PDB Chemical Component JNI

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for JNI

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C13	C14	1.388	1.382
C13	C12	1.391	1.383
C14	C15	1.390	1.383
C12	C11	1.391	1.381
C15	C10	1.391	1.383
C11	C10	1.391	1.383
C10	C9	1.509	1.507
N1	C2	1.377	1.384
N7	C2	1.324	1.325
N7	C6	1.331	1.329
C17	C18	1.382	1.381
C17	C16	1.393	1.388
C2	N3	1.329	1.325
C9	N8	1.475	1.465
C18	C19	1.392	1.384
N8	C6	1.374	1.387
N8	C16	1.398	1.396
C6	C5	1.397	1.397
N3	C4	1.335	1.325
C16	C21	1.416	1.400
C5	C4	1.385	1.381
C19	C20	1.381	1.380
C21	C20	1.401	1.392
C21	C22	1.477	1.483
C22	C23	1.395	1.395
C22	C27	1.394	1.392
C23	C24	1.383	1.381
C24	C25	1.380	1.381
C27	C26	1.390	1.391
C25	C26	1.390	1.394
C26	C28	1.471	1.485
C28	C29	1.396	1.397
C28	C33	1.401	1.397
C29	N30	1.332	1.321
C33	N32	1.323	1.322
N30	C31	1.341	1.325
N32	C31	1.334	1.325
C31	N34	1.401	1.383
C35	N34	1.488	1.470
C35	C36	1.537	1.531
N34	C39	1.486	1.469
C36	N37	1.476	1.470
C39	C38	1.532	1.530
N37	C38	1.470	1.469
C4	H1	1.080	1.080
C5	H2	1.080	1.080
C11	H3	1.080	1.080
C12	H4	1.080	1.080
C15	H5	1.080	1.079
C17	H6	1.080	1.080
C18	H7	1.080	1.080
C19	H8	1.080	1.080
C23	H9	1.080	1.079
C24	H10	1.080	1.080
C27	H11	1.080	1.081
C33	H12	1.080	1.080
C35	H13	1.100	1.089
C35	H14	1.100	1.091
C36	H15	1.100	1.090
C36	H16	1.099	1.090
C38	H17	1.100	1.090
C38	H18	1.100	1.090
C39	H19	1.100	1.089
C39	H20	1.100	1.091
N1	H21	1.000	0.970
N1	H22	1.000	0.970
C9	H23	1.100	1.090
C9	H24	1.100	1.090
C13	H25	1.080	1.080
C14	H26	1.080	1.080
C20	H27	1.080	1.080
C25	H28	1.080	1.079
C29	H29	1.080	1.080
N37	H30	1.000	1.009

Bond Angles for JNI

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C14	C13	H25	120.1	120.0
C13	C14	H26	120.0	120.0
C13	C12	H4	119.8	120.0
C14	C15	H5	119.8	120.0
C12	C11	C10	120.0	120.0
C12	C11	H3	120.0	120.1
C11	C10	C15	119.6	120.0
C15	C10	C9	120.3	120.0
C10	C15	H5	119.9	120.0
C11	C10	C9	120.1	120.0
C10	C11	H3	120.0	119.9
C10	C9	H23	108.9	109.5
C10	C9	H24	108.9	109.5
N1	C2	N3	120.0	119.2
C17	C18	C19	120.9	120.4
C18	C17	H6	120.0	120.0
C17	C18	H7	119.6	119.8
C17	C16	C21	119.3	119.7
C2	N3	C4	121.1	120.9
C18	C19	C20	120.2	120.2
C19	C18	H7	119.5	119.8
C18	C19	H8	119.9	119.9
C6	C5	H2	121.2	120.7
N3	C4	H1	120.3	120.3
C16	C21	C20	119.9	119.7
C16	C21	C22	123.3	120.1
C5	C4	H1	120.2	120.3
C19	C20	C21	119.8	120.0
C20	C19	H8	119.9	119.9
C19	C20	H27	120.1	120.0
C20	C21	C22	116.9	120.2
C21	C20	H27	120.1	120.0
C21	C22	C23	122.0	120.1
C21	C22	C27	118.3	120.1
C22	C23	H9	120.1	119.9
C22	C27	C26	119.9	119.7
C22	C27	H11	120.1	120.1
C23	C24	C25	120.5	120.3
C24	C23	H9	120.1	120.0
C23	C24	H10	119.7	119.9
C24	C25	C26	120.0	120.1
C25	C24	H10	119.7	119.9
