PDB Chemical Component JMZ
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for JMZ
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C4 |
C3 |
1.373 |
1.383 |
C4 |
N15 |
1.334 |
1.324 |
C5 |
C6 |
1.375 |
1.387 |
C5 |
C9 |
1.374 |
1.391 |
C6 |
C8 |
1.447 |
1.482 |
C6 |
C1 |
1.380 |
1.401 |
C7 |
C10 |
1.424 |
1.463 |
C7 |
C2 |
1.386 |
1.400 |
C7 |
C9 |
1.380 |
1.409 |
C8 |
C3 |
1.370 |
1.398 |
C8 |
N16 |
1.340 |
1.332 |
C10 |
N12 |
1.360 |
1.397 |
C10 |
N17 |
1.336 |
1.307 |
C1 |
C2 |
1.378 |
1.362 |
C9 |
N14 |
1.363 |
1.371 |
C11 |
N13 |
1.404 |
1.384 |
C11 |
N15 |
1.335 |
1.325 |
C11 |
N16 |
1.344 |
1.323 |
N14 |
N17 |
1.341 |
1.398 |
C4 |
H4 |
1.080 |
1.081 |
C5 |
H5 |
1.080 |
1.080 |
N12 |
HN12 |
1.000 |
0.970 |
N12 |
HN1A |
1.000 |
0.970 |
C1 |
H1 |
1.080 |
1.080 |
C2 |
H2 |
1.080 |
1.080 |
C3 |
H3 |
1.080 |
1.080 |
N13 |
HN13 |
1.000 |
0.970 |
N13 |
HN1B |
1.000 |
0.970 |
N14 |
HN14 |
1.000 |
0.970 |
Bond Angles for JMZ
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C3 |
C4 |
N15 |
123.9 |
119.3 |
C4 |
C3 |
C8 |
116.3 |
118.5 |
C3 |
C4 |
H4 |
118.0 |
120.3 |
C4 |
C3 |
H3 |
121.8 |
120.8 |
C4 |
N15 |
C11 |
115.7 |
121.0 |
N15 |
C4 |
H4 |
118.0 |
120.4 |
C6 |
C5 |
C9 |
115.8 |
119.7 |
C5 |
C6 |
C8 |
118.6 |
119.8 |
C5 |
C6 |
C1 |
120.1 |
120.4 |
C6 |
C5 |
H5 |
122.1 |
120.2 |
C5 |
C9 |
C7 |
125.1 |
119.5 |
C5 |
C9 |
N14 |
129.3 |
133.6 |
C9 |
C5 |
H5 |
122.1 |
120.1 |
C8 |
C6 |
C1 |
121.3 |
119.8 |
C6 |
C8 |
C3 |
120.9 |
120.5 |
C6 |
C8 |
N16 |
117.4 |
120.5 |
C6 |
C1 |
C2 |
123.8 |
120.5 |
C6 |
C1 |
H1 |
118.1 |
119.8 |
C10 |
C7 |
C2 |
136.0 |
133.8 |
C10 |
C7 |
C9 |
105.3 |
106.3 |
C7 |
C10 |
N12 |
124.3 |
126.1 |
C7 |
C10 |
N17 |
110.6 |
107.7 |
C2 |
C7 |
C9 |
118.7 |
120.0 |
C7 |
C2 |
C1 |
116.5 |
120.0 |
C7 |
C2 |
H2 |
121.7 |
120.0 |
C7 |
C9 |
N14 |
105.6 |
106.8 |
C3 |
C8 |
N16 |
121.6 |
118.9 |
C8 |
C3 |
H3 |
121.8 |
120.8 |
C8 |
N16 |
C11 |
117.6 |
120.6 |
N12 |
C10 |
N17 |
125.2 |
126.2 |
