PDB Chemical Component JNH

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for JNH

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
N1	C1	1.451	1.470
N1	C4	1.424	1.477
N1	C5	1.327	1.348
C1	C2	1.513	1.544
C1	C20	1.501	1.529
C1	H1	1.115	1.090
C2	C3	1.512	1.551
C2	H21	1.115	1.090
C2	H22	1.114	1.090
C3	C4	1.505	1.549
C3	H31	1.115	1.090
C3	H32	1.115	1.090
C4	H41	1.116	1.090
C4	H42	1.116	1.090
C5	C6	1.518	1.507
C5	O1	1.228	1.213
C6	N2	1.468	1.469
C6	C7	1.536	1.530
C6	H6	1.115	1.090
N2	HN21	1.021	1.009
N2	HN22	1.020	1.010
C7	C11	1.519	1.507
C7	H71	1.114	1.090
C7	H72	1.115	1.090
C8	C9	1.409	1.394
C8	C13	1.418	1.394
C8	C17	1.427	1.484
C9	C10	1.408	1.380
C9	H9	1.103	1.080
C10	C11	1.420	1.384
C10	H10	1.103	1.080
C11	C12	1.397	1.383
C12	C13	1.400	1.380
C12	H12	1.102	1.080
C13	H13	1.103	1.080
C14	C15	1.418	1.383
C14	C19	1.413	1.384
C14	H14	1.104	1.081
C15	C16	1.427	1.380
C15	H15	1.104	1.080
C16	C17	1.434	1.393
C16	H16	1.103	1.080
C17	C18	1.439	1.393
C18	C19	1.418	1.380
C18	H18	1.102	1.080
C19	H19	1.103	1.081
C20	N3	1.291	1.469
C20	H201	1.115	1.090
C20	H202	1.115	1.090
N3	HN31	1.019	1.009
N3	HN32	1.021	1.009

Bond Angles for JNH

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C1	N1	C4	112.4	108.6
C1	N1	C5	121.4	125.8
N1	C1	C2	100.7	107.4
N1	C1	C20	123.3	109.9
N1	C1	H1	106.4	109.8
C4	N1	C5	123.4	125.6
N1	C4	C3	102.2	104.8
N1	C4	H41	115.0	110.5
N1	C4	H42	115.0	110.3
N1	C5	C6	111.8	120.0
N1	C5	O1	123.6	120.0
C2	C1	C20	109.1	109.9
C2	C1	H1	121.4	109.9
C1	C2	C3	101.3	103.0
C1	C2	H21	115.3	110.7
C1	C2	H22	115.4	110.7
C20	C1	H1	97.6	109.9
C1	C20	N3	131.3	109.5
C1	C20	H201	104.6	109.5
C1	C20	H202	104.6	109.5
C3	C2	H21	115.3	110.8
C3	C2	H22	115.3	110.7
C2	C3	C4	99.5	101.6
C2	C3	H31	116.1	111.0
C2	C3	H32	116.1	111.0
H21	C2	H22	95.2	110.8
C4	C3	H31	116.0	111.0
C4	C3	H32	116.0	111.0
C3	C4	H41	115.0	110.4
C3	C4	H42	115.0	110.4
H31	C3	H32	94.4	110.9
H41	C4	H42	95.4	110.4
C6	C5	O1	124.6	120.0
C5	C6	N2	110.3	109.5
C5	C6	C7	103.1	109.5
C5	C6	H6	114.1	109.5
N2	C6	C7	112.2	109.5
N2	C6	H6	105.2	109.4
C6	N2	HN21	110.3	106.7
C6	N2	HN22	111.9	106.7
C7	C6	H6	112.2	109.5
C6	C7	C11	116.7	109.5
C6	C7	H71	109.6	109.5
C6	C7	H72	109.6	109.5
HN21	N2	HN22	111.9	106.7
C11	C7	H71	109.6	109.5
C11	C7	H72	109.6	109.5
C7	C11	C10	120.7	119.9
C7	C11	C12	117.7	119.9
H71	C7	H72	100.6	109.5
C9	C8	C13	117.7	119.7
C9	C8	C17	121.9	120.1
C8	C9	C10	120.8	119.9
C8	C9	H9	119.7	120.0
C13	C8	C17	120.4	120.1
