PDB Chemical Component JNA
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for JNA
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C08 |
C07 |
1.423 |
1.384 |
| C08 |
C09 |
1.405 |
1.334 |
| C07 |
C06 |
1.379 |
1.334 |
| C09 |
S10 |
1.667 |
1.759 |
| C06 |
S10 |
1.683 |
1.759 |
| C06 |
C05 |
1.467 |
1.507 |
| C05 |
N04 |
1.481 |
1.465 |
| O03 |
S02 |
1.412 |
1.421 |
| N04 |
S02 |
1.635 |
1.656 |
| S02 |
O01 |
1.409 |
1.420 |
| S02 |
C11 |
1.719 |
1.762 |
| C16 |
C11 |
1.390 |
1.381 |
| C16 |
C15 |
1.407 |
1.383 |
| C11 |
C12 |
1.386 |
1.382 |
| C15 |
C14 |
1.418 |
1.382 |
| C12 |
C13 |
1.408 |
1.382 |
| C14 |
C13 |
1.388 |
1.382 |
| C13 |
H131 |
1.080 |
1.080 |
| C15 |
H151 |
1.080 |
1.080 |
| N04 |
H041 |
1.000 |
0.970 |
| C05 |
H052 |
1.100 |
1.090 |
| C05 |
H051 |
1.100 |
1.089 |
| C07 |
H071 |
1.080 |
1.080 |
| C08 |
H081 |
1.080 |
1.080 |
| C09 |
H091 |
1.080 |
1.080 |
| C12 |
H121 |
1.080 |
1.080 |
| C14 |
H141 |
1.080 |
1.080 |
| C16 |
H161 |
1.080 |
1.080 |
Bond Angles for JNA
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C08 |
C07 |
H071 |
122.8 |
122.5 |
| C08 |
C09 |
S10 |
107.5 |
109.6 |
| C09 |
C08 |
H081 |
123.6 |
122.5 |
| C08 |
C09 |
H091 |
126.3 |
125.2 |
| C07 |
C06 |
S10 |
107.2 |
109.6 |
| C06 |
S10 |
C09 |
98.3 |
91.0 |
| S10 |
C09 |
H091 |
126.3 |
125.2 |
| C06 |
C05 |
H052 |
108.3 |
109.4 |
| C06 |
C05 |
H051 |
108.3 |
109.4 |
| C05 |
N04 |
H041 |
105.2 |
120.0 |
| O03 |
S02 |
C11 |
113.8 |
106.4 |
| N04 |
S02 |
C11 |
107.3 |
107.2 |
| S02 |
C11 |
C12 |
123.2 |
119.9 |
| C16 |
C15 |
H151 |
120.6 |
120.0 |
| C11 |
C12 |
H121 |
119.0 |
120.0 |
| C14 |
C15 |
H151 |
120.6 |
120.1 |
| C15 |
C14 |
H141 |
121.1 |
120.0 |
| C12 |
C13 |
H131 |
119.3 |
120.0 |
| C14 |
C13 |
H131 |
119.3 |
120.0 |
| H052 |
C05 |
H051 |
109.5 |
109.5 |
Torsion Angles for JNA
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C08 |
C07 |
C06 |
S10 |
1.1 |
360.0 |
| C09 |
C08 |
C07 |
H071 |
179.0 |
180.0 |
| C06 |
S10 |
C09 |
C08 |
0.2 |
0.0 |
| S10 |
C09 |
C08 |
H091 |
180.0 |
180.0 |
| C07 |
C06 |
S10 |
C09 |
359.3 |
360.0 |
| C07 |
C06 |
C05 |
H052 |
234.6 |
330.2 |
| C07 |
C06 |
C05 |
H051 |
353.2 |
210.3 |
| S10 |
C09 |
C08 |
H081 |
180.4 |
180.0 |
| C08 |
C09 |
S10 |
H091 |
180.0 |
180.0 |
| C08 |
C09 |
S10 |
C06 |
0.2 |
0.0 |
| C06 |
S10 |
C09 |
H091 |
180.2 |
180.0 |
| S10 |
C06 |
C05 |
H052 |
55.4 |
149.9 |
| S10 |
C06 |
C05 |
H051 |
174.1 |
30.0 |
| C06 |
C05 |
N04 |
H041 |
313.4 |
345.0 |
| H052 |
C05 |
C06 |
H051 |
241.4 |
119.9 |
| C05 |
N04 |
S02 |
C11 |
274.6 |
64.9 |
| N04 |
S02 |
O03 |
C11 |
242.7 |
114.1 |
| O03 |
S02 |
C11 |
C12 |
143.9 |
203.5 |
| O03 |
S02 |
N04 |
C11 |
121.6 |
246.5 |
| N04 |
S02 |
C11 |
C12 |
260.0 |
90.0 |
| S02 |
C11 |
C12 |
H121 |
359.5 |
360.0 |
| C11 |
C16 |
C15 |
H151 |
179.6 |
180.3 |
| C16 |
C11 |
C12 |
H121 |
180.2 |
180.0 |
| C14 |
C15 |
C16 |
H151 |
180.0 |
180.0 |
| C16 |
C15 |
C14 |
H141 |
180.5 |
180.0 |
| C11 |
C12 |
C13 |
H131 |
179.8 |
180.0 |
| C16 |
C15 |
C14 |
H151 |
180.0 |
180.0 |
| C15 |
C14 |
C13 |
H131 |
179.9 |
180.0 |
| C14 |
C13 |
C12 |
H131 |
180.0 |
180.3 |
| C12 |
C13 |
C14 |
H131 |
180.0 |
179.7 |
| H151 |
C15 |
C14 |
H141 |
0.5 |
0.0 |
| H041 |
N04 |
S02 |
C11 |
152.3 |
245.0 |
| C06 |
C05 |
H052 |
H051 |
117.9 |
240.1 |
| H052 |
C05 |
N04 |
H041 |
192.7 |
104.9 |
| C06 |
C05 |
H051 |
H052 |
242.1 |
119.9 |
| H051 |
C05 |
N04 |
H041 |
74.1 |
225.0 |
| H071 |
C07 |
C06 |
S10 |
181.1 |
180.0 |
| H081 |
C08 |
C07 |
H071 |
359.0 |
360.0 |
| H081 |
C08 |
C09 |
S10 |
180.4 |
180.0 |
| H081 |
C08 |
C09 |
H091 |
0.4 |
0.0 |
| C08 |
C09 |
H091 |
S10 |
180.0 |
180.0 |
| H091 |
C09 |
C08 |
H081 |
0.4 |
0.0 |
| H121 |
C12 |
C13 |
H131 |
359.8 |
0.0 |
| H141 |
C14 |
C15 |
H151 |
0.5 |
0.0 |
| H141 |
C14 |
C13 |
H131 |
359.8 |
360.0 |
| H161 |
C16 |
C15 |
H151 |
359.6 |
0.0 |