C24	C25	H28	120.0	120.0
C27	C26	C25	120.0	119.9
C27	C26	C28	118.8	120.0
C26	C27	H11	120.1	120.1
C25	C26	C28	121.2	120.0
C26	C25	H28	120.0	119.9
C26	C28	C29	123.9	120.8
C28	C29	N30	118.4	119.0
C28	C29	H29	120.8	120.5
C28	C33	N32	119.4	119.0
C28	C33	H12	120.3	120.5
N30	C29	H29	120.8	120.5
N32	C33	H12	120.3	120.5
N30	C31	N34	121.6	119.1
N32	C31	N34	118.3	119.1
C31	N34	C35	116.1	111.0
C31	N34	C39	115.3	111.0
C36	C35	N34	113.6	109.4
C35	N34	C39	118.2	110.9
N34	C35	H13	108.4	109.5
N34	C35	H14	108.4	109.5
C35	C36	N37	112.4	109.3
C36	C35	H13	108.4	109.5
C36	C35	H14	108.4	109.5
C35	C36	H15	108.7	109.5
C35	C36	H16	108.7	109.5
N34	C39	H19	108.8	109.5
N34	C39	H20	108.9	109.5
C36	N37	C38	114.9	110.9
N37	C36	H15	108.7	109.5
N37	C36	H16	108.7	109.5
C36	N37	H30	108.1	111.0
C39	C38	H17	109.7	109.5
C39	C38	H18	109.7	109.5
N37	C38	H17	109.6	109.5
N37	C38	H18	109.7	109.5
H13	C35	H14	109.4	109.5
H15	C36	H16	109.5	109.6
H17	C38	H18	109.5	109.5
H19	C39	H20	109.5	109.5
H21	N1	H22	109.5	120.0
H23	C9	H24	109.5	109.5

Torsion Angles for JNI

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C14	C13	C12	H4	180.1	180.0
C13	C14	C15	H5	179.9	180.0
C13	C12	C11	H3	179.8	179.8
C10	C15	C14	H5	180.0	179.4
C12	C11	C10	C15	0.1	359.7
C12	C11	C10	C9	180.2	179.7
C10	C11	C12	H3	180.0	180.3
C14	C15	C10	H5	180.0	180.6
C11	C10	C15	C9	180.1	180.0
C15	C10	C11	H3	180.1	180.0
C15	C10	C9	H23	52.1	145.3
C15	C10	C9	H24	171.5	25.3
C12	C11	C10	H3	180.0	179.7
C15	C10	C11	C9	179.9	180.0
C11	C10	C15	H5	180.0	180.0
C11	C10	C9	H23	232.0	325.3
C11	C10	C9	H24	351.4	205.3
C11	C10	C9	C15	179.9	180.0
C9	C10	C15	H5	359.9	360.0
C9	C10	C11	H3	0.2	360.0
H23	C9	C10	H24	240.6	120.0
N1	C2	N3	C4	179.8	179.9
N7	C6	C5	H2	180.8	180.3
C18	C17	C16	C21	0.2	0.0
C17	C18	C19	C20	360.0	359.9
C19	C18	C17	H7	180.0	180.0
C17	C18	C19	H8	180.0	180.0
C17	C16	C21	C20	359.8	360.0
C17	C16	C21	C22	180.5	180.0
C2	N3	C4	H1	179.9	180.0
C15	C10	C9	N8	291.8	265.3
C11	C10	C9	N8	111.7	85.4
C19	C18	C17	H6	180.0	180.1
C17	C18	C19	H7	180.0	180.0
C18	C19	C20	C21	360.0	0.1
C20	C19	C18	H8	180.0	179.9
C18	C19	C20	H27	180.0	180.0
N8	C6	C5	H2	359.2	359.5
N8	C16	C21	C20	181.4	180.2
N8	C16	C21	C22	2.2	0.3
C6	C5	C4	H1	179.8	179.5
C5	C4	N3	H1	180.0	180.0
C19	C20	C21	C16	0.2	359.9
C20	C21	C16	C22	179.3	180.0
C16	C21	C20	H27	180.1	180.1
C16	C21	C22	C23	300.1	303.7
C16	C21	C22	C27	121.1	123.7
C2	N3	C4	C5	359.9	360.0
N3	C4	C5	H1	180.0	180.0
C20	C19	C18	H7	180.0	179.9
C18	C19	C20	H8	180.0	180.1
C16	C21	C20	C19	0.2	359.9
C19	C20	C21	C22	179.5	179.9
C21	C20	C19	H27	180.0	180.1
C16	C21	C20	C22	180.7	180.0
C21	C20	C19	H8	180.0	180.0
C19	C20	C21	H27	180.0	179.9
C20	C21	C22	C23	120.8	123.7
C20	C21	C22	C27	301.8	303.7