C8	C13	C12	123.0	119.9
C8	C13	H13	119.1	120.1
C8	C17	C16	121.8	120.1
C8	C17	C18	121.3	120.1
C10	C9	H9	119.6	120.0
C9	C10	C11	119.2	120.1
C9	C10	H10	119.9	120.0
C11	C10	H10	120.8	119.9
C10	C11	C12	121.5	120.2
C11	C12	C13	117.7	120.2
C11	C12	H12	121.1	119.9
C13	C12	H12	121.2	119.9
C12	C13	H13	117.8	120.1
C15	C14	C19	120.9	120.2
C15	C14	H14	119.7	119.9
C14	C15	C16	119.5	120.1
C14	C15	H15	119.9	119.9
C19	C14	H14	119.4	119.9
C14	C19	C18	119.1	120.1
C14	C19	H19	120.3	119.9
C16	C15	H15	120.6	119.9
C15	C16	C17	121.4	119.9
C15	C16	H16	119.0	120.0
C17	C16	H16	119.6	120.1
C16	C17	C18	116.9	119.8
C17	C18	C19	122.2	119.9
C17	C18	H18	119.7	120.1
C19	C18	H18	118.1	120.0
C18	C19	H19	120.6	120.0
N3	C20	H201	104.6	109.5
N3	C20	H202	104.7	109.4
C20	N3	HN31	131.3	106.7
C20	N3	HN32	104.6	106.7
H201	C20	H202	104.4	109.5
HN31	N3	HN32	104.6	106.7

Torsion Angles for JNH

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C4	N1	C1	C5	198.1	179.9
C1	N1	C4	C3	17.7	24.3
C1	N1	C4	H41	143.0	265.4
C1	N1	C4	H42	252.3	143.1
C1	N1	C5	C6	172.7	179.8
C1	N1	C5	O1	353.4	359.9
C2	C1	N1	C20	238.4	240.5
C2	C1	N1	H1	127.4	119.5
N1	C1	C2	C3	322.5	337.9
N1	C1	C2	H21	87.7	96.3
N1	C1	C2	H22	197.2	219.6
C20	C1	N1	H1	249.0	239.0
N1	C1	C20	N3	13.8	55.3
N1	C1	C20	H201	139.0	295.3
N1	C1	C20	H202	248.5	175.3
C1	N1	C4	C5	161.5	180.1
C4	N1	C1	C2	12.6	358.8
C4	N1	C1	C20	134.2	118.3
C4	N1	C1	H1	245.2	239.3
C4	N1	C5	C6	332.6	360.0
C4	N1	C5	O1	153.3	180.0
C2	C3	C4	N1	319.8	322.9
N1	C4	C3	H31	194.5	204.8
N1	C4	C3	H32	85.1	81.0
C3	C4	N1	H41	234.7	118.9
C3	C4	N1	H42	125.3	241.2
H41	C4	N1	H42	250.6	122.3
C1	N1	C5	C4	200.1	179.8
C5	N1	C1	C2	174.5	178.9
C5	N1	C1	C20	296.1	298.4
C5	N1	C1	H1	47.1	59.5
C5	N1	C4	C3	216.1	204.2
C5	N1	C4	H41	341.4	85.3
C5	N1	C4	H42	90.8	323.0
C6	C5	N1	O1	179.3	179.9
N1	C5	C6	N2	130.8	160.0
N1	C5	C6	C7	250.8	280.0
N1	C5	C6	H6	12.7	40.1
C2	C1	N1	C4	12.6	358.8
C2	C1	N1	C5	174.5	178.9
N1	C1	C2	C20	131.1	119.5
N1	C1	C2	H1	243.1	240.6
C20	C1	C2	H1	112.0	121.0
C2	C1	C20	N3	131.4	173.3
C2	C1	C20	H201	256.6	53.3
C2	C1	C20	H202	6.2	293.3
C3	C2	C1	H21	234.8	241.6
C3	C2	C1	H22	125.3	118.3
C1	C2	C3	C4	48.5	35.5
C1	C2	C3	H31	173.7	153.6
C1	C2	C3	H32	283.3	277.4
H21	C2	C1	H22	250.5	236.7
C20	C1	N1	C4	134.2	118.3
C20	C1	N1	C5	296.1	298.4
N1	C1	C20	C2	242.4	242.1
N1	C1	C20	H1	115.4	121.0
C2	C1	C20	H1	233.0	239.0
C20	C1	C2	C3	191.4	218.4
C20	C1	C2	H21	316.6	336.8
C20	C1	C2	H22	66.1	100.1
N3	C20	C1	H201	234.8	120.0