C10 |
N12 |
HN12 |
109.5 |
120.0 |
C10 |
N12 |
HN1A |
109.5 |
120.0 |
C10 |
N17 |
N14 |
105.1 |
110.1 |
C2 |
C1 |
H1 |
118.1 |
119.7 |
C1 |
C2 |
H2 |
121.7 |
120.0 |
C9 |
N14 |
N17 |
113.3 |
109.2 |
C9 |
N14 |
HN14 |
123.3 |
125.4 |
N13 |
C11 |
N15 |
116.0 |
119.1 |
N13 |
C11 |
N16 |
119.2 |
119.2 |
C11 |
N13 |
HN13 |
109.5 |
120.1 |
C11 |
N13 |
HN1B |
109.5 |
119.9 |
N15 |
C11 |
N16 |
124.8 |
121.7 |
N17 |
N14 |
HN14 |
123.3 |
125.4 |
HN12 |
N12 |
HN1A |
109.5 |
120.0 |
HN13 |
N13 |
HN1B |
109.4 |
120.0 |
Torsion Angles for JMZ
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C3 |
C4 |
N15 |
C11 |
0.4 |
0.1 |
N15 |
C4 |
C3 |
H4 |
180.0 |
180.2 |
C6 |
C8 |
C3 |
C4 |
182.6 |
180.0 |
C4 |
C3 |
C8 |
N16 |
0.2 |
-0.0 |
C8 |
C3 |
C4 |
H3 |
180.0 |
180.0 |
N15 |
C4 |
C3 |
C8 |
359.3 |
360.0 |
C3 |
C4 |
N15 |
H4 |
180.0 |
179.8 |
N15 |
C4 |
C3 |
H3 |
179.3 |
180.0 |
N13 |
C11 |
N15 |
C4 |
180.3 |
179.9 |
C4 |
N15 |
C11 |
N16 |
0.3 |
359.9 |
C6 |
C5 |
C9 |
C7 |
359.6 |
-0.0 |
C6 |
C5 |
C9 |
N14 |
180.6 |
180.0 |
C9 |
C5 |
C6 |
H5 |
180.0 |
180.3 |
C8 |
C6 |
C5 |
C1 |
180.2 |
180.0 |
C5 |
C6 |
C8 |
C3 |
168.5 |
180.0 |
C5 |
C6 |
C8 |
N16 |
350.8 |
-0.0 |
C5 |
C6 |
C1 |
C2 |
1.3 |
-0.0 |
C5 |
C6 |
C1 |
H1 |
181.4 |
180.0 |
C9 |
C5 |
C6 |
C8 |
179.6 |
180.0 |
C9 |
C5 |
C6 |
C1 |
359.4 |
360.0 |
C6 |
C5 |
C9 |
H5 |
180.0 |
179.7 |
C10 |
C7 |
C9 |
C5 |
180.6 |
180.0 |
C2 |
C7 |
C9 |
C5 |
0.8 |
-0.0 |
C7 |
C9 |
C5 |
N14 |
179.0 |
180.0 |
C5 |
C9 |
N14 |
N17 |
179.2 |
180.0 |
C5 |
C9 |
N14 |
HN14 |
359.2 |
359.9 |
C4 |
C3 |
C8 |
C6 |
182.6 |
180.0 |
C8 |
C6 |
C5 |
C9 |
179.6 |
180.0 |
C5 |
C6 |
C8 |
C1 |
179.8 |
180.0 |
C8 |
C6 |
C5 |
H5 |
359.6 |
359.7 |
C8 |
C6 |
C1 |
C2 |
181.1 |
180.0 |
C8 |
C6 |
C1 |
H1 |
1.2 |
-0.0 |
C3 |
C8 |
C6 |
N16 |
177.7 |
180.0 |
C6 |
C8 |
C3 |
H3 |
2.6 |
-0.0 |
C6 |
C8 |
N16 |
C11 |
178.1 |
180.0 |
C1 |
C6 |
C5 |
C9 |
359.4 |
360.0 |
C5 |
C6 |
C1 |
C8 |
180.2 |
180.0 |
C1 |
C6 |
C5 |
H5 |
