PDB Chemical Component JMZ

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for JMZ

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C4 C3 1.373 1.383
C4 N15 1.334 1.324
C5 C6 1.375 1.387
C5 C9 1.374 1.391
C6 C8 1.447 1.482
C6 C1 1.380 1.401
C7 C10 1.424 1.463
C7 C2 1.386 1.400
C7 C9 1.380 1.409
C8 C3 1.370 1.398
C8 N16 1.340 1.332
C10 N12 1.360 1.397
C10 N17 1.336 1.307
C1 C2 1.378 1.362
C9 N14 1.363 1.371
C11 N13 1.404 1.384
C11 N15 1.335 1.325
C11 N16 1.344 1.323
N14 N17 1.341 1.398
C4 H4 1.080 1.081
C5 H5 1.080 1.080
N12 HN12 1.000 0.970
N12 HN1A 1.000 0.970
C1 H1 1.080 1.080
C2 H2 1.080 1.080
C3 H3 1.080 1.080
N13 HN13 1.000 0.970
N13 HN1B 1.000 0.970
N14 HN14 1.000 0.970

Bond Angles for JMZ

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C3 C4 N15 123.9 119.3
C4 C3 C8 116.3 118.5
C3 C4 H4 118.0 120.3
C4 C3 H3 121.8 120.8
C4 N15 C11 115.7 121.0
N15 C4 H4 118.0 120.4
C6 C5 C9 115.8 119.7
C5 C6 C8 118.6 119.8
C5 C6 C1 120.1 120.4
C6 C5 H5 122.1 120.2
C5 C9 C7 125.1 119.5
C5 C9 N14 129.3 133.6
C9 C5 H5 122.1 120.1
C8 C6 C1 121.3 119.8
C6 C8 C3 120.9 120.5
C6 C8 N16 117.4 120.5
C6 C1 C2 123.8 120.5
C6 C1 H1 118.1 119.8
C10 C7 C2 136.0 133.8
C10 C7 C9 105.3 106.3
C7 C10 N12 124.3 126.1
C7 C10 N17 110.6 107.7
C2 C7 C9 118.7 120.0
C7 C2 C1 116.5 120.0
C7 C2 H2 121.7 120.0
C7 C9 N14 105.6 106.8
C3 C8 N16 121.6 118.9
C8 C3 H3 121.8 120.8
C8 N16 C11 117.6 120.6
N12 C10 N17 125.2 126.2
C10 N12 HN12 109.5 120.0
C10 N12 HN1A 109.5 120.0
C10 N17 N14 105.1 110.1
C2 C1 H1 118.1 119.7
C1 C2 H2 121.7 120.0
C9 N14 N17 113.3 109.2
C9 N14 HN14 123.3 125.4
N13 C11 N15 116.0 119.1
N13 C11 N16 119.2 119.2
C11 N13 HN13 109.5 120.1
C11 N13 HN1B 109.5 119.9
N15 C11 N16 124.8 121.7
N17 N14 HN14 123.3 125.4
HN12 N12 HN1A 109.5 120.0
HN13 N13 HN1B 109.4 120.0