N3	C20	C1	H202	125.3	240.0
C1	C20	N3	HN31	180.0	66.2
C1	C20	N3	HN32	54.7	180.0
H201	C20	C1	H202	250.5	120.0
H1	C1	N1	C4	245.2	239.3
H1	C1	N1	C5	47.1	59.5
N1	C1	H1	C2	114.0	117.9
N1	C1	H1	C20	231.9	238.9
C2	C1	H1	C20	117.9	121.0
H1	C1	C2	C3	79.4	97.3
H1	C1	C2	H21	204.6	215.7
H1	C1	C2	H22	314.1	339.0
H1	C1	C20	N3	258.4	294.3
H1	C1	C20	H201	23.6	174.3
H1	C1	C20	H202	133.2	54.3
N1	C4	C3	C2	319.8	322.9
C3	C2	C1	C20	191.4	218.4
C3	C2	C1	H1	79.4	97.3
C1	C2	C3	H21	125.2	118.4
C1	C2	C3	H22	234.7	241.7
H21	C2	C3	H22	109.5	123.3
C4	C3	C2	H31	234.7	242.0
C4	C3	C2	H32	125.2	118.1
C2	C3	C4	H41	194.5	81.8
C2	C3	C4	H42	85.1	204.1
H31	C3	C2	H32	250.5	236.1
H21	C2	C1	C20	316.6	336.8
H21	C2	C1	H1	204.6	215.7
C1	C2	H21	C3	242.4	246.4
C1	C2	H21	H22	121.2	123.2
C3	C2	H21	H22	238.8	236.8
H21	C2	C3	C4	283.3	277.1
H21	C2	C3	H31	48.5	35.2
H21	C2	C3	H32	158.0	159.0
H22	C2	C1	C20	66.1	100.1
H22	C2	C1	H1	314.1	339.0
C1	C2	H22	C3	117.6	113.5
C1	C2	H22	H21	238.8	236.7
C3	C2	H22	H21	121.2	123.3
H22	C2	C3	C4	173.8	153.8
H22	C2	C3	H31	299.0	271.9
H22	C2	C3	H32	48.5	35.7
C3	C4	N1	C5	216.1	204.2
N1	C4	C3	H41	125.3	241.0
N1	C4	C3	H42	234.7	118.8
C4	C3	C2	H21	283.3	277.1
C4	C3	C2	H22	173.8	153.8
C2	C3	C4	H31	125.3	118.0
C2	C3	C4	H32	234.7	241.9
H31	C3	C4	H32	109.4	123.9
H41	C4	C3	H42	109.4	237.7
H31	C3	C2	H21	48.5	35.2
H31	C3	C2	H22	299.0	271.9
C2	C3	H31	C4	243.7	247.8
C2	C3	H31	H32	121.9	123.9
C4	C3	H31	H32	238.2	236.1
H31	C3	C4	H41	69.2	323.8
H31	C3	C4	H42	319.8	86.1
H32	C3	C2	H21	158.0	159.0
H32	C3	C2	H22	48.5	35.7
C2	C3	H32	C4	116.3	112.2
C2	C3	H32	H31	238.1	236.1
C4	C3	H32	H31	121.8	123.9
H32	C3	C4	H41	319.8	200.0
H32	C3	C4	H42	210.4	322.2
H41	C4	N1	C5	341.4	85.3
N1	C4	H41	C3	241.7	115.5
N1	C4	H41	H42	120.8	237.7
H41	C4	C3	H31	69.2	323.8
H41	C4	C3	H32	319.8	200.0
C3	C4	H41	H42	239.1	122.3
H42	C4	N1	C5	90.8	323.0
N1	C4	H42	C3	118.3	244.6
N1	C4	H42	H41	239.2	122.4
H42	C4	C3	H31	319.8	86.1
H42	C4	C3	H32	210.4	322.2
C3	C4	H42	H41	120.8	237.7
N1	C5	C6	O1	180.7	180.1
N2	C6	C5	C7	240.0	239.9
N2	C6	C5	H6	118.1	119.9
C5	C6	N2	HN21	180.0	60.1
C5	C6	N2	HN22	54.7	173.8
C7	C6	C5	H6	238.1	240.0
C5	C6	C7	C11	186.6	175.0
C5	C6	C7	H71	311.9	295.0
C5	C6	C7	H72	61.4	55.0
N1	C5	O1	C6	179.2	179.9
O1	C5	C6	N2	310.1	339.9
O1	C5	C6	C7	70.2	99.9
O1	C5	C6	H6	192.0	220.0
N2	C6	C5	O1	310.1	339.9
C5	C6	N2	C7	114.4	120.1
C5	C6	N2	H6	236.6	240.0
C7	C6	N2	H6	122.2	120.0
N2	C6	C7	C11	305.4	295.0
N2	C6	C7	H71	70.6	55.0
N2	C6	C7	H72	180.1	175.0