C16	C21	C22	C20	179.3	180.0
C22	C21	C20	H27	359.5	0.1
C21	C22	C23	H9	0.7	0.3
C21	C22	C27	C26	180.0	179.5
C21	C22	C27	H11	359.9	0.3
C21	C22	C23	C27	181.0	180.0
C22	C23	C24	C25	0.1	0.3
C24	C23	C22	H9	180.0	179.7
C22	C23	C24	H10	180.1	180.3
C21	C22	C27	C23	179.0	180.0
C27	C22	C23	H9	179.7	180.3
C22	C27	C26	C25	358.7	0.8
C22	C27	C26	C28	181.6	180.0
C26	C27	C22	H11	180.0	179.2
C21	C22	C23	C24	180.7	180.0
C22	C23	C24	H9	180.0	180.3
C23	C24	C25	C26	359.5	359.9
C25	C24	C23	H10	180.0	179.9
C23	C24	C25	H28	179.5	180.0
C25	C24	C23	H9	180.1	180.0
C23	C24	C25	H10	180.0	180.1
C27	C26	C25	C24	1.1	359.6
C24	C25	C26	C28	178.1	180.3
C26	C25	C24	H28	180.0	179.9
C22	C27	C26	H11	180.0	180.8
C24	C25	C26	C27	1.1	359.6
C25	C26	C27	C28	177.0	180.8
C27	C26	C25	H28	181.1	179.5
C27	C26	C28	C29	277.4	180.0
C26	C25	C24	H10	179.5	179.9
C24	C25	C26	H28	180.0	180.1
C27	C26	C25	C28	183.0	179.2
C25	C26	C27	H11	178.7	180.0
C25	C26	C28	C29	100.4	359.2
C27	C26	C28	C25	177.0	180.8
C28	C26	C27	H11	1.7	359.2
C28	C26	C25	H28	358.1	0.2
C26	C28	C29	N30	179.6	180.0
C26	C28	C29	H29	359.6	360.0
C26	C28	C33	N32	181.0	180.0
C26	C28	C33	H12	1.0	359.9
C29	C28	C33	N32	359.5	0.4
C29	C28	C33	H12	179.5	180.2
N30	C29	C28	H29	180.0	180.0
C27	C26	C28	C33	95.8	0.3
N32	C33	C28	H12	180.0	180.2
C28	C29	N30	H29	180.0	180.0
C29	N30	C31	N34	181.1	180.0
C28	C33	N32	H12	180.0	179.8
C33	N32	C31	N34	179.7	180.0
N32	C31	N30	N34	179.2	180.3
N30	C31	N34	C35	8.8	180.0
N30	C31	N34	C39	224.4	56.2
N30	C31	N32	N34	180.8	179.7
N32	C31	N34	C35	189.6	359.8
N32	C31	N34	C39	45.2	235.9
C36	C35	N34	C31	171.7	176.8
C35	N34	C31	C39	144.4	123.8
C31	N34	C35	H13	292.3	56.8
C31	N34	C35	H14	51.1	296.7
C31	N34	C39	H19	273.3	63.2
C31	N34	C39	H20	32.6	303.2
C31	N34	C35	C39	216.7	236.1
N34	C35	C36	N37	24.5	58.4
C36	C35	N34	H13	239.4	120.0
C36	C35	N34	H14	120.6	240.1
N34	C35	C36	H15	145.0	178.3
N34	C35	C36	H16	264.1	298.4
C35	N34	C39	H19	129.7	299.3
C35	N34	C39	H20	249.0	179.3
H13	C35	N34	H14	241.3	120.1
C31	N34	C35	C36	171.7	176.8
C36	C35	N34	C39	315.0	300.7
N34	C35	C36	H13	120.6	240.0
N34	C35	C36	H14	239.4	119.9
C35	C36	N37	C38	29.6	300.7
N37	C36	C35	H15	239.5	240.1
N37	C36	C35	H16	120.4	120.0
C35	C36	N37	H30	150.4	64.5
H13	C35	C36	H14	118.7	239.9
H15	C36	C35	H16	240.9	239.9
C31	N34	C39	C35	143.6	123.9
C39	N34	C35	H13	75.7	180.7
C39	N34	C35	H14	194.4	60.6
N34	C39	C38	H17	163.4	61.6
N34	C39	C38	H18	283.6	181.6
H19	C39	N34	H20	240.7	120.0
N37	C36	C35	N34	24.5	58.4
N37	C36	C35	H13	263.9	178.4
N37	C36	C35	H14	145.2	298.5
C35	C36	N37	H15	120.4	119.9
C35	C36	N37	H16	239.6	240.1
C36	N37	C38	H17	174.6	299.4
C36	N37	C38	H18	54.3	179.3
H15	C36	N37	H16	119.1	120.1
C31	N34	C39	C38	153.0	183.2
C35	N34	C39	C38	9.4	59.3
