |
300.0 |
| C17 |
C16 |
C15 |
H8 |
237.9 |
240.0 |
| C17 |
C16 |
C15 |
H9 |
122.1 |
120.0 |
| C15 |
C16 |
C17 |
H18 |
97.4 |
60.0 |
| C15 |
C16 |
C17 |
H20 |
213.7 |
180.0 |
| H6 |
C15 |
C16 |
H7 |
126.2 |
240.1 |
| H8 |
C16 |
C15 |
H9 |
244.1 |
240.0 |
| C17 |
C16 |
C15 |
H6 |
299.0 |
180.0 |
| C17 |
C16 |
C15 |
H7 |
172.8 |
300.0 |
| C15 |
C16 |
C17 |
H8 |
122.1 |
120.0 |
| C15 |
C16 |
C17 |
H9 |
238.0 |
240.0 |
| C19 |
C13 |
C17 |
C16 |
14.5 |
60.0 |
| C13 |
C17 |
C16 |
H18 |
238.1 |
240.0 |
| C16 |
C17 |
C13 |
H19 |
280.3 |
300.0 |
| C13 |
C17 |
C16 |
H20 |
121.9 |
120.0 |
| H8 |
C16 |
C17 |
H9 |
115.9 |
120.0 |
| H18 |
C17 |
C16 |
H20 |
243.8 |
240.0 |
| C14 |
C19 |
C13 |
H12 |
119.6 |
240.0 |
| C14 |
C19 |
C13 |
H13 |
240.4 |
120.0 |
| C16 |
C17 |
C13 |
C19 |
14.5 |
60.0 |
| C19 |
C13 |
C17 |
H18 |
252.6 |
299.9 |
| C17 |
C13 |
C19 |
H19 |
265.9 |
240.0 |
| C19 |
C13 |
C17 |
H20 |
136.3 |
180.0 |
| C19 |
C13 |
C18 |
H10 |
306.3 |
65.0 |
| C19 |
C13 |
C18 |
H11 |
64.1 |
305.0 |
| H12 |
C19 |
C13 |
H13 |
120.8 |
240.0 |
| C13 |
C17 |
C16 |
H8 |
213.4 |
180.0 |
| C13 |
C17 |
C16 |
H9 |
97.6 |
60.0 |
| C16 |
C17 |
C13 |
H18 |
121.9 |
120.0 |
| C16 |
C17 |
C13 |
H20 |
238.1 |
240.0 |
| C17 |
C13 |
C19 |
H12 |
198.0 |
60.0 |
| C17 |
C13 |
C19 |
H13 |
77.2 |
180.0 |
| C19 |
C13 |
C17 |
H19 |
94.1 |
119.9 |
| C17 |
C13 |
C18 |
H10 |
135.5 |
305.0 |
| C17 |
C13 |
C18 |
H11 |
253.3 |
185.0 |
| H18 |
C17 |
C13 |
H20 |
116.2 |
120.0 |
| C16 |
C17 |
C13 |
C18 |
185.5 |
180.0 |
| C6 |
C18 |
C13 |
H10 |
238.9 |
120.0 |
| C6 |
C18 |
C13 |
H11 |
121.1 |
240.1 |
| H10 |
C18 |
C13 |
H11 |
242.2 |
120.0 |
| C13 |
C18 |
C6 |
H10 |
121.1 |
240.0 |
| C13 |
C18 |
C6 |
H11 |
238.9 |
119.9 |
| C5 |
C6 |
C18 |
C1 |
182.8 |
180.2 |
| C18 |
C6 |
C5 |
H2 |
358.6 |
0.0 |
| C18 |
C6 |
C1 |
H15 |
1.5 |
0.0 |
| H10 |
C18 |
C6 |
H11 |
117.8 |
240.0 |
| C5 |
C4 |
C3 |
O1 |
180.5 |
180.1 |
| C18 |
C6 |
C5 |
C1 |
177.3 |
179.8 |
| C5 |
C6 |
C18 |
H10 |
327.7 |
210.0 |
| C5 |
C6 |
C18 |
H11 |
209.9 |