179.4 |
179.7 |
C1 |
C6 |
C8 |
C3 |
348.7 |
-0.0 |
C1 |
C6 |
C8 |
N16 |
171.0 |
180.0 |
C7 |
C2 |
C1 |
C6 |
359.0 |
-0.0 |
C2 |
C1 |
C6 |
H1 |
180.0 |
180.0 |
C6 |
C1 |
C2 |
H2 |
179.0 |
180.1 |
C5 |
C9 |
C7 |
C10 |
180.6 |
180.0 |
C2 |
C7 |
C10 |
C9 |
179.8 |
180.0 |
C10 |
C7 |
C2 |
C1 |
180.2 |
180.0 |
C10 |
C7 |
C2 |
H2 |
0.2 |
359.9 |
C10 |
C7 |
C9 |
N14 |
359.8 |
360.0 |
N12 |
C10 |
C7 |
N17 |
179.5 |
180.0 |
C7 |
C10 |
N12 |
HN12 |
180.5 |
-0.0 |
C7 |
C10 |
N12 |
HN1A |
300.5 |
180.0 |
C7 |
C10 |
N17 |
N14 |
359.7 |
359.9 |
C5 |
C9 |
C7 |
C2 |
0.8 |
-0.0 |
C6 |
C1 |
C2 |
C7 |
359.0 |
-0.0 |
C10 |
C7 |
C2 |
C9 |
180.2 |
180.0 |
C2 |
C7 |
C10 |
N12 |
359.7 |
-0.0 |
C2 |
C7 |
C10 |
N17 |
180.1 |
180.0 |
C2 |
C7 |
C9 |
N14 |
179.9 |
180.0 |
C7 |
C2 |
C1 |
H1 |
179.0 |
180.0 |
C1 |
C2 |
C7 |
H2 |
180.0 |
180.1 |
C5 |
C9 |
C7 |
N14 |
180.8 |
180.0 |
C7 |
C9 |
C5 |
H5 |
179.6 |
180.3 |
C10 |
C7 |
C9 |
C2 |
179.8 |
180.0 |
C9 |
C7 |
C10 |
N12 |
179.9 |
180.0 |
C9 |
C7 |
C10 |
N17 |
0.4 |
0.0 |
C9 |
C7 |
C2 |
C1 |
359.9 |
-0.0 |
C9 |
C7 |
C2 |
H2 |
179.9 |
179.9 |
C7 |
C9 |
N14 |
N17 |
0.0 |
360.0 |
C7 |
C9 |
N14 |
HN14 |
180.1 |
179.9 |
C8 |
C3 |
C4 |
N15 |
359.3 |
360.0 |
C8 |
C3 |
C4 |
H4 |
179.3 |
179.8 |
C4 |
C3 |
C8 |
H3 |
180.0 |
180.0 |
C3 |
C8 |
C6 |
C1 |
348.7 |
360.0 |
C6 |
C8 |
C3 |
N16 |
182.3 |
180.0 |
C3 |
C8 |
N16 |
C11 |
0.4 |
360.0 |
N16 |
C8 |
C6 |
C1 |
171.0 |
180.0 |
C6 |
C8 |
N16 |
C3 |
177.7 |
180.0 |
N16 |
C8 |
C3 |
H3 |
180.2 |
180.0 |
N13 |
C11 |
N16 |
C8 |
179.3 |
180.0 |
N15 |
C11 |
N16 |
C8 |
359.3 |
0.1 |
N12 |
C10 |
C7 |
C2 |
359.7 |
-0.0 |
N12 |
C10 |
C7 |
C9 |
179.9 |
180.0 |
C7 |
C10 |
N12 |
N17 |
180.5 |
180.1 |
N12 |
C10 |
N17 |
N14 |
180.1 |
180.0 |
HN12 |
N12 |
C10 |
HN1A |
240.0 |
180.0 |
N17 |
C10 |
C7 |
C2 |
180.1 |
180.0 |
N17 |
C10 |
C7 |
C9 |
0.4 |
0.0 |
C7 |
C10 |
N17 |
N12 |
179.5 |
180.0 |
N17 |
C10 |
N12 |
HN12 |
360.0 |
179.9 |
N17 |
C10 |
N12 |
HN1A |
120.0 |