HN21	N2	C6	HN22	125.3	246.3
C7	C6	C5	O1	70.2	99.9
C5	C6	C7	N2	241.3	240.0
C5	C6	C7	H6	123.1	120.0
N2	C6	C7	H6	241.9	240.1
C7	C6	N2	HN21	65.6	300.0
C7	C6	N2	HN22	300.4	53.7
C11	C7	C6	H71	234.8	240.0
C11	C7	C6	H72	125.2	120.0
C6	C7	C11	C10	72.6	269.7
C6	C7	C11	C12	250.8	90.0
H71	C7	C6	H72	250.4	240.0
H6	C6	C5	O1	192.0	220.0
C5	C6	H6	N2	121.0	119.9
C5	C6	H6	C7	243.3	240.0
N2	C6	H6	C7	122.3	120.0
H6	C6	N2	HN21	303.4	180.0
H6	C6	N2	HN22	178.1	293.7
H6	C6	C7	C11	63.5	55.0
H6	C6	C7	H71	188.7	175.0
H6	C6	C7	H72	298.3	295.0
HN21	N2	C6	C7	65.6	300.0
HN21	N2	C6	H6	303.4	180.0
C6	N2	HN21	HN22	234.7	113.8
HN22	N2	C6	C7	300.4	53.7
HN22	N2	C6	H6	178.1	293.7
C6	N2	HN22	HN21	124.4	246.3
C11	C7	C6	H6	63.5	55.0
C6	C7	C11	H71	125.2	120.0
C6	C7	C11	H72	234.8	240.0
H71	C7	C11	H72	109.5	120.0
C9	C10	C11	C7	179.5	179.8
C7	C11	C10	H10	359.5	0.4
C10	C11	C7	C12	181.8	179.7
C7	C11	C12	C13	180.6	180.0
C7	C11	C12	H12	0.6	360.0
H71	C7	C6	H6	188.7	175.0
C6	C7	H71	C11	230.8	240.0
C6	C7	H71	H72	115.4	120.0
C11	C7	H71	H72	244.6	240.0
H71	C7	C11	C10	307.4	149.7
H71	C7	C11	C12	125.5	330.0
H72	C7	C6	H6	298.3	295.0
C6	C7	H72	C11	129.2	120.0
C6	C7	H72	H71	244.6	240.0
C11	C7	H72	H71	115.4	120.0
H72	C7	C11	C10	197.9	29.7
H72	C7	C11	C12	16.0	210.0
C13	C8	C9	C17	179.9	179.9
C9	C8	C13	C12	359.8	0.0
C9	C8	C13	H13	179.8	180.0
C9	C8	C17	C16	350.9	140.0
C9	C8	C17	C18	170.9	320.1
C10	C9	C8	H9	180.0	179.7
C8	C9	C10	C11	359.1	0.6
C8	C9	C10	H10	179.1	180.0
C9	C8	C13	C17	180.1	180.1
C13	C8	C9	C10	0.3	359.7
C13	C8	C9	H9	180.3	179.9
C13	C8	C17	C16	170.9	320.1
C13	C8	C17	C18	350.9	140.3
C11	C12	C13	C8	0.7	360.0
C8	C13	C12	H12	180.6	180.0
C12	C13	C8	H13	180.0	180.0
C9	C8	C17	C13	179.9	179.9
C17	C8	C9	C10	180.3	179.8
C17	C8	C9	H9	0.4	0.1
C17	C8	C13	C12	179.8	179.9
C17	C8	C13	H13	359.8	359.9
C15	C16	C17	C8	180.7	179.6
C8	C17	C16	H16	0.7	0.2
C16	C17	C8	C18	180.0	179.8
C8	C17	C18	C19	179.2	180.0
C8	C17	C18	H18	359.2	0.1
C7	C11	C10	C9	179.5	179.8
C10	C9	C8	C13	0.3	359.7
C10	C9	C8	C17	180.3	179.8
C8	C9	C10	H9	180.0	180.3
C11	C10	C9	H10	180.0	180.6
C9	C10	C11	C12	1.4	359.4
H9	C9	C8	C13	180.3	179.9
H9	C9	C8	C17	0.4	0.1
C8	C9	H9	C10	180.0	179.7
H9	C9	C10	C11	179.1	180.3
H9	C9	C10	H10	359.1	359.7
C10	C11	C7	H71	307.4	149.7
C10	C11	C7	H72	197.9	29.7
C7	C11	C10	C12	178.1	180.3
C11	C10	C9	H9	179.1	180.3
C9	C10	C11	H10	180.0	179.4
C10	C11	C12	C13	358.7	0.3
C10	C11	C12	H12	178.7	180.3
H10	C10	C9	H9	359.1	359.7
C9	C10	H10	C11	180.0	180.6