330.0 |
| C6 |
C5 |
C4 |
H1 |
179.7 |
180.0 |
| C5 |
C6 |
C1 |
H15 |
178.7 |
179.8 |
| C4 |
C3 |
O1 |
C8 |
279.7 |
260.9 |
| C4 |
C3 |
C2 |
O2 |
180.0 |
180.1 |
| C5 |
C6 |
C1 |
C18 |
177.2 |
179.8 |
| C1 |
C6 |
C18 |
H10 |
145.0 |
29.8 |
| C1 |
C6 |
C18 |
H11 |
27.2 |
149.8 |
| C1 |
C6 |
C5 |
H2 |
181.3 |
180.3 |
| C10 |
C9 |
C8 |
O1 |
178.6 |
180.0 |
| C11 |
C10 |
C9 |
H3 |
180.1 |
180.0 |
| C10 |
C11 |
C12 |
H5 |
179.6 |
180.0 |
| C3 |
O1 |
C8 |
C9 |
355.3 |
5.6 |
| C9 |
C8 |
C7 |
CL1 |
179.5 |
180.0 |
| CL5 |
C11 |
C10 |
H4 |
1.2 |
360.0 |
| CL5 |
C11 |
C12 |
H5 |
358.5 |
359.8 |
| C12 |
C11 |
C10 |
H4 |
180.2 |
179.8 |
| C11 |
C12 |
C7 |
CL1 |
180.8 |
179.8 |
| C9 |
C8 |
O1 |
C3 |
355.3 |
5.6 |
| O1 |
C3 |
C2 |
O2 |
358.8 |
0.0 |
| C3 |
C2 |
O2 |
H14 |
180.0 |
90.0 |
| C1 |
C2 |
O2 |
H14 |
359.2 |
270.3 |
| O1 |
C8 |
C7 |
CL1 |
0.8 |
359.9 |
| C3 |
O1 |
C8 |
C7 |
174.1 |
185.7 |
| C12 |
C7 |
C8 |
CL1 |
180.4 |
180.3 |
| C8 |
C7 |
C12 |
CL1 |
179.5 |
179.7 |
| H1 |
C4 |
C3 |
O1 |
0.5 |
0.0 |
| H2 |
C5 |
C6 |
C18 |
358.6 |
0.0 |
| H2 |
C5 |
C4 |
H1 |
359.7 |
0.1 |
| H2 |
C5 |
C6 |
C1 |
181.3 |
180.3 |
| H3 |
C9 |
C8 |
O1 |
358.6 |
360.0 |
| H4 |
C10 |
C9 |
H3 |
0.1 |
0.0 |
| H4 |
C10 |
C11 |
C12 |
180.2 |
179.8 |
| H5 |
C12 |
C7 |
CL1 |
0.8 |
0.2 |
| C14 |
C15 |
H6 |
H7 |
128.4 |
239.9 |
| H6 |
C15 |
C16 |
C17 |
299.0 |
180.0 |
| C16 |
C15 |
H6 |
H7 |
231.6 |
120.0 |
| H6 |
C15 |
C16 |
H8 |
61.1 |
300.0 |
| H6 |
C15 |
C16 |
H9 |
177.0 |
60.0 |
| C14 |
C15 |
H7 |
H6 |
231.6 |
120.0 |
| H7 |
C15 |
C16 |
C17 |
172.8 |
300.0 |
| C16 |
C15 |
H7 |
H6 |
128.4 |
240.1 |
| H7 |
C15 |
C16 |
H8 |
294.9 |
59.9 |
| H7 |
C15 |
C16 |
H9 |
50.8 |
179.9 |
| C15 |
C16 |
H8 |
C17 |
226.2 |
240.0 |
| H8 |
C16 |
C15 |
H6 |
61.1 |
300.0 |
| H8 |
C16 |
C15 |
H7 |
294.9 |
59.9 |
| C15 |
C16 |
H8 |
H9 |
113.1 |
120.0 |
| H8 |
C16 |
C17 |
C13 |
213.4 |
180.0 |
| C17 |
C16 |
H8 |
H9 |
246.9 |
240.0 |
| H8 |
C16 |
C17 |
H18 |
335.4 |
300.0 |
| H8 |
C16 |
C17 |
H20 |
91.6 |
60.0 |
| C15 |