C36	N37	C38	C39	294.4	59.3
N37	C38	C39	H17	240.2	240.0
N37	C38	C39	H18	119.9	120.0
H17	C38	C39	H18	239.7	240.0
C38	N37	C36	H15	269.2	180.8
C38	N37	C36	H16	150.1	60.6
C36	N37	C38	H30	120.8	123.8
C39	C38	N37	H17	119.9	120.0
C39	C38	N37	H18	240.1	240.0
H17	C38	N37	H18	120.2	120.0
H2	C5	C4	H1	359.9	359.9
C12	C11	H3	C10	180.0	180.3
H3	C11	C10	C15	180.1	180.0
H3	C11	C10	C9	0.2	360.0
H4	C12	C11	C10	179.8	180.0
H4	C12	C11	H3	359.8	359.7
H5	C15	C10	C9	359.9	360.0
H6	C17	C18	C19	180.0	180.1
H6	C17	C18	H7	359.9	0.1
H6	C17	C16	C21	180.2	180.0
C17	C18	H7	C19	180.0	180.0
H7	C18	C17	H6	359.9	0.1
H7	C18	C19	C20	180.0	179.9
H7	C18	C19	H8	360.0	0.1
C18	C19	H8	C20	180.0	179.9
H8	C19	C18	H7	360.0	0.1
H8	C19	C20	C21	180.0	180.0
H8	C19	C20	H27	0.0	359.9
H9	C23	C24	C25	180.1	180.0
H9	C23	C24	H10	0.1	0.0
C23	C24	H10	C25	180.0	179.9
H10	C24	C23	H9	0.1	0.0
H10	C24	C25	C26	179.5	179.9
H10	C24	C25	H28	359.5	360.0
C22	C27	H11	C26	180.0	179.2
H11	C27	C26	C25	178.7	180.0
H11	C27	C26	C28	1.7	359.2
C28	C33	H12	N32	180.0	180.2
C36	C35	H13	N34	123.8	240.1
H13	C35	N34	C39	75.7	180.7
N34	C35	H13	H14	118.1	239.9
H13	C35	C36	N37	263.9	178.4
C36	C35	H13	H14	241.9	120.0
H13	C35	C36	H15	24.4	298.3
H13	C35	C36	H16	143.5	58.4
C36	C35	H14	N34	236.2	119.9
H14	C35	N34	C39	194.4	60.6
N34	C35	H14	H13	241.9	120.1
H14	C35	C36	N37	145.2	298.5
C36	C35	H14	H13	118.1	240.0
H14	C35	C36	H15	265.6	58.4
H14	C35	C36	H16	24.7	178.5
H15	C36	C35	N34	145.0	178.3
C35	C36	H15	N37	237.3	240.2
H15	C36	C35	H13	24.4	298.3
H15	C36	C35	H14	265.6	58.4
C35	C36	H15	H16	118.6	120.1
H15	C36	N37	C38	269.2	180.8
N37	C36	H15	H16	241.4	239.9
H15	C36	N37	H30	30.0	304.6
H16	C36	C35	N34	264.1	298.4
C35	C36	H16	N37	122.7	119.9
H16	C36	C35	H13	143.5	58.4
H16	C36	C35	H14	24.7	178.5
C35	C36	H16	H15	241.4	239.9
H16	C36	N37	C38	150.1	60.6
N37	C36	H16	H15	118.7	120.1
H16	C36	N37	H30	270.9	184.5
C39	C38	H17	H18	120.4	120.0
N37	C38	H17	H18	239.6	239.9
C39	C38	H18	H17	239.6	240.0
N37	C38	H18	H17	120.3	120.1
N34	C39	H19	H20	118.9	240.0
H19	C39	C38	H17	43.0	181.5
H19	C39	C38	H18	163.2	301.6
N34	C39	H20	H19	241.1	120.0
H20	C39	C38	H17	283.8	301.6
H20	C39	C38	H18	44.0	61.6
H21	N1	C2	N3	180.0	0.1
H22	N1	C2	N3	300.0	179.9
C10	C9	H23	H24	119.0	240.0
C10	C9	H24	H23	241.0	120.0
H25	C13	C14	H26	0.1	359.7
H25	C13	C12	H4	0.1	0.4
H26	C14	C13	H25	0.1	359.7
H26	C14	C15	H5	359.9	0.3
C19	C20	H27	C21	180.0	180.1
H27	C20	C19	H8	0.0	359.9
H27	C20	C21	C22	359.5	0.1
C24	C25	H28	C26	180.0	179.9
H28	C25	C24	H10	359.5	360.0
H28	C25	C26	C28	358.1	0.2
C28	C29	H29	N30	180.0	180.1
C36	N37	H30	C38	235.0	236.2
H30	N37	C36	H15	30.0	304.6
H30	N37	C36	H16	270.9	184.5
H30	N37	C38	H17	53.8	175.5
H30	N37	C38	H18	293.5	55.5