H10	C10	C11	C12	181.4	180.1
C12	C11	C7	H71	125.5	330.0
C12	C11	C7	H72	16.0	210.0
C7	C11	C12	C10	181.9	179.7
C8	C13	C12	C11	0.7	360.0
C12	C11	C10	H10	181.4	180.1
C13	C12	C11	H12	180.0	180.0
C11	C12	C13	H13	180.7	180.0
C12	C13	C8	C17	179.8	179.9
C8	C13	C12	H13	180.0	180.0
C11	C12	C13	H12	180.0	180.0
C11	C12	H12	C13	180.0	180.0
H12	C12	C13	H13	0.7	360.0
H13	C13	C8	C17	359.8	359.9
C8	C13	H13	C12	180.0	180.0
H13	C13	C12	H12	0.7	360.0
C19	C14	C15	H14	180.0	179.9
C15	C14	C19	C18	0.5	0.0
C15	C14	C19	H19	180.5	180.1
C16	C15	C14	H15	180.0	179.6
C14	C15	C16	C17	359.9	0.7
C14	C15	C16	H16	179.9	180.0
C15	C14	C19	H14	180.0	180.1
C19	C14	C15	C16	359.5	359.6
C19	C14	C15	H15	179.5	180.0
C17	C18	C19	C14	0.2	0.1
C14	C19	C18	H18	180.2	180.0
C18	C19	C14	H19	180.0	179.9
C15	C14	H14	C19	180.0	179.9
H14	C14	C15	C16	179.5	179.7
H14	C14	C15	H15	359.5	0.0
H14	C14	C19	C18	180.5	179.9
H14	C14	C19	H19	0.5	0.0
C8	C17	C16	C15	180.7	179.6
C16	C15	C14	C19	359.5	359.6
C16	C15	C14	H14	179.5	179.7
C14	C15	C16	H15	180.0	180.4
C17	C16	C15	H16	180.0	180.6
C15	C16	C17	C18	0.8	359.4
H15	C15	C14	C19	179.5	180.0
H15	C15	C14	H14	359.5	0.0
C14	C15	H15	C16	180.0	179.6
H15	C15	C16	C17	179.8	180.3
H15	C15	C16	H16	359.9	359.7
C8	C17	C16	C18	180.0	180.2
C17	C16	C15	H15	179.8	180.3
C15	C16	C17	H16	180.0	179.4
C16	C17	C18	C19	359.2	0.2
C16	C17	C18	H18	179.2	180.3
H16	C16	C15	H15	359.9	359.7
C15	C16	H16	C17	180.0	180.6
H16	C16	C17	C18	180.7	180.1
C8	C17	C18	C16	180.0	179.8
C14	C19	C18	C17	0.2	0.1
C18	C17	C16	H16	180.7	180.1
C19	C18	C17	H18	180.0	179.9
C17	C18	C19	H19	180.2	180.0
C18	C19	C14	H14	180.5	179.9
C14	C19	C18	H19	180.0	180.1
C17	C18	C19	H18	180.0	180.1
C17	C18	H18	C19	180.0	179.9
H18	C18	C19	H19	0.2	359.9
H19	C19	C14	H14	0.5	0.0
C14	C19	H19	C18	180.0	179.9
H19	C19	C18	H18	0.2	359.9
N3	C20	C1	H1	258.4	294.3
C1	C20	N3	H201	125.2	240.0
C1	C20	N3	H202	234.8	120.0
H201	C20	N3	H202	109.5	240.0
HN31	N3	C20	HN32	125.2	246.2
H201	C20	C1	H1	23.6	174.3
C1	C20	H201	N3	219.4	120.0
C1	C20	H201	H202	109.7	240.0
N3	C20	H201	H202	250.3	120.0
H201	C20	N3	HN31	54.7	186.2
H201	C20	N3	HN32	289.5	300.0
H202	C20	C1	H1	133.2	54.3
C1	C20	H202	N3	140.6	240.0
C1	C20	H202	H201	250.3	120.0
N3	C20	H202	H201	109.7	240.0
H202	C20	N3	HN31	305.2	306.2
H202	C20	N3	HN32	180.0	60.0
HN31	N3	C20	H201	54.7	186.2
HN31	N3	C20	H202	305.2	306.2
C20	N3	HN31	HN32	234.7	113.8
HN32	N3	C20	H201	289.5	300.0
HN32	N3	C20	H202	180.0	60.0
C20	N3	HN32	HN31	140.6	246.2