Torsion Angles for JMZ

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C3 C4 N15 C11 0.4 0.1
N15 C4 C3 H4 180.0 180.2
C6 C8 C3 C4 182.6 180.0
C4 C3 C8 N16 0.2 -0.0
C8 C3 C4 H3 180.0 180.0
N15 C4 C3 C8 359.3 360.0
C3 C4 N15 H4 180.0 179.8
N15 C4 C3 H3 179.3 180.0
N13 C11 N15 C4 180.3 179.9
C4 N15 C11 N16 0.3 359.9
C6 C5 C9 C7 359.6 -0.0
C6 C5 C9 N14 180.6 180.0
C9 C5 C6 H5 180.0 180.3
C8 C6 C5 C1 180.2 180.0
C5 C6 C8 C3 168.5 180.0
C5 C6 C8 N16 350.8 -0.0
C5 C6 C1 C2 1.3 -0.0
C5 C6 C1 H1 181.4 180.0
C9 C5 C6 C8 179.6 180.0
C9 C5 C6 C1 359.4 360.0
C6 C5 C9 H5 180.0 179.7
C10 C7 C9 C5 180.6 180.0
C2 C7 C9 C5 0.8 -0.0
C7 C9 C5 N14 179.0 180.0
C5 C9 N14 N17 179.2 180.0
C5 C9 N14 HN14 359.2 359.9
C4 C3 C8 C6 182.6 180.0
C8 C6 C5 C9 179.6 180.0
C5 C6 C8 C1 179.8 180.0
C8 C6 C5 H5 359.6 359.7
C8 C6 C1 C2 181.1 180.0
C8 C6 C1 H1 1.2 -0.0
C3 C8 C6 N16 177.7 180.0
C6 C8 C3 H3 2.6 -0.0
C6 C8 N16 C11 178.1 180.0
C1 C6 C5 C9 359.4 360.0
C5 C6 C1 C8 180.2 180.0
C1 C6 C5 H5 179.4 179.7
C1 C6 C8 C3 348.7 -0.0
C1 C6 C8 N16 171.0 180.0
C7 C2 C1 C6 359.0 -0.0
C2 C1 C6 H1 180.0 180.0
C6 C1 C2 H2 179.0 180.1
C5 C9 C7 C10 180.6 180.0
C2 C7 C10 C9 179.8 180.0
C10 C7 C2 C1 180.2 180.0
C10 C7 C2 H2 0.2 359.9
C10 C7 C9 N14 359.8 360.0
N12 C10 C7 N17 179.5 180.0
C7 C10 N12 HN12 180.5 -0.0
C7 C10 N12 HN1A 300.5 180.0
C7 C10 N17 N14 359.7 359.9
C5 C9 C7 C2 0.8 -0.0
C6 C1 C2 C7 359.0 -0.0
C10 C7 C2 C9 180.2 180.0
C2 C7 C10 N12 359.7 -0.0
C2 C7 C10 N17 180.1 180.0
C2 C7 C9 N14 179.9 180.0
C7 C2 C1 H1 179.0 180.0
C1 C2 C7 H2 180.0 180.1
C5 C9 C7 N14 180.8 180.0
C7 C9 C5 H5 179.6 180.3
C10 C7 C9 C2 179.8 180.0
C9 C7 C10 N12 179.9 180.0
C9 C7 C10 N17 0.4 0.0
C9 C7 C2 C1 359.9 -0.0
C9 C7 C2 H2 179.9 179.9
C7 C9 N14 N17 0.0 360.0
C7 C9 N14 HN14 180.1 179.9
C8 C3 C4 N15 359.3 360.0
C8 C3 C4 H4 179.3 179.8
C4 C3 C8 H3 180.0 180.0
C3 C8 C6 C1 348.7 360.0
C6 C8 C3 N16 182.3 180.0
C3 C8 N16 C11 0.4 360.0
N16 C8 C6 C1 171.0 180.0
C6 C8 N16 C3 177.7 180.0
N16 C8 C3 H3 180.2 180.0
N13 C11 N16 C8 179.3 180.0
N15 C11 N16 C8 359.3 0.1
N12 C10 C7 C2 359.7 -0.0
N12 C10 C7 C9 179.9 180.0
C7 C10 N12 N17 180.5 180.1
N12 C10 N17 N14 180.1 180.0
HN12 N12 C10 HN1A 240.0 180.0
N17 C10 C7 C2 180.1 180.0
N17 C10 C7 C9 0.4 0.0
C7 C10 N17 N12 179.5 180.0
N17 C10 N12 HN12 360.0 179.9
N17 C10 N12 HN1A 120.0 359.9
C9 N14 N17 C10 0.2 0.1
C10 N17 N14 HN14 180.2 180.1
C6 C1 C2 H1 180.0 180.0
C1 C2 C7 C9 359.9 -0.0
C7 C2 C1 H2 180.0 179.9
C5 C9 N14 C7 179.1 180.0
N14 C9 C5 H5 0.6 0.3
C10 N17 N14 C9 0.2 0.1
N17 N14 C9 HN14 180.0 180.0
C4 N15 C11 N13 180.3 179.9
C8 N16 C11 N13 179.3 180.0
N15 C11 N13 N16 180.0 180.0
HN13 N13 C11 HN1B 240.0 180.0
C11 N15 C4 H4 180.4 180.3
C8 N16 C11 N15 359.3 0.1
N13 C11 N15 N16 180.0 180.1
N15 C11 N13 HN13 0.0 360.0
N15 C11 N13 HN1B 120.0 180.0
N13 C11 N16 N15 180.0 179.9
N16 C11 N13 HN13 180.0 180.0
N16 C11 N13 HN1B 300.0 -0.0
C9 N14 N17 HN14 180.0 180.0
C3 C4 H4 N15 180.0 180.2
H4 C4 C3 C8 179.3 179.8
H4 C4 C3 H3 359.3 359.8
H4 C4 N15 C11 180.4 180.3
C6 C5 H5 C9 180.0 180.3
H5 C5 C6 C8 359.6 359.7
H5 C5 C6 C1 179.4 179.7
H5 C5 C9 C7 179.6 180.3
H5 C5 C9 N14 0.6 0.3
HN12 N12 C10 N17 360.0 179.9
C10 N12 HN12 HN1A 120.0 180.0
HN1A N12 C10 N17 120.0 359.9
C10 N12 HN1A HN12 240.0 180.0
C6 C1 H1 C2 180.0 180.0
H1 C1 C2 H2 359.0 0.1
H2 C2 C7 C9 179.9 179.9
C7 C2 H2 C1 180.0 180.1
H2 C2 C1 H1 359.0 0.1
H3 C3 C4 N15 179.3 180.0
C4 C3 H3 C8 180.0 180.0
H3 C3 C4 H4 359.3 359.8
H3 C3 C8 N16 180.2 180.0
HN13 N13 C11 N15 0.0 360.0
HN13 N13 C11 N16 180.0 180.0
C11 N13 HN13 HN1B 120.0 180.0
HN1B N13 C11 N15 120.0 180.0
HN1B N13 C11 N16 300.0 -0.0
C11 N13 HN1B HN13 240.0 180.0
C9 N14 HN14 N17 180.0 180.0