Atom Nomenclature for JNK

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for JNK

Atom Name (V3) Atom Name (V2)
C1 C1
C2 C2
C3 C3
C4 C4
C5 C5
C6 C6
C7 C7
C8 C8
C9 C9
C10 C10
N11 N11
N12 N12
N13 N13
N14 N14
C15 C15
C16 C16
C17 C17
C18 C18
C19 C19
O20 O20
C21 C21
C22 C22
C23 C23
C24 C24
C25 C25
C26 C26
C27 C27
C28 C28
O29 O29
C30 C30
F31 F31
H3 H3
H4 H4
H5 H5
H6 H6
H8 H8
H10 H10
H11 H11
H13 H13
H17 H17
H18 H18
H19 H19
H21 H21
H22 H22
H231 1H23
H232 2H23
H241 1H24
H242 2H24
H261 1H26
H262 2H26
H271 1H27
H272 2H27
H28 H28
H301 1H30
H302 2H30
H303 3H30