C16 |
H9 |
C17 |
133.8 |
120.0 |
| H9 |
C16 |
C15 |
H6 |
177.0 |
60.0 |
| H9 |
C16 |
C15 |
H7 |
50.8 |
179.9 |
| C15 |
C16 |
H9 |
H8 |
246.9 |
240.0 |
| H9 |
C16 |
C17 |
C13 |
97.6 |
60.0 |
| C17 |
C16 |
H9 |
H8 |
113.1 |
120.0 |
| H9 |
C16 |
C17 |
H18 |
219.5 |
180.0 |
| H9 |
C16 |
C17 |
H20 |
335.7 |
300.0 |
| C13 |
C18 |
H10 |
H11 |
116.5 |
240.0 |
| H10 |
C18 |
C6 |
C1 |
145.0 |
29.8 |
| C6 |
C18 |
H10 |
H11 |
243.5 |
120.0 |
| C13 |
C18 |
H11 |
H10 |
243.5 |
120.0 |
| H11 |
C18 |
C6 |
C1 |
27.2 |
149.8 |
| C6 |
C18 |
H11 |
H10 |
116.5 |
240.0 |
| C14 |
C19 |
H12 |
H13 |
121.2 |
240.0 |
| H12 |
C19 |
C13 |
C17 |
198.0 |
60.0 |
| C13 |
C19 |
H12 |
H13 |
238.8 |
120.0 |
| H12 |
C19 |
C13 |
H19 |
292.1 |
180.0 |
| C14 |
C19 |
H13 |
H12 |
238.8 |
120.0 |
| H13 |
C19 |
C13 |
C17 |
77.2 |
180.0 |
| C13 |
C19 |
H13 |
H12 |
121.2 |
240.0 |
| H13 |
C19 |
C13 |
H19 |
171.3 |
300.0 |
| H16 |
C14 |
C15 |
H6 |
162.7 |
300.0 |
| H16 |
C14 |
C15 |
H7 |
288.9 |
180.0 |
| H16 |
C14 |
C19 |
H12 |
78.0 |
180.0 |
| H16 |
C14 |
C19 |
H13 |
198.7 |
60.0 |
| H17 |
C14 |
C15 |
H6 |
287.0 |
60.0 |
| H17 |
C14 |
C15 |
H7 |
53.2 |
300.0 |
| H17 |
C14 |
C19 |
H12 |
313.8 |
60.0 |
| H17 |
C14 |
C19 |
H13 |
74.5 |
300.0 |
| C16 |
C17 |
H18 |
C13 |
227.6 |
240.0 |
| H18 |
C17 |
C16 |
H8 |
335.4 |
300.0 |
| H18 |
C17 |
C16 |
H9 |
219.5 |
180.0 |
| C16 |
C17 |
H18 |
H20 |
113.8 |
120.0 |
| H18 |
C17 |
C13 |
H19 |
158.4 |
180.0 |
| C13 |
C17 |
H18 |
H20 |
246.2 |
240.0 |
| C19 |
C13 |
H19 |
C17 |
244.5 |
240.0 |
| H19 |
C13 |
C19 |
H12 |
292.1 |
180.0 |
| H19 |
C13 |
C19 |
H13 |
171.3 |
300.0 |
| H19 |
C13 |
C17 |
H18 |
158.4 |
180.0 |
| H19 |
C13 |
C17 |
H20 |
42.2 |
60.0 |
| H19 |
C13 |
C18 |
H10 |
40.6 |
185.0 |
| H19 |
C13 |
C18 |
H11 |
158.4 |
65.0 |
| C16 |
C17 |
H20 |
C13 |
132.4 |
120.0 |
| H20 |
C17 |
C16 |
H8 |
91.6 |
60.0 |
| H20 |
C17 |
C16 |
H9 |
335.7 |
300.0 |
| C16 |
C17 |
H20 |
H18 |
246.2 |
240.0 |
| C13 |
C17 |
H20 |
H18 |
113.8 |
120.0 |
| H20 |
C17 |
C13 |
H19 |
42.2 |
60.0 |