359.9 |
C9 |
N14 |
N17 |
C10 |
0.2 |
0.1 |
C10 |
N17 |
N14 |
HN14 |
180.2 |
180.1 |
C6 |
C1 |
C2 |
H1 |
180.0 |
180.0 |
C1 |
C2 |
C7 |
C9 |
359.9 |
-0.0 |
C7 |
C2 |
C1 |
H2 |
180.0 |
179.9 |
C5 |
C9 |
N14 |
C7 |
179.1 |
180.0 |
N14 |
C9 |
C5 |
H5 |
0.6 |
0.3 |
C10 |
N17 |
N14 |
C9 |
0.2 |
0.1 |
N17 |
N14 |
C9 |
HN14 |
180.0 |
180.0 |
C4 |
N15 |
C11 |
N13 |
180.3 |
179.9 |
C8 |
N16 |
C11 |
N13 |
179.3 |
180.0 |
N15 |
C11 |
N13 |
N16 |
180.0 |
180.0 |
HN13 |
N13 |
C11 |
HN1B |
240.0 |
180.0 |
C11 |
N15 |
C4 |
H4 |
180.4 |
180.3 |
C8 |
N16 |
C11 |
N15 |
359.3 |
0.1 |
N13 |
C11 |
N15 |
N16 |
180.0 |
180.1 |
N15 |
C11 |
N13 |
HN13 |
0.0 |
360.0 |
N15 |
C11 |
N13 |
HN1B |
120.0 |
180.0 |
N13 |
C11 |
N16 |
N15 |
180.0 |
179.9 |
N16 |
C11 |
N13 |
HN13 |
180.0 |
180.0 |
N16 |
C11 |
N13 |
HN1B |
300.0 |
-0.0 |
C9 |
N14 |
N17 |
HN14 |
180.0 |
180.0 |
C3 |
C4 |
H4 |
N15 |
180.0 |
180.2 |
H4 |
C4 |
C3 |
C8 |
179.3 |
179.8 |
H4 |
C4 |
C3 |
H3 |
359.3 |
359.8 |
H4 |
C4 |
N15 |
C11 |
180.4 |
180.3 |
C6 |
C5 |
H5 |
C9 |
180.0 |
180.3 |
H5 |
C5 |
C6 |
C8 |
359.6 |
359.7 |
H5 |
C5 |
C6 |
C1 |
179.4 |
179.7 |
H5 |
C5 |
C9 |
C7 |
179.6 |
180.3 |
H5 |
C5 |
C9 |
N14 |
0.6 |
0.3 |
HN12 |
N12 |
C10 |
N17 |
360.0 |
179.9 |
C10 |
N12 |
HN12 |
HN1A |
120.0 |
180.0 |
HN1A |
N12 |
C10 |
N17 |
120.0 |
359.9 |
C10 |
N12 |
HN1A |
HN12 |
240.0 |
180.0 |
C6 |
C1 |
H1 |
C2 |
180.0 |
180.0 |
H1 |
C1 |
C2 |
H2 |
359.0 |
0.1 |
H2 |
C2 |
C7 |
C9 |
179.9 |
179.9 |
C7 |
C2 |
H2 |
C1 |
180.0 |
180.1 |
H2 |
C2 |
C1 |
H1 |
359.0 |
0.1 |
H3 |
C3 |
C4 |
N15 |
179.3 |
180.0 |
C4 |
C3 |
H3 |
C8 |
180.0 |
180.0 |
H3 |
C3 |
C4 |
H4 |
359.3 |
359.8 |
H3 |
C3 |
C8 |
N16 |
180.2 |
180.0 |
HN13 |
N13 |
C11 |
N15 |
0.0 |
360.0 |
HN13 |
N13 |
C11 |
N16 |
180.0 |
180.0 |
C11 |
N13 |
HN13 |
HN1B |
120.0 |
180.0 |
HN1B |
N13 |
C11 |
N15 |
120.0 |
180.0 |
HN1B |
N13 |
C11 |
N16 |
300.0 |
-0.0 |
C11 |
N13 |
HN1B |
HN13 |
240.0 |
180.0 |
C9 |
N14 |
HN14 |
N17 |
180.0 |
180.0 |